Wall clock time and date at job start Tue Mar 31 2020 19:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99846 * 2 1 4 4 C 1.52992 * 109.47221 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47322 * 55.00172 * 4 3 2 6 6 C 1.52999 * 109.47588 * 295.00050 * 4 3 2 7 7 C 1.53007 * 109.47135 * 174.99824 * 4 3 2 8 8 C 1.50706 * 109.46908 * 185.00246 * 7 4 3 9 9 O 1.21271 * 120.00215 * 0.02562 * 8 7 4 10 10 N 1.34773 * 119.99465 * 180.02562 * 8 7 4 11 11 C 1.46501 * 120.00017 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47705 * 179.97438 * 11 10 8 13 13 C 1.35348 * 126.75026 * 94.99599 * 12 11 10 14 14 N 1.35317 * 106.17735 * 179.78015 * 13 12 11 15 15 C 1.46497 * 125.87017 * 180.21003 * 14 13 12 16 16 C 1.53942 * 113.74196 * 13.74138 * 15 14 13 17 17 N 1.47811 * 86.03642 * 222.08692 * 16 15 14 18 18 C 1.36938 * 134.45712 * 204.64673 * 17 16 15 19 19 H 1.08006 * 119.99731 * 179.86683 * 18 17 16 20 20 C 1.38810 * 119.99900 * 359.86196 * 18 17 16 21 21 N 1.31615 * 120.00084 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99728 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47171 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46783 * 120.00280 * 22 20 18 25 25 H 1.48496 * 109.46765 * 240.00006 * 22 20 18 26 26 C 1.47587 * 91.05119 * 24.54774 * 17 16 15 27 27 N 1.28721 * 108.26102 * 0.22816 * 14 13 12 28 28 N 1.28636 * 110.17709 * 0.02562 * 27 14 13 29 29 H 1.09002 * 109.47222 * 60.00155 * 1 2 3 30 30 H 1.09004 * 109.46810 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47681 * 299.99909 * 1 2 3 32 32 H 1.09005 * 109.47348 * 59.99575 * 3 2 1 33 33 H 1.09004 * 109.47060 * 300.00000 * 3 2 1 34 34 H 1.09000 * 109.47524 * 180.02562 * 6 4 3 35 35 H 1.08998 * 109.47182 * 300.00068 * 6 4 3 36 36 H 1.08998 * 109.47092 * 59.99504 * 6 4 3 37 37 H 1.08998 * 109.47160 * 65.00657 * 7 4 3 38 38 H 1.08996 * 109.47236 * 305.00045 * 7 4 3 39 39 H 0.96996 * 120.00676 * 359.97438 * 10 8 7 40 40 H 1.09004 * 109.46926 * 59.99730 * 11 10 8 41 41 H 1.09001 * 109.47077 * 300.00602 * 11 10 8 42 42 H 1.08002 * 126.91502 * 0.05047 * 13 12 11 43 43 H 1.09004 * 112.94415 * 145.33322 * 15 14 13 44 44 H 1.09001 * 113.77001 * 336.34585 * 16 15 14 45 45 H 1.08996 * 113.77272 * 107.74936 * 16 15 14 46 46 H 0.97005 * 119.99940 * 180.02562 * 21 20 18 47 47 H 1.09000 * 113.76860 * 221.15477 * 26 17 16 48 48 H 1.09000 * 113.86642 * 89.77210 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1847 0.0006 5 1 3.8514 0.5683 -0.8410 6 6 3.9952 0.5370 1.3082 7 6 4.1572 2.5771 -0.1251 8 6 5.6538 2.4495 -0.2481 9 8 6.1719 1.3531 -0.2367 10 7 6.4164 3.5539 -0.3706 11 6 7.8713 3.4301 -0.4896 12 6 8.4838 4.8013 -0.6136 13 6 8.9916 5.5552 0.3893 14 7 9.4327 6.6985 -0.1846 15 6 10.0679 7.8194 0.5127 16 6 10.5152 7.4837 1.9470 17 7 9.9822 8.8125 2.3145 18 6 10.2373 9.7027 3.3233 19 1 9.6959 10.6361 3.3696 20 6 11.1916 9.4053 4.2865 21 7 11.8516 8.2680 4.2298 22 14 11.5391 10.6193 5.6631 23 1 10.6706 11.8129 5.5014 24 1 11.2594 9.9765 6.9722 25 1 12.9641 11.0337 5.6096 26 6 9.0670 8.7958 1.1568 27 7 9.1980 6.6320 -1.4485 28 7 8.6294 5.5145 -1.7360 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6885 1.8465 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 5.0819 0.4514 1.3089 35 1 3.6792 1.1534 2.1498 36 1 3.5522 -0.4548 1.3979 37 1 3.9142 3.1648 0.7600 38 1 3.7609 3.0733 -1.0109 39 1 6.0020 4.4309 -0.3801 40 1 8.1147 2.8424 -1.3748 41 1 8.2673 2.9335 0.3963 42 1 9.0394 5.2947 1.4364 43 1 10.8374 8.3096 -0.0836 44 1 9.9698 6.6527 2.3942 45 1 11.5956 7.3956 2.0610 46 1 12.5183 8.0600 4.9031 47 1 8.9934 9.7532 0.6410 48 1 8.0947 8.3515 1.3696 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107226312.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:28 Heat of formation + Delta-G solvation = 65.642138 kcal Electronic energy + Delta-G solvation = -28217.044259 eV Core-core repulsion = 24118.418255 eV Total energy + Delta-G solvation = -4098.626005 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.10629 -40.03982 -38.43611 -38.32384 -35.57525 -34.69472 -33.44699 -32.03911 -31.37589 -28.82558 -27.98506 -27.57013 -26.43474 -25.56431 -25.23077 -24.41029 -21.97972 -21.41349 -21.00981 -20.15389 -19.65378 -17.80949 -17.29775 -16.77118 -16.66193 -16.35645 -16.23571 -15.70886 -15.53551 -15.28171 -15.14778 -14.73003 -14.39668 -14.11791 -13.77285 -13.47497 -13.32775 -13.12962 -12.94458 -12.50545 -12.41112 -12.18368 -12.14317 -11.87930 -11.86701 -11.43345 -11.33422 -11.21672 -11.16604 -11.01657 -10.98663 -10.93065 -10.56117 -10.23908 -10.02828 -10.00108 -9.92049 -9.59245 -9.17882 -9.14150 -9.07984 -7.29653 -6.08378 -3.43863 1.77948 2.39222 2.51879 2.60538 3.15717 3.23439 3.29383 3.31753 3.58523 4.18621 4.32344 4.43816 4.55688 4.67809 4.70414 4.70792 4.85437 4.92051 4.94732 5.02469 5.07259 5.09966 5.12267 5.17047 5.24430 5.30082 5.37146 5.48504 5.49562 5.58538 5.60750 5.72805 5.92921 6.01202 6.06631 6.06941 6.12525 6.19644 6.26343 6.35859 6.49874 6.76035 6.80790 6.99104 7.12903 7.35911 7.64144 8.09189 8.69979 8.72002 9.38244 10.15378 11.08908 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014391 B = 0.001890 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.245113 B =14809.956135 C =15900.719346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.065 3.935 4 C -0.074 4.074 5 H 0.088 0.912 6 C -0.150 4.150 7 C -0.137 4.137 8 C 0.516 3.484 9 O -0.536 6.536 10 N -0.724 5.724 11 C 0.215 3.785 12 C -0.063 4.063 13 C -0.015 4.015 14 N -0.265 5.265 15 C 0.077 3.923 16 C 0.163 3.837 17 N -0.598 5.598 18 C -0.233 4.233 19 H 0.088 0.912 20 C -0.001 4.001 21 N -0.919 5.919 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.287 1.287 26 C 0.120 3.880 27 N -0.089 5.089 28 N -0.268 5.268 29 H 0.040 0.960 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.046 0.954 36 H 0.059 0.941 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.403 0.597 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.191 0.809 43 H 0.132 0.868 44 H 0.042 0.958 45 H 0.092 0.908 46 H 0.259 0.741 47 H 0.062 0.938 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.132 -11.232 -7.535 21.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.012 4.012 4 C -0.093 4.093 5 H 0.106 0.894 6 C -0.207 4.207 7 C -0.177 4.177 8 C 0.303 3.697 9 O -0.413 6.413 10 N -0.377 5.377 11 C 0.090 3.910 12 C -0.202 4.202 13 C -0.169 4.169 14 N -0.057 5.057 15 C -0.025 4.025 16 C 0.037 3.963 17 N -0.325 5.325 18 C -0.359 4.359 19 H 0.106 0.894 20 C -0.198 4.198 21 N -0.564 5.564 22 Si 0.749 3.251 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.214 1.214 26 C -0.007 4.007 27 N -0.068 5.068 28 N -0.134 5.134 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.237 0.763 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.208 0.792 43 H 0.150 0.850 44 H 0.059 0.941 45 H 0.110 0.890 46 H 0.069 0.931 47 H 0.080 0.920 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -16.312 -11.283 -8.581 21.611 hybrid contribution -0.252 0.980 1.923 2.173 sum -16.564 -10.303 -6.658 20.612 Atomic orbital electron populations 1.22740 0.81125 1.02757 0.99914 1.87890 1.19510 1.27890 1.95380 1.22611 0.93783 0.84709 1.00113 1.20816 0.91948 0.95238 1.01277 0.89414 1.21895 1.03198 1.00605 0.94985 1.21652 0.92271 0.99205 1.04580 1.20491 0.89221 0.84084 0.75917 1.90691 1.74923 1.26106 1.49550 1.46085 1.07261 1.09485 1.74847 1.19274 0.78764 0.89723 1.03233 1.21736 1.08839 0.99450 0.90168 1.23511 1.03570 0.87968 1.01821 1.47918 1.37180 1.14493 1.06132 1.25293 0.97733 0.85170 0.94303 1.22749 1.01461 0.89020 0.83107 1.45677 1.41317 1.16948 1.28562 1.19051 1.18201 0.97265 1.01428 0.89429 1.24853 0.98468 0.97520 0.98992 1.69768 1.27318 1.22855 1.36500 0.85947 0.77997 0.79853 0.81337 1.20203 1.21426 1.21351 1.22927 0.93189 0.96504 0.88092 1.78277 1.16373 1.15708 0.96441 1.75021 1.14202 0.99402 1.24792 0.94131 0.89647 0.94112 0.93180 0.93304 0.90518 0.93531 0.92191 0.88552 0.88669 0.76330 0.89783 0.89636 0.79230 0.85030 0.94087 0.89007 0.93118 0.91973 0.93990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.59 10.24 -35.23 -0.36 -3.95 16 3 C 0.06 0.49 5.32 37.15 0.20 0.68 16 4 C -0.07 -0.65 2.27 -90.62 -0.21 -0.85 16 5 H 0.09 0.92 7.95 -51.93 -0.41 0.51 16 6 C -0.15 -1.47 8.83 37.16 0.33 -1.14 16 7 C -0.14 -1.01 5.18 -27.88 -0.14 -1.15 16 8 C 0.52 5.45 7.55 -10.98 -0.08 5.37 16 9 O -0.54 -7.49 13.97 5.56 0.08 -7.41 16 10 N -0.72 -7.25 5.55 -61.47 -0.34 -7.59 16 11 C 0.22 2.47 6.23 -5.20 -0.03 2.44 16 12 C -0.06 -0.86 6.61 -82.78 -0.55 -1.41 16 13 C -0.01 -0.21 10.72 -17.05 -0.18 -0.39 16 14 N -0.26 -4.20 3.54 -56.31 -0.20 -4.40 16 15 C 0.08 1.30 5.14 -70.15 -0.36 0.94 16 16 C 0.16 3.28 6.90 -2.84 -0.02 3.26 16 17 N -0.60 -13.56 3.70 -177.89 -0.66 -14.22 16 18 C -0.23 -5.91 10.70 -15.06 -0.16 -6.07 16 19 H 0.09 2.15 7.83 -52.48 -0.41 1.74 16 20 C 0.00 -0.02 5.50 -17.43 -0.10 -0.12 16 21 N -0.92 -24.83 11.39 55.49 0.63 -24.20 16 22 Si 0.92 20.48 29.55 -169.99 -5.02 15.46 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 26 C 0.12 2.17 8.74 -2.96 -0.03 2.14 16 27 N -0.09 -1.51 13.17 60.35 0.79 -0.72 16 28 N -0.27 -4.34 12.41 33.29 0.41 -3.92 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.90 5.95 -51.93 -0.31 0.59 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.61 7.82 -51.93 -0.41 0.21 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.40 3.47 8.46 -40.82 -0.35 3.13 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.19 2.35 6.73 -52.49 -0.35 2.00 16 43 H 0.13 2.16 8.14 -51.93 -0.42 1.73 16 44 H 0.04 0.80 6.31 -51.93 -0.33 0.48 16 45 H 0.09 2.07 7.16 -51.93 -0.37 1.69 16 46 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 48 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 397.92 15.07 6.00 6.00 Total: -1.00 -31.05 397.92 -6.46 -37.51 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -7.57 Total: 2.45 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -0.22 Total: 5.00 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: 0.64 Total: -55.06 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: -0.28 Total: -11.36 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.05 -6.46 -37.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107226312.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.153 kcal (2) G-P(sol) polarization free energy of solvation -31.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds