Wall clock time and date at job start Tue Mar 31 2020 19:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00287 * 2 1 4 4 C 1.52994 * 109.47687 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47340 * 180.02562 * 4 3 2 6 6 H 1.08993 * 109.47274 * 55.00094 * 5 4 3 7 7 C 1.53001 * 109.47125 * 294.99972 * 5 4 3 8 8 C 1.50704 * 109.46929 * 175.00071 * 5 4 3 9 9 O 1.21278 * 120.00266 * 34.55557 * 8 5 4 10 10 N 1.34784 * 119.99615 * 214.55007 * 8 5 4 11 11 C 1.47583 * 134.48736 * 174.88632 * 10 8 5 12 12 C 1.53951 * 86.11386 * 155.36266 * 11 10 8 13 13 N 1.46495 * 113.74184 * 137.95329 * 12 11 10 14 14 C 1.35320 * 125.86623 * 275.32800 * 13 12 11 15 15 C 1.35351 * 106.17527 * 180.11950 * 14 13 12 16 16 C 1.50692 * 126.75208 * 179.85077 * 15 14 13 17 17 N 1.46500 * 109.46989 * 94.71001 * 16 15 14 18 18 C 1.36937 * 119.99994 * 179.72235 * 17 16 15 19 19 H 1.08007 * 119.99982 * 0.27538 * 18 17 16 20 20 C 1.38814 * 120.00535 * 180.27410 * 18 17 16 21 21 N 1.31626 * 119.99519 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00287 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47222 * 0.02562 * 22 20 18 24 24 H 1.48509 * 109.46995 * 120.00095 * 22 20 18 25 25 H 1.48496 * 109.47383 * 239.99767 * 22 20 18 26 26 N 1.33778 * 106.49172 * 359.58623 * 15 14 13 27 27 N 1.28629 * 108.88893 * 0.26381 * 26 15 14 28 28 C 1.47576 * 134.49445 * 354.88732 * 10 8 5 29 29 H 1.09005 * 109.46916 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46831 * 299.99582 * 1 2 3 31 31 H 1.08993 * 109.47157 * 60.00083 * 1 2 3 32 32 H 1.09009 * 109.46787 * 59.99941 * 3 2 1 33 33 H 1.08995 * 109.47095 * 300.00940 * 3 2 1 34 34 H 1.09000 * 109.46966 * 60.00315 * 4 3 2 35 35 H 1.09006 * 109.47118 * 300.00785 * 4 3 2 36 36 H 1.09000 * 109.47037 * 65.69295 * 7 5 4 37 37 H 1.09004 * 109.46899 * 185.69222 * 7 5 4 38 38 H 1.08997 * 109.46928 * 305.69394 * 7 5 4 39 39 H 1.08992 * 113.76912 * 41.06299 * 11 10 8 40 40 H 1.08994 * 113.87052 * 269.67308 * 11 10 8 41 41 H 1.09003 * 113.73938 * 269.15342 * 12 11 10 42 42 H 1.07997 * 126.91146 * 359.96082 * 14 13 12 43 43 H 1.08996 * 109.47553 * 334.70950 * 16 15 14 44 44 H 1.09008 * 109.46971 * 214.70682 * 16 15 14 45 45 H 0.96994 * 120.00368 * 359.97438 * 17 16 15 46 46 H 0.96992 * 119.99753 * 180.02562 * 21 20 18 47 47 H 1.09002 * 113.76694 * 90.33751 * 28 10 8 48 48 H 1.08997 * 113.77327 * 318.94553 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5824 0.0000 6 1 3.7674 3.1535 0.8423 7 6 3.8077 3.2971 -1.3068 8 6 5.6552 2.4655 0.1232 9 8 6.2356 1.5358 -0.3961 10 7 6.3493 3.3942 0.8104 11 6 7.7629 3.5454 1.2066 12 6 7.4764 5.0570 1.2633 13 7 8.0762 5.7280 2.4192 14 6 7.5359 5.8093 3.6572 15 6 8.4161 6.5125 4.4073 16 6 8.2714 6.8773 5.8622 17 7 8.9561 5.8783 6.6865 18 6 8.9642 6.0048 8.0500 19 1 8.4620 6.8387 8.5180 20 6 9.6178 5.0614 8.8309 21 7 10.2303 4.0455 8.2605 22 14 9.6282 5.2337 10.6908 23 1 8.8737 6.4522 11.0793 24 1 8.9892 4.0405 11.3020 25 1 11.0294 5.3447 11.1699 26 7 9.4425 6.8151 3.6044 27 7 9.2105 6.3360 2.4334 28 6 6.0011 4.6681 1.4690 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6886 1.8464 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.8567 0.6440 -0.8909 35 1 3.8575 0.6435 0.8891 36 1 2.7326 3.4717 -1.3487 37 1 4.3329 4.2512 -1.3509 38 1 4.1084 2.6774 -2.1516 39 1 8.4702 3.2613 0.4276 40 1 7.9987 3.1063 2.1759 41 1 7.6684 5.5756 0.3240 42 1 6.5912 5.3982 3.9809 43 1 7.2144 6.9038 6.1268 44 1 8.7144 7.8578 6.0368 45 1 9.4069 5.1293 6.2663 46 1 10.6867 3.3861 8.8061 47 1 5.7175 4.5584 2.5157 48 1 5.3018 5.2804 0.8995 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105375704.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:48 Heat of formation + Delta-G solvation = 70.871955 kcal Electronic energy + Delta-G solvation = -28389.060440 eV Core-core repulsion = 24290.661217 eV Total energy + Delta-G solvation = -4098.399223 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.16139 -40.91113 -38.93290 -38.16771 -35.31006 -35.02752 -33.53441 -31.87728 -30.26859 -29.97302 -29.12350 -27.08341 -26.84197 -25.95525 -25.27933 -23.94035 -22.85190 -21.85941 -21.00053 -20.63689 -19.29482 -18.18762 -17.66864 -17.07307 -17.00222 -16.55643 -16.33208 -15.87205 -15.53518 -15.28179 -14.88851 -14.69164 -14.44714 -14.21356 -13.92311 -13.73293 -13.50867 -13.31104 -13.19869 -13.05416 -12.73519 -12.66284 -12.37838 -12.21017 -12.09269 -11.82000 -11.78344 -11.43881 -11.39917 -11.31714 -10.91463 -10.83971 -10.56137 -10.23565 -10.09220 -10.06319 -9.94291 -9.75847 -9.33381 -8.93989 -8.89116 -6.93645 -5.75455 -3.05376 1.67065 1.85675 2.05587 2.58560 2.83647 3.22727 3.42229 3.44710 3.50172 3.52709 3.67914 4.08505 4.23342 4.27981 4.44274 4.57866 4.60616 4.62715 4.69038 4.70910 4.74663 4.81001 4.89321 4.91627 4.95598 5.05534 5.07908 5.17268 5.18193 5.24011 5.26662 5.34138 5.42755 5.45739 5.59611 5.66481 5.74303 5.76479 6.14513 6.33680 6.60171 6.64419 6.68262 6.73725 7.03680 7.62997 7.70254 8.41637 8.75406 9.53570 10.08773 10.44394 11.47256 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011268 B = 0.002123 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.347746 B =13183.215195 C =14770.599385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.062 3.938 4 C -0.104 4.104 5 C -0.100 4.100 6 H 0.093 0.907 7 C -0.144 4.144 8 C 0.551 3.449 9 O -0.525 6.525 10 N -0.645 5.645 11 C 0.103 3.897 12 C 0.113 3.887 13 N -0.295 5.295 14 C -0.047 4.047 15 C 0.000 4.000 16 C 0.232 3.768 17 N -0.726 5.726 18 C -0.240 4.240 19 H 0.074 0.926 20 C -0.013 4.013 21 N -0.931 5.931 22 Si 0.909 3.091 23 H -0.279 1.279 24 H -0.292 1.292 25 H -0.291 1.291 26 N -0.250 5.250 27 N -0.090 5.090 28 C 0.099 3.901 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.145 0.855 42 H 0.189 0.811 43 H 0.038 0.962 44 H 0.040 0.960 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.104 0.896 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.902 -1.325 -22.088 30.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.015 4.015 4 C -0.142 4.142 5 C -0.122 4.122 6 H 0.111 0.889 7 C -0.202 4.202 8 C 0.340 3.660 9 O -0.399 6.399 10 N -0.382 5.382 11 C -0.020 4.020 12 C 0.010 3.990 13 N -0.090 5.090 14 C -0.196 4.196 15 C -0.138 4.138 16 C 0.103 3.897 17 N -0.371 5.371 18 C -0.371 4.371 19 H 0.092 0.908 20 C -0.210 4.210 21 N -0.579 5.579 22 Si 0.740 3.260 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.218 1.218 26 N -0.117 5.117 27 N -0.068 5.068 28 C -0.026 4.026 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.163 0.837 42 H 0.206 0.794 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.122 0.878 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -19.393 -1.690 -23.173 30.264 hybrid contribution -0.960 -0.379 1.547 1.860 sum -20.353 -2.069 -21.626 29.769 Atomic orbital electron populations 1.22757 0.80788 1.02958 1.00007 1.87890 1.19863 1.27834 1.95421 1.22559 0.93617 0.84909 1.00396 1.21349 0.92898 0.94944 1.05047 1.21156 0.91066 0.98789 1.01164 0.88852 1.21810 1.02360 1.00398 0.95608 1.20241 0.88988 0.79858 0.76900 1.90754 1.71135 1.31731 1.46289 1.49696 1.10883 1.23191 1.54434 1.23625 0.84209 0.91406 1.02801 1.23666 0.93489 0.93245 0.88639 1.47114 1.15019 1.37598 1.09253 1.23315 1.03891 1.07486 0.84945 1.22499 0.91411 1.00867 0.98980 1.18966 0.96521 0.93922 0.80332 1.42312 1.64359 1.27460 1.02948 1.19268 1.28299 1.07297 0.82239 0.90805 1.24774 1.00568 0.97529 0.98094 1.69690 1.39711 1.14384 1.34155 0.86085 0.77263 0.77163 0.85460 1.20457 1.21918 1.21845 1.75132 1.22510 1.17920 0.96179 1.78306 1.00017 1.10682 1.17834 1.23659 0.95115 0.83459 1.00319 0.89495 0.93947 0.94043 0.93133 0.92868 0.89607 0.90521 0.91033 0.91954 0.91310 0.88023 0.88115 0.83711 0.79446 0.94423 0.94241 0.78107 0.93532 0.87765 0.87769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.39 10.70 -35.23 -0.38 -3.76 16 3 C 0.06 0.39 5.69 37.15 0.21 0.61 16 4 C -0.10 -0.80 4.62 -26.74 -0.12 -0.93 16 5 C -0.10 -0.63 2.57 -91.77 -0.24 -0.87 16 6 H 0.09 0.41 7.78 -51.93 -0.40 0.00 16 7 C -0.14 -0.67 8.79 37.16 0.33 -0.34 16 8 C 0.55 5.32 7.06 -10.98 -0.08 5.24 16 9 O -0.52 -7.30 17.10 5.56 0.10 -7.21 16 10 N -0.64 -5.21 3.61 -178.54 -0.64 -5.85 16 11 C 0.10 0.93 8.64 -2.97 -0.03 0.90 16 12 C 0.11 0.89 5.15 -70.15 -0.36 0.53 16 13 N -0.30 -3.66 3.54 -56.30 -0.20 -3.86 16 14 C -0.05 -0.62 10.72 -17.04 -0.18 -0.81 16 15 C 0.00 0.00 6.62 -82.78 -0.55 -0.55 16 16 C 0.23 4.67 6.82 -5.20 -0.04 4.64 16 17 N -0.73 -18.57 5.59 -61.09 -0.34 -18.91 16 18 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 19 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -28.51 13.06 55.49 0.72 -27.79 16 22 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 26 N -0.25 -4.86 12.41 33.29 0.41 -4.45 16 27 N -0.09 -1.49 13.16 60.35 0.79 -0.69 16 28 C 0.10 0.53 7.71 -2.98 -0.02 0.50 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.05 0.27 8.14 -51.92 -0.42 -0.16 16 33 H 0.05 0.26 6.69 -51.93 -0.35 -0.09 16 34 H 0.09 0.78 8.02 -51.93 -0.42 0.36 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.22 6.85 -51.93 -0.36 -0.14 16 37 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.15 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.19 1.82 6.72 -52.49 -0.35 1.47 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.04 0.82 8.14 -51.92 -0.42 0.40 16 45 H 0.39 10.67 7.66 -40.82 -0.31 10.36 16 46 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 47 H 0.10 0.51 6.31 -51.93 -0.33 0.18 16 48 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 LS Contribution 402.95 15.07 6.07 6.07 Total: -1.00 -37.42 402.95 -6.25 -43.67 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -7.56 Total: 2.54 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -0.21 Total: 2.90 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: 0.75 Total: -61.55 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: -0.28 Total: -10.97 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -37.42 -6.25 -43.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105375704.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.546 kcal (2) G-P(sol) polarization free energy of solvation -37.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds