Wall clock time and date at job start Tue Mar 31 2020 19:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00015 * 2 1 4 4 C 1.53000 * 109.47027 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47830 * 305.00372 * 4 3 2 6 6 C 1.53005 * 109.47279 * 65.00512 * 4 3 2 7 7 C 1.53007 * 109.47081 * 185.00187 * 4 3 2 8 8 C 1.50706 * 109.46908 * 175.00197 * 7 4 3 9 9 O 1.21271 * 120.00215 * 0.02562 * 8 7 4 10 10 N 1.34773 * 119.99465 * 180.02562 * 8 7 4 11 11 C 1.46501 * 120.00017 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47705 * 179.97438 * 11 10 8 13 13 C 1.35348 * 126.75026 * 94.99599 * 12 11 10 14 14 N 1.35317 * 106.17735 * 179.78015 * 13 12 11 15 15 C 1.46497 * 125.87017 * 180.21003 * 14 13 12 16 16 C 1.53942 * 113.74196 * 13.74138 * 15 14 13 17 17 N 1.47811 * 86.03642 * 222.08692 * 16 15 14 18 18 C 1.36938 * 134.45712 * 204.64673 * 17 16 15 19 19 H 1.08006 * 119.99731 * 179.86683 * 18 17 16 20 20 C 1.38810 * 119.99900 * 359.86196 * 18 17 16 21 21 N 1.31615 * 120.00084 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99728 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47171 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46783 * 120.00280 * 22 20 18 25 25 H 1.48496 * 109.46765 * 240.00006 * 22 20 18 26 26 C 1.47587 * 91.05119 * 24.54774 * 17 16 15 27 27 N 1.28721 * 108.26102 * 0.22816 * 14 13 12 28 28 N 1.28636 * 110.17709 * 0.02562 * 27 14 13 29 29 H 1.09000 * 109.47198 * 59.99785 * 1 2 3 30 30 H 1.08994 * 109.47344 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47214 * 299.99865 * 1 2 3 32 32 H 1.09000 * 109.46891 * 60.00672 * 3 2 1 33 33 H 1.08997 * 109.47526 * 299.99854 * 3 2 1 34 34 H 1.08998 * 109.46618 * 299.99975 * 6 4 3 35 35 H 1.09007 * 109.46695 * 59.99801 * 6 4 3 36 36 H 1.08996 * 109.47416 * 179.97438 * 6 4 3 37 37 H 1.08998 * 109.47160 * 55.00608 * 7 4 3 38 38 H 1.08996 * 109.47236 * 294.99996 * 7 4 3 39 39 H 0.96996 * 120.00676 * 359.97438 * 10 8 7 40 40 H 1.09004 * 109.46926 * 59.99730 * 11 10 8 41 41 H 1.09001 * 109.47077 * 300.00602 * 11 10 8 42 42 H 1.08002 * 126.91502 * 0.05047 * 13 12 11 43 43 H 1.09004 * 112.94415 * 145.33322 * 15 14 13 44 44 H 1.09001 * 113.77001 * 336.34585 * 16 15 14 45 45 H 1.08996 * 113.77272 * 107.74936 * 16 15 14 46 46 H 0.97005 * 119.99940 * 180.02562 * 21 20 18 47 47 H 1.09000 * 113.76860 * 221.15477 * 26 17 16 48 48 H 1.09000 * 113.86642 * 89.77210 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8508 0.5684 0.8426 6 6 3.9963 0.5365 -1.3065 7 6 4.1573 2.5769 0.1264 8 6 5.6538 2.4493 0.2505 9 8 6.1719 1.3529 0.2390 10 7 6.4162 3.5537 0.3743 11 6 7.8709 3.4298 0.4955 12 6 8.4834 4.8011 0.6193 13 6 8.8043 5.4442 1.7662 14 7 9.3274 6.6361 1.3964 15 6 9.8231 7.6744 2.3032 16 6 10.0199 7.1903 3.7512 17 7 9.4198 8.4794 4.1551 18 6 9.4896 9.2597 5.2782 19 1 8.9400 10.1883 5.3255 20 6 10.2665 8.8572 6.3558 21 7 10.9365 7.7258 6.2979 22 14 10.3611 9.9214 7.8882 23 1 9.5227 11.1329 7.7020 24 1 9.8659 9.1510 9.0571 25 1 11.7702 10.3265 8.1232 26 6 8.7177 8.5888 2.8615 27 7 9.3143 6.7009 0.1109 28 7 8.8137 5.6236 -0.3826 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.5532 -0.4554 -1.3961 35 1 3.6809 1.1528 -2.1485 36 1 5.0828 0.4508 -1.3062 37 1 3.7603 3.0735 1.0118 38 1 3.9149 3.1644 -0.7591 39 1 6.0019 4.4307 0.3832 40 1 8.2683 2.9333 -0.3898 41 1 8.1129 2.8420 1.3810 42 1 8.6735 5.0779 2.7737 43 1 10.6795 8.2161 1.9013 44 1 9.4131 6.3229 4.0107 45 1 11.0653 7.0815 4.0399 46 1 11.4791 7.4444 7.0511 47 1 8.7255 9.5945 2.4412 48 1 7.7273 8.1338 2.8574 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107226314.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:30 Heat of formation + Delta-G solvation = 44.017890 kcal Electronic energy + Delta-G solvation = -28198.158218 eV Core-core repulsion = 24098.594516 eV Total energy + Delta-G solvation = -4099.563703 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.34355 -40.87831 -39.93693 -38.96408 -36.46843 -35.48379 -34.94593 -33.65672 -32.50708 -29.76280 -29.52632 -28.16713 -27.37505 -26.79298 -26.16029 -25.92761 -23.41865 -22.46538 -21.92798 -21.13202 -20.88955 -19.05455 -18.60228 -18.00152 -17.55111 -17.19259 -16.98123 -16.92832 -16.57369 -16.46185 -15.98006 -15.90667 -15.72184 -15.03115 -14.88475 -14.72053 -14.39161 -14.13547 -13.93978 -13.72640 -13.57135 -13.39113 -13.13251 -12.99291 -12.90272 -12.79699 -12.62044 -12.42906 -12.40728 -12.06969 -12.04024 -11.81956 -11.77620 -11.72479 -11.62734 -11.06447 -10.93687 -10.83149 -10.55301 -10.25437 -10.06325 -9.10558 -8.01085 -5.36183 0.57598 1.25568 1.29984 1.48014 1.49843 1.58373 1.70949 2.35905 2.42925 2.97644 3.08011 3.13289 3.31725 3.34803 3.73239 3.76197 3.92266 3.94618 4.00661 4.12124 4.16594 4.26027 4.49480 4.51745 4.52373 4.53473 4.58229 4.61553 4.63408 4.69914 4.72822 4.77688 4.89514 4.93224 4.97778 5.01714 5.06366 5.10982 5.14838 5.33744 5.37249 5.39562 5.53414 5.66870 5.77542 6.30350 6.57261 6.80642 7.29048 7.46715 7.49066 8.33871 9.15893 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014245 B = 0.001889 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.083836 B =14820.415834 C =16052.191100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.065 3.935 4 C -0.073 4.073 5 H 0.063 0.937 6 C -0.145 4.145 7 C -0.128 4.128 8 C 0.514 3.486 9 O -0.575 6.575 10 N -0.717 5.717 11 C 0.219 3.781 12 C -0.048 4.048 13 C -0.014 4.014 14 N -0.268 5.268 15 C 0.104 3.896 16 C 0.165 3.835 17 N -0.628 5.628 18 C -0.237 4.237 19 H 0.092 0.908 20 C -0.056 4.056 21 N -0.949 5.949 22 Si 0.979 3.021 23 H -0.264 1.264 24 H -0.293 1.293 25 H -0.292 1.292 26 C 0.126 3.874 27 N -0.109 5.109 28 N -0.281 5.281 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.412 0.588 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.207 0.793 43 H 0.137 0.863 44 H 0.048 0.952 45 H 0.063 0.937 46 H 0.253 0.747 47 H 0.076 0.924 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.404 -9.348 -12.254 23.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.011 4.011 4 C -0.092 4.092 5 H 0.082 0.918 6 C -0.202 4.202 7 C -0.168 4.168 8 C 0.302 3.698 9 O -0.454 6.454 10 N -0.370 5.370 11 C 0.094 3.906 12 C -0.187 4.187 13 C -0.167 4.167 14 N -0.061 5.061 15 C 0.002 3.998 16 C 0.038 3.962 17 N -0.355 5.355 18 C -0.364 4.364 19 H 0.109 0.891 20 C -0.250 4.250 21 N -0.596 5.596 22 Si 0.807 3.193 23 H -0.188 1.188 24 H -0.220 1.220 25 H -0.219 1.219 26 C 0.000 4.000 27 N -0.087 5.087 28 N -0.148 5.148 29 H 0.070 0.930 30 H 0.109 0.891 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.248 0.752 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.224 0.776 43 H 0.155 0.845 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.062 0.938 47 H 0.094 0.906 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.453 -9.269 -13.193 23.036 hybrid contribution -0.037 0.421 2.044 2.087 sum -16.490 -8.848 -11.150 21.784 Atomic orbital electron populations 1.22894 0.79649 1.03578 1.00889 1.87850 1.21261 1.29049 1.95615 1.22642 0.92479 0.84426 1.01543 1.20776 0.93274 0.95628 0.99567 0.91838 1.21820 1.01498 1.00546 0.96323 1.21661 0.89478 0.98786 1.06881 1.21074 0.90531 0.83361 0.74806 1.90687 1.75852 1.27596 1.51287 1.45997 1.06512 1.09995 1.74495 1.19220 0.79685 0.88268 1.03472 1.21938 1.08394 0.99476 0.88936 1.23835 1.02816 0.87162 1.02913 1.47714 1.38314 1.14050 1.06014 1.24691 0.99720 0.87911 0.87466 1.22621 0.99589 0.89333 0.84628 1.45910 1.53674 1.21507 1.14392 1.19380 1.24408 1.01376 0.91274 0.89068 1.25589 0.99535 0.98710 1.01168 1.69919 1.34220 1.23418 1.32081 0.85012 0.77216 0.78157 0.78922 1.18847 1.21983 1.21940 1.23018 0.94066 0.98504 0.84414 1.78286 1.20109 1.18733 0.91600 1.75010 1.13411 0.98703 1.27639 0.93044 0.89072 0.93174 0.91809 0.91657 0.93273 0.92153 0.92836 0.86105 0.86165 0.75227 0.90480 0.88888 0.77639 0.84488 0.93469 0.91865 0.93814 0.90594 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.42 -7.29 10.24 -148.98 -1.53 -8.82 16 3 C 0.07 0.85 5.32 71.98 0.38 1.23 16 4 C -0.07 -1.20 2.28 -10.79 -0.02 -1.22 16 5 H 0.06 1.35 7.95 -2.39 -0.02 1.33 16 6 C -0.14 -2.74 8.83 71.98 0.64 -2.11 16 7 C -0.13 -1.57 5.18 29.85 0.15 -1.42 16 8 C 0.51 10.12 7.55 87.66 0.66 10.78 16 9 O -0.57 -16.00 13.96 -3.00 -0.04 -16.04 16 10 N -0.72 -12.98 5.55 -466.80 -2.59 -15.57 16 11 C 0.22 4.73 6.23 85.63 0.53 5.26 16 12 C -0.05 -1.23 6.61 41.59 0.28 -0.96 16 13 C -0.01 -0.37 10.72 83.49 0.89 0.53 16 14 N -0.27 -8.09 3.54 -332.05 -1.18 -9.26 16 15 C 0.10 3.38 5.14 46.75 0.24 3.62 16 16 C 0.16 6.57 6.90 86.44 0.60 7.16 16 17 N -0.63 -27.93 3.70 -716.72 -2.65 -30.59 16 18 C -0.24 -11.87 10.70 84.03 0.90 -10.98 16 19 H 0.09 4.37 7.83 -2.91 -0.02 4.35 16 20 C -0.06 -2.90 5.50 84.86 0.47 -2.43 16 21 N -0.95 -51.95 11.39 21.65 0.25 -51.70 16 22 Si 0.98 42.06 29.55 68.60 2.03 44.09 16 23 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 24 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 25 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 26 C 0.13 4.30 8.74 86.48 0.76 5.06 16 27 N -0.11 -3.54 13.17 37.02 0.49 -3.05 16 28 N -0.28 -8.68 12.41 -48.60 -0.60 -9.28 16 29 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.05 1.01 7.82 -2.39 -0.02 0.99 16 35 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.05 1.27 5.95 -2.39 -0.01 1.25 16 37 H 0.12 0.92 8.14 -2.39 -0.02 0.91 16 38 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.41 6.01 8.46 -92.71 -0.78 5.22 16 40 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.21 4.68 6.73 -2.91 -0.02 4.66 16 43 H 0.14 4.33 8.14 -2.38 -0.02 4.31 16 44 H 0.05 1.82 6.31 -2.39 -0.02 1.80 16 45 H 0.06 2.90 7.16 -2.39 -0.02 2.88 16 46 H 0.25 13.54 8.31 -92.70 -0.77 12.77 16 47 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 48 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -67.23 397.91 2.08 -65.16 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.19 Total: 19.01 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 7.72 Total: 16.06 kcal Atomic # 7 Polarization: -113.16 SS G_CDS: -6.29 Total: -119.45 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -1.57 Total: -24.86 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -67.23 2.08 -65.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107226314.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.174 kcal (2) G-P(sol) polarization free energy of solvation -67.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds