Wall clock time and date at job start Tue Mar 31 2020 19:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42892 * 114.00279 * 2 1 4 4 C 1.52994 * 109.47365 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47347 * 180.02562 * 4 3 2 6 6 H 1.08994 * 109.47405 * 305.00047 * 5 4 3 7 7 C 1.52996 * 109.47068 * 65.00368 * 5 4 3 8 8 C 1.50702 * 109.47159 * 185.00014 * 5 4 3 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 5 4 10 10 N 1.34777 * 119.99928 * 179.72352 * 8 5 4 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 5 12 12 C 1.50694 * 109.47550 * 180.02562 * 11 10 8 13 13 C 1.35354 * 126.75175 * 94.71299 * 12 11 10 14 14 N 1.35307 * 106.17659 * 179.85685 * 13 12 11 15 15 C 1.46507 * 125.86982 * 180.18678 * 14 13 12 16 16 C 1.53942 * 113.74119 * 14.03501 * 15 14 13 17 17 N 1.47807 * 86.03454 * 222.08684 * 16 15 14 18 18 C 1.36938 * 134.45479 * 204.64557 * 17 16 15 19 19 H 1.08005 * 120.00287 * 179.86350 * 18 17 16 20 20 C 1.38814 * 120.00114 * 359.86760 * 18 17 16 21 21 N 1.31618 * 119.99892 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00258 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46946 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47487 * 119.99540 * 22 20 18 25 25 H 1.48498 * 109.46648 * 239.99817 * 22 20 18 26 26 C 1.47581 * 91.05641 * 24.54790 * 17 16 15 27 27 N 1.28722 * 108.26222 * 0.41521 * 14 13 12 28 28 N 1.28626 * 110.18016 * 359.73980 * 27 14 13 29 29 H 1.09003 * 109.46931 * 59.99752 * 1 2 3 30 30 H 1.09000 * 109.47309 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47035 * 299.99969 * 1 2 3 32 32 H 1.09009 * 109.46855 * 59.99794 * 3 2 1 33 33 H 1.09003 * 109.47252 * 300.00490 * 3 2 1 34 34 H 1.09009 * 109.47154 * 60.00158 * 4 3 2 35 35 H 1.09003 * 109.47483 * 300.00529 * 4 3 2 36 36 H 1.09002 * 109.47575 * 59.99595 * 7 5 4 37 37 H 1.09001 * 109.47551 * 179.97438 * 7 5 4 38 38 H 1.09003 * 109.47307 * 300.00352 * 7 5 4 39 39 H 0.97000 * 120.00317 * 0.28382 * 10 8 5 40 40 H 1.08998 * 109.47134 * 300.00670 * 11 10 8 41 41 H 1.09002 * 109.46857 * 59.99862 * 11 10 8 42 42 H 1.08005 * 126.90952 * 359.97438 * 13 12 11 43 43 H 1.09000 * 112.94227 * 145.62557 * 15 14 13 44 44 H 1.08998 * 113.76862 * 336.34730 * 16 15 14 45 45 H 1.08992 * 113.76986 * 107.74500 * 16 15 14 46 46 H 0.97003 * 120.00338 * 180.02562 * 21 20 18 47 47 H 1.08997 * 113.77148 * 221.15554 * 26 17 16 48 48 H 1.08995 * 113.86588 * 89.76811 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 6 4.1578 2.5822 0.0013 6 1 3.7675 3.1541 -0.8405 7 6 3.8078 3.2957 1.3087 8 6 5.6552 2.4654 -0.1219 9 8 6.1736 1.3719 -0.2028 10 7 6.4179 3.5763 -0.1484 11 6 7.8731 3.4630 -0.2742 12 6 8.4857 4.8398 -0.2784 13 6 8.9862 5.5068 0.7877 14 7 9.4290 6.6948 0.3151 15 6 10.0579 7.7538 1.1086 16 6 10.5031 7.2971 2.5096 17 7 9.9637 8.5869 2.9892 18 6 10.2127 9.3874 4.0720 19 1 9.6674 10.3113 4.1974 20 6 11.1659 9.0116 5.0085 21 7 11.8301 7.8856 4.8559 22 14 11.5050 10.1033 6.4859 23 1 10.6319 11.3029 6.4258 24 1 11.2248 9.3486 7.7338 25 1 12.9284 10.5263 6.4723 26 6 9.0514 8.6669 1.8319 27 7 9.1985 6.7367 -0.9506 28 7 8.6365 5.6456 -1.3356 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8464 -0.8900 34 1 3.8575 0.6434 -0.8892 35 1 3.8568 0.6437 0.8908 36 1 4.1981 2.7238 2.1505 37 1 4.2516 4.2913 1.3094 38 1 2.7248 3.3801 1.3979 39 1 6.0034 4.4509 -0.0839 40 1 8.2672 2.8929 0.5671 41 1 8.1185 2.9528 -1.2056 42 1 9.0261 5.1597 1.8097 43 1 10.8268 8.2967 0.5590 44 1 9.9601 6.4283 2.8817 45 1 11.5835 7.2036 2.6185 46 1 12.4960 7.6228 5.5105 47 1 8.9751 9.6650 1.4007 48 1 8.0805 8.2020 2.0028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107238151.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:56 Heat of formation + Delta-G solvation = 64.463836 kcal Electronic energy + Delta-G solvation = -28322.586594 eV Core-core repulsion = 24223.909495 eV Total energy + Delta-G solvation = -4098.677100 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.10871 -40.10932 -38.41945 -38.26091 -35.45541 -35.04423 -33.44121 -32.02683 -31.33486 -29.59434 -28.00612 -26.92874 -26.68723 -25.34929 -24.89027 -24.40308 -22.11800 -21.92641 -21.09420 -20.04571 -19.65706 -17.84126 -17.30574 -16.78153 -16.71826 -16.41337 -16.24573 -15.64397 -15.55534 -15.20111 -15.14575 -14.76553 -14.36311 -14.10166 -13.93897 -13.50195 -13.34578 -13.20926 -12.95549 -12.70813 -12.28311 -12.16005 -12.13940 -12.01193 -11.88164 -11.61579 -11.41475 -11.24809 -11.21488 -11.20038 -11.01592 -10.97812 -10.56050 -10.24064 -10.06908 -9.96919 -9.91805 -9.59378 -9.19877 -9.14157 -9.08064 -7.29708 -6.08409 -3.43910 1.77792 2.38668 2.50674 2.60478 3.14540 3.23390 3.29339 3.31707 3.54618 4.18555 4.31970 4.37833 4.53469 4.61417 4.67882 4.70331 4.82173 4.85957 4.89755 4.98626 5.03396 5.07229 5.09856 5.12328 5.17026 5.28650 5.37007 5.42223 5.44060 5.50754 5.59332 5.66995 5.72555 5.89386 5.97456 6.01079 6.06786 6.12381 6.24374 6.26753 6.49840 6.76037 6.79708 6.99016 7.12871 7.34948 7.64101 8.07126 8.69947 8.71949 9.38183 10.15312 11.08868 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014518 B = 0.001952 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.189301 B =14341.265721 C =15501.365950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.060 3.940 4 C -0.100 4.100 5 C -0.107 4.107 6 H 0.100 0.900 7 C -0.149 4.149 8 C 0.520 3.480 9 O -0.538 6.538 10 N -0.722 5.722 11 C 0.215 3.785 12 C -0.063 4.063 13 C -0.015 4.015 14 N -0.265 5.265 15 C 0.077 3.923 16 C 0.163 3.837 17 N -0.598 5.598 18 C -0.233 4.233 19 H 0.088 0.912 20 C -0.001 4.001 21 N -0.919 5.919 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.287 1.287 26 C 0.120 3.880 27 N -0.089 5.089 28 N -0.267 5.267 29 H 0.040 0.960 30 H 0.085 0.915 31 H 0.041 0.959 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.403 0.597 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.191 0.809 43 H 0.132 0.868 44 H 0.042 0.958 45 H 0.092 0.908 46 H 0.259 0.741 47 H 0.062 0.938 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.342 -9.760 -8.439 21.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.017 4.017 4 C -0.138 4.138 5 C -0.129 4.129 6 H 0.118 0.882 7 C -0.207 4.207 8 C 0.306 3.694 9 O -0.415 6.415 10 N -0.374 5.374 11 C 0.090 3.910 12 C -0.202 4.202 13 C -0.169 4.169 14 N -0.057 5.057 15 C -0.025 4.025 16 C 0.037 3.963 17 N -0.325 5.325 18 C -0.359 4.359 19 H 0.106 0.894 20 C -0.198 4.198 21 N -0.564 5.564 22 Si 0.749 3.251 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.214 1.214 26 C -0.007 4.007 27 N -0.068 5.068 28 N -0.134 5.134 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.237 0.763 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.208 0.792 43 H 0.150 0.850 44 H 0.059 0.941 45 H 0.110 0.890 46 H 0.069 0.931 47 H 0.080 0.920 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -16.511 -9.722 -9.470 21.373 hybrid contribution -0.203 0.764 1.958 2.112 sum -16.714 -8.958 -7.512 20.397 Atomic orbital electron populations 1.22745 0.81019 1.02803 0.99950 1.87887 1.19670 1.28059 1.95410 1.22625 0.94113 0.84685 1.00274 1.21276 0.92162 0.95306 1.05046 1.21203 0.92187 0.98577 1.00903 0.88238 1.21881 1.02452 1.00499 0.95863 1.20478 0.89061 0.84033 0.75846 1.90722 1.74866 1.26640 1.49279 1.46056 1.07192 1.09324 1.74861 1.19282 0.78712 0.89583 1.03460 1.21730 1.08889 0.99271 0.90303 1.23508 1.03534 0.87725 1.02083 1.47919 1.37239 1.13647 1.06914 1.25297 0.97841 0.87727 0.91634 1.22746 1.01443 0.89658 0.82482 1.45673 1.41280 1.20835 1.24704 1.19050 1.18203 1.00831 0.97866 0.89429 1.24855 0.98460 0.97490 0.99028 1.69768 1.27232 1.22523 1.36916 0.85946 0.77984 0.79357 0.81844 1.20204 1.21426 1.21353 1.22925 0.93178 0.97326 0.87281 1.78274 1.16510 1.17605 0.94398 1.75020 1.14238 0.98353 1.25785 0.94094 0.89611 0.94062 0.92939 0.93292 0.90087 0.90216 0.91570 0.91738 0.91304 0.76305 0.89620 0.89749 0.79229 0.85027 0.94088 0.89013 0.93117 0.91975 0.93994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.70 10.70 -35.23 -0.38 -4.08 16 3 C 0.06 0.45 5.69 37.15 0.21 0.66 16 4 C -0.10 -0.89 4.40 -26.74 -0.12 -1.01 16 5 C -0.11 -0.84 2.72 -91.77 -0.25 -1.09 16 6 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 7 C -0.15 -0.97 8.85 37.16 0.33 -0.64 16 8 C 0.52 5.73 7.15 -10.98 -0.08 5.66 16 9 O -0.54 -7.96 15.92 5.55 0.09 -7.87 16 10 N -0.72 -7.43 5.44 -61.47 -0.33 -7.76 16 11 C 0.21 2.50 6.23 -5.20 -0.03 2.47 16 12 C -0.06 -0.86 6.62 -82.78 -0.55 -1.41 16 13 C -0.01 -0.21 10.72 -17.05 -0.18 -0.39 16 14 N -0.26 -4.20 3.54 -56.31 -0.20 -4.40 16 15 C 0.08 1.30 5.14 -70.16 -0.36 0.94 16 16 C 0.16 3.28 6.90 -2.84 -0.02 3.26 16 17 N -0.60 -13.54 3.70 -177.93 -0.66 -14.20 16 18 C -0.23 -5.90 10.70 -15.06 -0.16 -6.07 16 19 H 0.09 2.15 7.83 -52.48 -0.41 1.74 16 20 C 0.00 -0.02 5.50 -17.43 -0.10 -0.11 16 21 N -0.92 -24.82 11.39 55.49 0.63 -24.19 16 22 Si 0.92 20.47 29.55 -169.99 -5.02 15.45 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 26 C 0.12 2.16 8.74 -2.97 -0.03 2.14 16 27 N -0.09 -1.51 13.16 60.35 0.79 -0.72 16 28 N -0.27 -4.34 12.41 33.29 0.41 -3.93 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.05 0.33 6.56 -51.92 -0.34 -0.01 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 0.84 7.96 -51.92 -0.41 0.43 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.39 7.57 -51.93 -0.39 0.00 16 38 H 0.07 0.35 6.56 -51.93 -0.34 0.01 16 39 H 0.40 3.59 7.89 -40.82 -0.32 3.27 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.19 2.36 6.74 -52.48 -0.35 2.00 16 43 H 0.13 2.16 8.14 -51.93 -0.42 1.73 16 44 H 0.04 0.80 6.31 -51.93 -0.33 0.48 16 45 H 0.09 2.06 7.17 -51.93 -0.37 1.69 16 46 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 48 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 398.12 15.07 6.00 6.00 Total: -1.00 -31.35 398.12 -6.37 -37.71 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -7.48 Total: 2.27 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -0.22 Total: 5.71 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.65 Total: -55.19 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -0.29 Total: -11.95 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.35 -6.37 -37.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107238151.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.178 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds