Wall clock time and date at job start Tue Mar 31 2020 19:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00015 * 2 1 4 4 C 1.53000 * 109.47027 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47830 * 305.00372 * 4 3 2 6 6 C 1.53005 * 109.47279 * 65.00512 * 4 3 2 7 7 C 1.53007 * 109.47081 * 185.00187 * 4 3 2 8 8 C 1.50706 * 109.46908 * 175.00197 * 7 4 3 9 9 O 1.21271 * 120.00215 * 0.02562 * 8 7 4 10 10 N 1.34773 * 119.99465 * 180.02562 * 8 7 4 11 11 C 1.46501 * 120.00017 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47705 * 179.97438 * 11 10 8 13 13 C 1.35348 * 126.75026 * 94.99599 * 12 11 10 14 14 N 1.35317 * 106.17735 * 179.78015 * 13 12 11 15 15 C 1.46497 * 125.87017 * 180.21003 * 14 13 12 16 16 C 1.53942 * 113.74196 * 13.74138 * 15 14 13 17 17 N 1.47811 * 86.03642 * 222.08692 * 16 15 14 18 18 C 1.36938 * 134.45712 * 204.64673 * 17 16 15 19 19 H 1.08006 * 119.99731 * 179.86683 * 18 17 16 20 20 C 1.38810 * 119.99900 * 359.86196 * 18 17 16 21 21 N 1.31615 * 120.00084 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99728 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47171 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46783 * 120.00280 * 22 20 18 25 25 H 1.48496 * 109.46765 * 240.00006 * 22 20 18 26 26 C 1.47587 * 91.05119 * 24.54774 * 17 16 15 27 27 N 1.28721 * 108.26102 * 0.22816 * 14 13 12 28 28 N 1.28636 * 110.17709 * 0.02562 * 27 14 13 29 29 H 1.09000 * 109.47198 * 59.99785 * 1 2 3 30 30 H 1.08994 * 109.47344 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47214 * 299.99865 * 1 2 3 32 32 H 1.09000 * 109.46891 * 60.00672 * 3 2 1 33 33 H 1.08997 * 109.47526 * 299.99854 * 3 2 1 34 34 H 1.08998 * 109.46618 * 299.99975 * 6 4 3 35 35 H 1.09007 * 109.46695 * 59.99801 * 6 4 3 36 36 H 1.08996 * 109.47416 * 179.97438 * 6 4 3 37 37 H 1.08998 * 109.47160 * 55.00608 * 7 4 3 38 38 H 1.08996 * 109.47236 * 294.99996 * 7 4 3 39 39 H 0.96996 * 120.00676 * 359.97438 * 10 8 7 40 40 H 1.09004 * 109.46926 * 59.99730 * 11 10 8 41 41 H 1.09001 * 109.47077 * 300.00602 * 11 10 8 42 42 H 1.08002 * 126.91502 * 0.05047 * 13 12 11 43 43 H 1.09004 * 112.94415 * 145.33322 * 15 14 13 44 44 H 1.09001 * 113.77001 * 336.34585 * 16 15 14 45 45 H 1.08996 * 113.77272 * 107.74936 * 16 15 14 46 46 H 0.97005 * 119.99940 * 180.02562 * 21 20 18 47 47 H 1.09000 * 113.76860 * 221.15477 * 26 17 16 48 48 H 1.09000 * 113.86642 * 89.77210 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8508 0.5684 0.8426 6 6 3.9963 0.5365 -1.3065 7 6 4.1573 2.5769 0.1264 8 6 5.6538 2.4493 0.2505 9 8 6.1719 1.3529 0.2390 10 7 6.4162 3.5537 0.3743 11 6 7.8709 3.4298 0.4955 12 6 8.4834 4.8011 0.6193 13 6 8.8043 5.4442 1.7662 14 7 9.3274 6.6361 1.3964 15 6 9.8231 7.6744 2.3032 16 6 10.0199 7.1903 3.7512 17 7 9.4198 8.4794 4.1551 18 6 9.4896 9.2597 5.2782 19 1 8.9400 10.1883 5.3255 20 6 10.2665 8.8572 6.3558 21 7 10.9365 7.7258 6.2979 22 14 10.3611 9.9214 7.8882 23 1 9.5227 11.1329 7.7020 24 1 9.8659 9.1510 9.0571 25 1 11.7702 10.3265 8.1232 26 6 8.7177 8.5888 2.8615 27 7 9.3143 6.7009 0.1109 28 7 8.8137 5.6236 -0.3826 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.5532 -0.4554 -1.3961 35 1 3.6809 1.1528 -2.1485 36 1 5.0828 0.4508 -1.3062 37 1 3.7603 3.0735 1.0118 38 1 3.9149 3.1644 -0.7591 39 1 6.0019 4.4307 0.3832 40 1 8.2683 2.9333 -0.3898 41 1 8.1129 2.8420 1.3810 42 1 8.6735 5.0779 2.7737 43 1 10.6795 8.2161 1.9013 44 1 9.4131 6.3229 4.0107 45 1 11.0653 7.0815 4.0399 46 1 11.4791 7.4444 7.0511 47 1 8.7255 9.5945 2.4412 48 1 7.7273 8.1338 2.8574 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107226314.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:30 Heat of formation + Delta-G solvation = 65.653615 kcal Electronic energy + Delta-G solvation = -28197.220023 eV Core-core repulsion = 24098.594516 eV Total energy + Delta-G solvation = -4098.625507 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.10626 -40.04016 -38.43592 -38.32313 -35.57593 -34.69545 -33.44708 -32.03926 -31.37572 -28.82693 -27.98516 -27.57317 -26.43610 -25.56381 -25.23073 -24.41048 -21.98093 -21.41093 -21.01155 -20.15481 -19.65631 -17.80923 -17.29723 -16.76410 -16.66152 -16.35545 -16.24480 -15.71821 -15.51689 -15.28065 -15.14697 -14.77854 -14.29338 -14.10305 -13.94486 -13.38889 -13.27188 -13.15858 -12.96479 -12.51007 -12.41324 -12.19337 -12.14011 -11.88881 -11.86172 -11.41902 -11.35203 -11.21617 -11.16474 -11.01610 -10.98035 -10.94762 -10.55609 -10.24049 -10.02566 -9.99920 -9.91998 -9.59320 -9.18925 -9.13680 -9.07620 -7.29672 -6.08384 -3.43877 1.77944 2.39220 2.51855 2.60533 3.15790 3.23440 3.29366 3.31750 3.58630 4.18611 4.32303 4.43825 4.55644 4.67817 4.70403 4.70903 4.84648 4.93007 4.94846 5.03120 5.07441 5.08929 5.12671 5.17050 5.24423 5.30366 5.37151 5.47432 5.49570 5.58501 5.60376 5.72714 5.91982 6.01181 6.06192 6.06906 6.12560 6.19208 6.26274 6.35069 6.49876 6.76031 6.81009 6.99102 7.12895 7.35899 7.64133 8.09169 8.69974 8.71992 9.38228 10.15364 11.08900 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014245 B = 0.001889 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.083836 B =14820.415834 C =16052.191100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.065 3.935 4 C -0.074 4.074 5 H 0.088 0.912 6 C -0.149 4.149 7 C -0.137 4.137 8 C 0.516 3.484 9 O -0.536 6.536 10 N -0.724 5.724 11 C 0.215 3.785 12 C -0.063 4.063 13 C -0.015 4.015 14 N -0.265 5.265 15 C 0.077 3.923 16 C 0.163 3.837 17 N -0.598 5.598 18 C -0.233 4.233 19 H 0.088 0.912 20 C -0.001 4.001 21 N -0.919 5.919 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.287 1.287 26 C 0.120 3.880 27 N -0.089 5.089 28 N -0.267 5.267 29 H 0.040 0.960 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.045 0.955 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.403 0.597 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.191 0.809 43 H 0.132 0.868 44 H 0.042 0.958 45 H 0.092 0.908 46 H 0.259 0.741 47 H 0.062 0.938 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.454 -10.238 -11.778 21.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.012 4.012 4 C -0.093 4.093 5 H 0.106 0.894 6 C -0.206 4.206 7 C -0.177 4.177 8 C 0.303 3.697 9 O -0.413 6.413 10 N -0.377 5.377 11 C 0.090 3.910 12 C -0.202 4.202 13 C -0.169 4.169 14 N -0.057 5.057 15 C -0.025 4.025 16 C 0.037 3.963 17 N -0.325 5.325 18 C -0.359 4.359 19 H 0.106 0.894 20 C -0.198 4.198 21 N -0.564 5.564 22 Si 0.749 3.251 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.214 1.214 26 C -0.007 4.007 27 N -0.068 5.068 28 N -0.134 5.134 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.237 0.763 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.208 0.792 43 H 0.150 0.850 44 H 0.059 0.941 45 H 0.110 0.890 46 H 0.069 0.931 47 H 0.080 0.920 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -14.465 -10.189 -12.674 21.764 hybrid contribution -0.592 0.779 1.993 2.220 sum -15.057 -9.410 -10.681 20.721 Atomic orbital electron populations 1.22737 0.81121 1.02761 0.99916 1.87888 1.19515 1.27887 1.95380 1.22610 0.93773 0.84715 1.00115 1.20820 0.91957 0.95251 1.01278 0.89361 1.21893 1.03176 1.00576 0.94988 1.21651 0.92274 0.99197 1.04583 1.20491 0.89223 0.84087 0.75913 1.90691 1.74925 1.26114 1.49539 1.46085 1.07251 1.09479 1.74863 1.19275 0.78741 0.89598 1.03381 1.21736 1.09415 0.99314 0.89729 1.23512 1.03548 0.87807 1.02008 1.47918 1.37827 1.13732 1.06246 1.25293 0.99983 0.88430 0.88793 1.22749 1.01289 0.89684 0.82617 1.45677 1.52391 1.20790 1.13650 1.19050 1.25401 1.01047 0.90441 0.89428 1.24855 0.99087 0.97425 0.98481 1.69768 1.33077 1.21871 1.31726 0.85946 0.77663 0.79251 0.82267 1.20205 1.21421 1.21352 1.22927 0.93703 0.97393 0.86688 1.78277 1.19035 1.18082 0.91405 1.75021 1.13088 0.98409 1.26896 0.94146 0.89645 0.94096 0.93261 0.93219 0.92197 0.93597 0.90539 0.88616 0.88603 0.76330 0.89784 0.89633 0.79230 0.85028 0.94087 0.89007 0.93117 0.91972 0.93990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.60 10.24 -35.23 -0.36 -3.96 16 3 C 0.06 0.49 5.32 37.16 0.20 0.68 16 4 C -0.07 -0.65 2.28 -90.61 -0.21 -0.86 16 5 H 0.09 0.93 7.95 -51.93 -0.41 0.52 16 6 C -0.15 -1.44 8.83 37.16 0.33 -1.11 16 7 C -0.14 -1.01 5.18 -27.88 -0.14 -1.15 16 8 C 0.52 5.45 7.55 -10.98 -0.08 5.37 16 9 O -0.54 -7.49 13.96 5.56 0.08 -7.41 16 10 N -0.72 -7.25 5.55 -61.47 -0.34 -7.59 16 11 C 0.22 2.47 6.23 -5.20 -0.03 2.44 16 12 C -0.06 -0.86 6.61 -82.78 -0.55 -1.41 16 13 C -0.02 -0.21 10.72 -17.05 -0.18 -0.39 16 14 N -0.26 -4.21 3.54 -56.31 -0.20 -4.41 16 15 C 0.08 1.30 5.14 -70.15 -0.36 0.94 16 16 C 0.16 3.29 6.90 -2.84 -0.02 3.27 16 17 N -0.60 -13.56 3.70 -177.89 -0.66 -14.22 16 18 C -0.23 -5.91 10.70 -15.06 -0.16 -6.07 16 19 H 0.09 2.15 7.83 -52.48 -0.41 1.74 16 20 C 0.00 -0.02 5.50 -17.43 -0.10 -0.12 16 21 N -0.92 -24.84 11.39 55.49 0.63 -24.21 16 22 Si 0.92 20.49 29.55 -169.99 -5.02 15.46 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 26 C 0.12 2.17 8.74 -2.96 -0.03 2.14 16 27 N -0.09 -1.51 13.17 60.35 0.79 -0.72 16 28 N -0.27 -4.33 12.41 33.29 0.41 -3.92 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.60 7.82 -51.93 -0.41 0.20 16 35 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.89 5.95 -51.93 -0.31 0.58 16 37 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.40 3.47 8.46 -40.82 -0.35 3.13 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.19 2.36 6.73 -52.49 -0.35 2.00 16 43 H 0.13 2.16 8.14 -51.93 -0.42 1.73 16 44 H 0.04 0.81 6.31 -51.93 -0.33 0.48 16 45 H 0.09 2.07 7.16 -51.93 -0.37 1.69 16 46 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 397.91 15.07 6.00 6.00 Total: -1.00 -31.06 397.91 -6.46 -37.52 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -7.57 Total: 2.44 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -0.22 Total: 5.03 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: 0.64 Total: -55.07 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -0.28 Total: -11.37 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.06 -6.46 -37.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107226314.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.170 kcal (2) G-P(sol) polarization free energy of solvation -31.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds