Wall clock time and date at job start Tue Mar 31 2020 19:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00287 * 2 1 4 4 C 1.52994 * 109.47687 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47340 * 180.02562 * 4 3 2 6 6 H 1.08993 * 109.47274 * 55.00094 * 5 4 3 7 7 C 1.53001 * 109.47125 * 294.99972 * 5 4 3 8 8 C 1.50704 * 109.46929 * 175.00071 * 5 4 3 9 9 O 1.21278 * 120.00266 * 34.55557 * 8 5 4 10 10 N 1.34784 * 119.99615 * 214.55007 * 8 5 4 11 11 C 1.47583 * 134.48736 * 174.88632 * 10 8 5 12 12 C 1.53951 * 86.11386 * 155.36266 * 11 10 8 13 13 N 1.46495 * 113.74184 * 137.95329 * 12 11 10 14 14 C 1.35320 * 125.86623 * 275.32800 * 13 12 11 15 15 C 1.35351 * 106.17527 * 180.11950 * 14 13 12 16 16 C 1.50692 * 126.75208 * 179.85077 * 15 14 13 17 17 N 1.46500 * 109.46989 * 94.71001 * 16 15 14 18 18 C 1.36937 * 119.99994 * 179.72235 * 17 16 15 19 19 H 1.08007 * 119.99982 * 0.27538 * 18 17 16 20 20 C 1.38814 * 120.00535 * 180.27410 * 18 17 16 21 21 N 1.31626 * 119.99519 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00287 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47222 * 0.02562 * 22 20 18 24 24 H 1.48509 * 109.46995 * 120.00095 * 22 20 18 25 25 H 1.48496 * 109.47383 * 239.99767 * 22 20 18 26 26 N 1.33778 * 106.49172 * 359.58623 * 15 14 13 27 27 N 1.28629 * 108.88893 * 0.26381 * 26 15 14 28 28 C 1.47576 * 134.49445 * 354.88732 * 10 8 5 29 29 H 1.09005 * 109.46916 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46831 * 299.99582 * 1 2 3 31 31 H 1.08993 * 109.47157 * 60.00083 * 1 2 3 32 32 H 1.09009 * 109.46787 * 59.99941 * 3 2 1 33 33 H 1.08995 * 109.47095 * 300.00940 * 3 2 1 34 34 H 1.09000 * 109.46966 * 60.00315 * 4 3 2 35 35 H 1.09006 * 109.47118 * 300.00785 * 4 3 2 36 36 H 1.09000 * 109.47037 * 65.69295 * 7 5 4 37 37 H 1.09004 * 109.46899 * 185.69222 * 7 5 4 38 38 H 1.08997 * 109.46928 * 305.69394 * 7 5 4 39 39 H 1.08992 * 113.76912 * 41.06299 * 11 10 8 40 40 H 1.08994 * 113.87052 * 269.67308 * 11 10 8 41 41 H 1.09003 * 113.73938 * 269.15342 * 12 11 10 42 42 H 1.07997 * 126.91146 * 359.96082 * 14 13 12 43 43 H 1.08996 * 109.47553 * 334.70950 * 16 15 14 44 44 H 1.09008 * 109.46971 * 214.70682 * 16 15 14 45 45 H 0.96994 * 120.00368 * 359.97438 * 17 16 15 46 46 H 0.96992 * 119.99753 * 180.02562 * 21 20 18 47 47 H 1.09002 * 113.76694 * 90.33751 * 28 10 8 48 48 H 1.08997 * 113.77327 * 318.94553 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5824 0.0000 6 1 3.7674 3.1535 0.8423 7 6 3.8077 3.2971 -1.3068 8 6 5.6552 2.4655 0.1232 9 8 6.2356 1.5358 -0.3961 10 7 6.3493 3.3942 0.8104 11 6 7.7629 3.5454 1.2066 12 6 7.4764 5.0570 1.2633 13 7 8.0762 5.7280 2.4192 14 6 7.5359 5.8093 3.6572 15 6 8.4161 6.5125 4.4073 16 6 8.2714 6.8773 5.8622 17 7 8.9561 5.8783 6.6865 18 6 8.9642 6.0048 8.0500 19 1 8.4620 6.8387 8.5180 20 6 9.6178 5.0614 8.8309 21 7 10.2303 4.0455 8.2605 22 14 9.6282 5.2337 10.6908 23 1 8.8737 6.4522 11.0793 24 1 8.9892 4.0405 11.3020 25 1 11.0294 5.3447 11.1699 26 7 9.4425 6.8151 3.6044 27 7 9.2105 6.3360 2.4334 28 6 6.0011 4.6681 1.4690 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6886 1.8464 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.8567 0.6440 -0.8909 35 1 3.8575 0.6435 0.8891 36 1 2.7326 3.4717 -1.3487 37 1 4.3329 4.2512 -1.3509 38 1 4.1084 2.6774 -2.1516 39 1 8.4702 3.2613 0.4276 40 1 7.9987 3.1063 2.1759 41 1 7.6684 5.5756 0.3240 42 1 6.5912 5.3982 3.9809 43 1 7.2144 6.9038 6.1268 44 1 8.7144 7.8578 6.0368 45 1 9.4069 5.1293 6.2663 46 1 10.6867 3.3861 8.8061 47 1 5.7175 4.5584 2.5157 48 1 5.3018 5.2804 0.8995 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105375704.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:47 Heat of formation + Delta-G solvation = 42.082060 kcal Electronic energy + Delta-G solvation = -28390.308863 eV Core-core repulsion = 24290.661217 eV Total energy + Delta-G solvation = -4099.647646 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.31024 -41.62650 -39.59843 -38.77523 -36.78663 -35.89456 -34.76975 -33.56795 -31.62005 -30.92197 -29.72694 -27.86924 -27.42989 -27.25073 -25.93963 -24.84038 -24.66009 -22.62741 -22.19478 -21.51527 -19.91746 -19.41333 -18.82602 -18.24803 -17.62041 -17.35060 -17.05454 -16.62479 -16.50416 -16.32469 -15.94387 -15.79391 -15.50616 -15.13564 -14.99812 -14.92202 -14.52038 -14.28708 -13.98113 -13.89647 -13.81383 -13.44282 -13.35783 -12.97297 -12.80328 -12.78747 -12.69592 -12.59048 -12.47909 -12.24485 -12.02118 -11.94516 -11.92379 -11.85739 -11.78523 -11.07728 -10.96391 -10.91373 -10.56764 -10.21081 -10.01560 -8.99725 -7.92160 -5.22023 0.57397 1.06216 1.34031 1.47323 1.51885 1.53601 1.62745 1.83793 2.60747 2.74822 2.77986 3.08643 3.38713 3.43752 3.56216 3.68996 3.80195 3.95970 3.97106 4.08330 4.17797 4.22589 4.25373 4.29099 4.34059 4.35902 4.41267 4.47145 4.52843 4.56197 4.56566 4.57195 4.68031 4.83607 4.88597 4.89511 4.90513 4.96444 5.15693 5.18978 5.21522 5.29141 5.53648 5.65118 6.25486 6.27885 6.38588 6.91978 7.34757 7.52720 8.07129 8.31722 9.31930 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011268 B = 0.002123 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.347746 B =13183.215195 C =14770.599385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.426 6.426 3 C 0.063 3.937 4 C -0.103 4.103 5 C -0.090 4.090 6 H 0.125 0.875 7 C -0.142 4.142 8 C 0.545 3.455 9 O -0.580 6.580 10 N -0.642 5.642 11 C 0.092 3.908 12 C 0.110 3.890 13 N -0.277 5.277 14 C -0.015 4.015 15 C -0.036 4.036 16 C 0.234 3.766 17 N -0.740 5.740 18 C -0.238 4.238 19 H 0.087 0.913 20 C -0.081 4.081 21 N -0.974 5.974 22 Si 0.977 3.023 23 H -0.259 1.259 24 H -0.293 1.293 25 H -0.299 1.299 26 N -0.297 5.297 27 N -0.109 5.109 28 C 0.110 3.890 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.049 0.951 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.167 0.833 42 H 0.232 0.768 43 H 0.068 0.932 44 H 0.029 0.971 45 H 0.370 0.630 46 H 0.249 0.751 47 H 0.118 0.882 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.376 0.388 -22.360 33.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.346 6.346 3 C -0.013 4.013 4 C -0.141 4.141 5 C -0.111 4.111 6 H 0.143 0.857 7 C -0.199 4.199 8 C 0.336 3.664 9 O -0.458 6.458 10 N -0.378 5.378 11 C -0.032 4.032 12 C 0.009 3.991 13 N -0.072 5.072 14 C -0.166 4.166 15 C -0.174 4.174 16 C 0.106 3.894 17 N -0.383 5.383 18 C -0.370 4.370 19 H 0.105 0.895 20 C -0.273 4.273 21 N -0.625 5.625 22 Si 0.806 3.194 23 H -0.183 1.183 24 H -0.220 1.220 25 H -0.227 1.227 26 N -0.164 5.164 27 N -0.087 5.087 28 C -0.012 4.012 29 H 0.108 0.892 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.113 0.887 40 H 0.102 0.898 41 H 0.185 0.815 42 H 0.248 0.752 43 H 0.086 0.914 44 H 0.046 0.954 45 H 0.201 0.799 46 H 0.058 0.942 47 H 0.136 0.864 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -22.906 0.099 -23.470 32.796 hybrid contribution 0.082 -0.928 1.507 1.771 sum -22.824 -0.829 -21.964 31.687 Atomic orbital electron populations 1.22915 0.79286 1.03663 1.01139 1.87845 1.21674 1.29374 1.95690 1.22631 0.92153 0.84449 1.02092 1.21298 0.94421 0.95608 1.02801 1.21185 0.88140 0.98349 1.03444 0.85662 1.21837 1.04041 1.00330 0.93708 1.20960 0.90361 0.79079 0.75976 1.90731 1.72394 1.34065 1.48649 1.49714 1.10343 1.23862 1.53847 1.23584 0.85244 0.92458 1.01878 1.24119 0.95205 0.91873 0.87946 1.47408 1.13702 1.35859 1.10190 1.23767 1.04039 1.04564 0.84279 1.22309 0.92962 1.03775 0.98387 1.19010 0.97084 0.91890 0.81401 1.42542 1.64724 1.28101 1.02888 1.19746 1.26825 1.06860 0.83550 0.89546 1.25643 1.01187 0.97696 1.02731 1.69863 1.41480 1.15550 1.35591 0.85008 0.76755 0.77638 0.79959 1.18343 1.22017 1.22688 1.75061 1.24129 1.19802 0.97399 1.78202 1.01765 1.11786 1.16974 1.23944 0.93738 0.81845 1.01720 0.89197 0.92925 0.92706 0.91377 0.90970 0.92070 0.92704 0.88658 0.90482 0.93151 0.88703 0.89761 0.81532 0.75192 0.91447 0.95351 0.79905 0.94209 0.86371 0.83344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.48 16 2 O -0.43 -6.96 10.70 -148.98 -1.59 -8.56 16 3 C 0.06 0.67 5.69 71.98 0.41 1.08 16 4 C -0.10 -1.51 4.62 30.59 0.14 -1.37 16 5 C -0.09 -0.90 2.57 -11.54 -0.03 -0.93 16 6 H 0.13 0.47 7.78 -2.39 -0.02 0.45 16 7 C -0.14 -0.86 8.79 71.98 0.63 -0.23 16 8 C 0.54 9.86 7.06 87.66 0.62 10.48 16 9 O -0.58 -16.67 17.10 -3.02 -0.05 -16.72 16 10 N -0.64 -8.83 3.61 -837.17 -3.02 -11.85 16 11 C 0.09 1.58 8.64 86.48 0.75 2.32 16 12 C 0.11 1.40 5.15 46.75 0.24 1.64 16 13 N -0.28 -6.25 3.54 -332.03 -1.18 -7.43 16 14 C -0.02 -0.37 10.72 83.49 0.89 0.53 16 15 C -0.04 -1.25 6.62 41.59 0.28 -0.98 16 16 C 0.23 9.21 6.82 85.63 0.58 9.79 16 17 N -0.74 -37.87 5.59 -347.17 -1.94 -39.81 16 18 C -0.24 -13.14 9.99 84.03 0.84 -12.30 16 19 H 0.09 4.45 7.83 -2.91 -0.02 4.42 16 20 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16 21 N -0.97 -60.85 13.06 21.65 0.28 -60.57 16 22 Si 0.98 46.08 29.55 68.60 2.03 48.10 16 23 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 25 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 26 N -0.30 -11.60 12.41 -48.60 -0.60 -12.20 16 27 N -0.11 -3.53 13.16 37.02 0.49 -3.04 16 28 C 0.11 0.64 7.71 86.48 0.67 1.31 16 29 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.07 0.48 8.14 -2.38 -0.02 0.47 16 33 H 0.07 0.48 6.69 -2.39 -0.02 0.46 16 34 H 0.06 1.18 8.02 -2.39 -0.02 1.16 16 35 H 0.05 1.01 8.14 -2.38 -0.02 1.00 16 36 H 0.09 0.15 6.85 -2.39 -0.02 0.14 16 37 H 0.08 0.27 8.14 -2.38 -0.02 0.25 16 38 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.17 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.23 3.30 6.72 -2.91 -0.02 3.28 16 43 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 45 H 0.37 20.90 7.66 -92.71 -0.71 20.19 16 46 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 47 H 0.12 0.46 6.31 -2.39 -0.02 0.45 16 48 H 0.15 -0.29 8.14 -2.39 -0.02 -0.30 16 Total: -1.00 -86.64 402.95 2.41 -84.23 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.26 Total: 19.22 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 7.74 Total: 8.63 kcal Atomic # 7 Polarization: -128.93 SS G_CDS: -5.97 Total: -134.90 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -1.65 Total: -25.28 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Total: -86.64 2.41 -84.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105375704.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.311 kcal (2) G-P(sol) polarization free energy of solvation -86.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds