Wall clock time and date at job start Tue Mar 31 2020 19:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99846 * 2 1 4 4 C 1.52992 * 109.47221 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47322 * 55.00172 * 4 3 2 6 6 C 1.52999 * 109.47588 * 295.00050 * 4 3 2 7 7 C 1.53007 * 109.47135 * 174.99824 * 4 3 2 8 8 C 1.50706 * 109.46908 * 185.00246 * 7 4 3 9 9 O 1.21271 * 120.00215 * 0.02562 * 8 7 4 10 10 N 1.34773 * 119.99465 * 180.02562 * 8 7 4 11 11 C 1.46501 * 120.00017 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47705 * 179.97438 * 11 10 8 13 13 C 1.35348 * 126.75026 * 94.99599 * 12 11 10 14 14 N 1.35317 * 106.17735 * 179.78015 * 13 12 11 15 15 C 1.46497 * 125.87017 * 180.21003 * 14 13 12 16 16 C 1.53942 * 113.74196 * 13.74138 * 15 14 13 17 17 N 1.47811 * 86.03642 * 222.08692 * 16 15 14 18 18 C 1.36938 * 134.45712 * 204.64673 * 17 16 15 19 19 H 1.08006 * 119.99731 * 179.86683 * 18 17 16 20 20 C 1.38810 * 119.99900 * 359.86196 * 18 17 16 21 21 N 1.31615 * 120.00084 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99728 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47171 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46783 * 120.00280 * 22 20 18 25 25 H 1.48496 * 109.46765 * 240.00006 * 22 20 18 26 26 C 1.47587 * 91.05119 * 24.54774 * 17 16 15 27 27 N 1.28721 * 108.26102 * 0.22816 * 14 13 12 28 28 N 1.28636 * 110.17709 * 0.02562 * 27 14 13 29 29 H 1.09002 * 109.47222 * 60.00155 * 1 2 3 30 30 H 1.09004 * 109.46810 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47681 * 299.99909 * 1 2 3 32 32 H 1.09005 * 109.47348 * 59.99575 * 3 2 1 33 33 H 1.09004 * 109.47060 * 300.00000 * 3 2 1 34 34 H 1.09000 * 109.47524 * 180.02562 * 6 4 3 35 35 H 1.08998 * 109.47182 * 300.00068 * 6 4 3 36 36 H 1.08998 * 109.47092 * 59.99504 * 6 4 3 37 37 H 1.08998 * 109.47160 * 65.00657 * 7 4 3 38 38 H 1.08996 * 109.47236 * 305.00045 * 7 4 3 39 39 H 0.96996 * 120.00676 * 359.97438 * 10 8 7 40 40 H 1.09004 * 109.46926 * 59.99730 * 11 10 8 41 41 H 1.09001 * 109.47077 * 300.00602 * 11 10 8 42 42 H 1.08002 * 126.91502 * 0.05047 * 13 12 11 43 43 H 1.09004 * 112.94415 * 145.33322 * 15 14 13 44 44 H 1.09001 * 113.77001 * 336.34585 * 16 15 14 45 45 H 1.08996 * 113.77272 * 107.74936 * 16 15 14 46 46 H 0.97005 * 119.99940 * 180.02562 * 21 20 18 47 47 H 1.09000 * 113.76860 * 221.15477 * 26 17 16 48 48 H 1.09000 * 113.86642 * 89.77210 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1847 0.0006 5 1 3.8514 0.5683 -0.8410 6 6 3.9952 0.5370 1.3082 7 6 4.1572 2.5771 -0.1251 8 6 5.6538 2.4495 -0.2481 9 8 6.1719 1.3531 -0.2367 10 7 6.4164 3.5539 -0.3706 11 6 7.8713 3.4301 -0.4896 12 6 8.4838 4.8013 -0.6136 13 6 8.9916 5.5552 0.3893 14 7 9.4327 6.6985 -0.1846 15 6 10.0679 7.8194 0.5127 16 6 10.5152 7.4837 1.9470 17 7 9.9822 8.8125 2.3145 18 6 10.2373 9.7027 3.3233 19 1 9.6959 10.6361 3.3696 20 6 11.1916 9.4053 4.2865 21 7 11.8516 8.2680 4.2298 22 14 11.5391 10.6193 5.6631 23 1 10.6706 11.8129 5.5014 24 1 11.2594 9.9765 6.9722 25 1 12.9641 11.0337 5.6096 26 6 9.0670 8.7958 1.1568 27 7 9.1980 6.6320 -1.4485 28 7 8.6294 5.5145 -1.7360 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6885 1.8465 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 5.0819 0.4514 1.3089 35 1 3.6792 1.1534 2.1498 36 1 3.5522 -0.4548 1.3979 37 1 3.9142 3.1648 0.7600 38 1 3.7609 3.0733 -1.0109 39 1 6.0020 4.4309 -0.3801 40 1 8.1147 2.8424 -1.3748 41 1 8.2673 2.9335 0.3963 42 1 9.0394 5.2947 1.4364 43 1 10.8374 8.3096 -0.0836 44 1 9.9698 6.6527 2.3942 45 1 11.5956 7.3956 2.0610 46 1 12.5183 8.0600 4.9031 47 1 8.9934 9.7532 0.6410 48 1 8.0947 8.3515 1.3696 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107226312.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:27 Heat of formation + Delta-G solvation = 44.014402 kcal Electronic energy + Delta-G solvation = -28217.982108 eV Core-core repulsion = 24118.418255 eV Total energy + Delta-G solvation = -4099.563854 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.34338 -40.87823 -39.93613 -38.96360 -36.46813 -35.48367 -34.94534 -33.65607 -32.50713 -29.76155 -29.52583 -28.16590 -27.37517 -26.79241 -26.15868 -25.92767 -23.41766 -22.46634 -21.92784 -21.13362 -20.88504 -19.05367 -18.60002 -18.00546 -17.55927 -17.18025 -16.97903 -16.92652 -16.56635 -16.48318 -15.97104 -15.89432 -15.71949 -15.10597 -14.85283 -14.63978 -14.37360 -14.21771 -13.95925 -13.70584 -13.55988 -13.38815 -13.11203 -13.00009 -12.90592 -12.79698 -12.62227 -12.43439 -12.40061 -12.06705 -12.04045 -11.82222 -11.77429 -11.72382 -11.62451 -11.06617 -10.93919 -10.83156 -10.55283 -10.24846 -10.06603 -9.10439 -8.00987 -5.36070 0.57649 1.25581 1.30030 1.48076 1.49919 1.58435 1.70973 2.35902 2.43004 2.97652 3.08099 3.13348 3.31834 3.34863 3.73046 3.76473 3.92194 3.94659 4.00697 4.12078 4.16626 4.26222 4.48643 4.51614 4.52454 4.54105 4.58364 4.61895 4.63362 4.70327 4.72342 4.77947 4.89465 4.93342 4.97906 5.01693 5.06428 5.11062 5.14952 5.33884 5.37350 5.39500 5.53647 5.66923 5.77643 6.30334 6.57273 6.80749 7.29056 7.46737 7.49176 8.33980 9.15992 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014391 B = 0.001890 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.245113 B =14809.956135 C =15900.719346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.065 3.935 4 C -0.073 4.073 5 H 0.063 0.937 6 C -0.145 4.145 7 C -0.129 4.129 8 C 0.514 3.486 9 O -0.575 6.575 10 N -0.717 5.717 11 C 0.219 3.781 12 C -0.048 4.048 13 C -0.014 4.014 14 N -0.268 5.268 15 C 0.104 3.896 16 C 0.165 3.835 17 N -0.628 5.628 18 C -0.237 4.237 19 H 0.092 0.908 20 C -0.056 4.056 21 N -0.949 5.949 22 Si 0.979 3.021 23 H -0.264 1.264 24 H -0.293 1.293 25 H -0.292 1.292 26 C 0.126 3.874 27 N -0.109 5.109 28 N -0.281 5.281 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.048 0.952 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.412 0.588 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.207 0.793 43 H 0.137 0.863 44 H 0.048 0.952 45 H 0.063 0.937 46 H 0.253 0.747 47 H 0.076 0.924 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.133 -10.377 -7.707 23.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.011 4.011 4 C -0.092 4.092 5 H 0.082 0.918 6 C -0.203 4.203 7 C -0.168 4.168 8 C 0.302 3.698 9 O -0.454 6.454 10 N -0.370 5.370 11 C 0.094 3.906 12 C -0.188 4.188 13 C -0.167 4.167 14 N -0.061 5.061 15 C 0.002 3.998 16 C 0.038 3.962 17 N -0.355 5.355 18 C -0.365 4.365 19 H 0.109 0.891 20 C -0.250 4.250 21 N -0.596 5.596 22 Si 0.807 3.193 23 H -0.188 1.188 24 H -0.220 1.220 25 H -0.219 1.219 26 C 0.000 4.000 27 N -0.087 5.087 28 N -0.148 5.148 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.248 0.752 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.224 0.776 43 H 0.155 0.845 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.062 0.938 47 H 0.094 0.906 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.357 -10.402 -8.793 22.858 hybrid contribution 0.304 0.624 1.904 2.026 sum -18.054 -9.778 -6.890 21.656 Atomic orbital electron populations 1.22898 0.79644 1.03579 1.00892 1.87851 1.21266 1.29045 1.95615 1.22643 0.92478 0.84426 1.01546 1.20770 0.93277 0.95621 0.99528 0.91808 1.21826 1.01562 1.00544 0.96338 1.21661 0.89476 0.98789 1.06880 1.21073 0.90527 0.83358 0.74812 1.90687 1.75846 1.27585 1.51304 1.45997 1.06538 1.10001 1.74463 1.19220 0.79779 0.88320 1.03325 1.21939 1.07899 0.99684 0.89228 1.23835 1.02876 0.87334 1.02662 1.47715 1.37568 1.14708 1.06101 1.24691 0.97291 0.84911 0.92898 1.22621 0.99818 0.88514 0.85217 1.45908 1.42909 1.17516 1.29141 1.19380 1.17489 0.97838 1.01748 0.89073 1.25584 0.98948 0.99122 1.01312 1.69919 1.28122 1.24460 1.37131 0.85015 0.77440 0.78386 0.78481 1.18849 1.21991 1.21936 1.23018 0.93104 0.97542 0.86340 1.78286 1.17423 1.16349 0.96679 1.75010 1.14466 0.99564 1.25743 0.93076 0.89069 0.93133 0.91760 0.91700 0.92757 0.92219 0.93294 0.86129 0.86139 0.75227 0.90504 0.88863 0.77628 0.84495 0.93460 0.91863 0.93815 0.90602 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.42 -7.27 10.24 -148.98 -1.53 -8.80 16 3 C 0.07 0.85 5.32 71.98 0.38 1.23 16 4 C -0.07 -1.19 2.27 -10.79 -0.02 -1.22 16 5 H 0.06 1.35 7.95 -2.38 -0.02 1.33 16 6 C -0.15 -2.80 8.83 71.98 0.64 -2.16 16 7 C -0.13 -1.57 5.18 29.85 0.15 -1.42 16 8 C 0.51 10.12 7.55 87.66 0.66 10.78 16 9 O -0.57 -15.99 13.97 -3.00 -0.04 -16.03 16 10 N -0.72 -12.98 5.55 -466.80 -2.59 -15.57 16 11 C 0.22 4.72 6.23 85.63 0.53 5.26 16 12 C -0.05 -1.23 6.61 41.59 0.28 -0.96 16 13 C -0.01 -0.36 10.72 83.49 0.89 0.53 16 14 N -0.27 -8.08 3.54 -332.05 -1.18 -9.26 16 15 C 0.10 3.38 5.14 46.75 0.24 3.62 16 16 C 0.16 6.56 6.90 86.44 0.60 7.16 16 17 N -0.63 -27.91 3.70 -716.72 -2.65 -30.56 16 18 C -0.24 -11.88 10.70 84.03 0.90 -10.98 16 19 H 0.09 4.37 7.83 -2.91 -0.02 4.35 16 20 C -0.06 -2.88 5.50 84.86 0.47 -2.41 16 21 N -0.95 -51.90 11.39 21.65 0.25 -51.66 16 22 Si 0.98 42.04 29.55 68.60 2.03 44.07 16 23 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 24 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 25 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 26 C 0.13 4.30 8.74 86.48 0.76 5.06 16 27 N -0.11 -3.54 13.17 37.02 0.49 -3.05 16 28 N -0.28 -8.69 12.41 -48.60 -0.60 -9.30 16 29 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.05 1.29 5.95 -2.39 -0.01 1.28 16 35 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 36 H 0.05 1.02 7.82 -2.39 -0.02 1.00 16 37 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.41 6.01 8.46 -92.71 -0.78 5.22 16 40 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.21 4.68 6.73 -2.91 -0.02 4.66 16 43 H 0.14 4.32 8.14 -2.38 -0.02 4.30 16 44 H 0.05 1.82 6.31 -2.39 -0.02 1.80 16 45 H 0.06 2.89 7.16 -2.39 -0.02 2.88 16 46 H 0.25 13.53 8.31 -92.70 -0.77 12.76 16 47 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 48 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -67.20 397.92 2.08 -65.13 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.19 Total: 19.02 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 7.72 Total: 16.01 kcal Atomic # 7 Polarization: -113.10 SS G_CDS: -6.29 Total: -119.39 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -1.57 Total: -24.83 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -67.20 2.08 -65.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107226312.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.142 kcal (2) G-P(sol) polarization free energy of solvation -67.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds