Wall clock time and date at job start Tue Mar 31 2020 19:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42892 * 114.00279 * 2 1 4 4 C 1.52994 * 109.47365 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47347 * 180.02562 * 4 3 2 6 6 H 1.08994 * 109.47405 * 305.00047 * 5 4 3 7 7 C 1.52996 * 109.47068 * 65.00368 * 5 4 3 8 8 C 1.50702 * 109.47159 * 185.00014 * 5 4 3 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 5 4 10 10 N 1.34777 * 119.99928 * 179.72352 * 8 5 4 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 5 12 12 C 1.50694 * 109.47550 * 180.02562 * 11 10 8 13 13 C 1.35354 * 126.75175 * 94.71299 * 12 11 10 14 14 N 1.35307 * 106.17659 * 179.85685 * 13 12 11 15 15 C 1.46507 * 125.86982 * 180.18678 * 14 13 12 16 16 C 1.53942 * 113.74119 * 14.03501 * 15 14 13 17 17 N 1.47807 * 86.03454 * 222.08684 * 16 15 14 18 18 C 1.36938 * 134.45479 * 204.64557 * 17 16 15 19 19 H 1.08005 * 120.00287 * 179.86350 * 18 17 16 20 20 C 1.38814 * 120.00114 * 359.86760 * 18 17 16 21 21 N 1.31618 * 119.99892 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00258 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46946 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47487 * 119.99540 * 22 20 18 25 25 H 1.48498 * 109.46648 * 239.99817 * 22 20 18 26 26 C 1.47581 * 91.05641 * 24.54790 * 17 16 15 27 27 N 1.28722 * 108.26222 * 0.41521 * 14 13 12 28 28 N 1.28626 * 110.18016 * 359.73980 * 27 14 13 29 29 H 1.09003 * 109.46931 * 59.99752 * 1 2 3 30 30 H 1.09000 * 109.47309 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47035 * 299.99969 * 1 2 3 32 32 H 1.09009 * 109.46855 * 59.99794 * 3 2 1 33 33 H 1.09003 * 109.47252 * 300.00490 * 3 2 1 34 34 H 1.09009 * 109.47154 * 60.00158 * 4 3 2 35 35 H 1.09003 * 109.47483 * 300.00529 * 4 3 2 36 36 H 1.09002 * 109.47575 * 59.99595 * 7 5 4 37 37 H 1.09001 * 109.47551 * 179.97438 * 7 5 4 38 38 H 1.09003 * 109.47307 * 300.00352 * 7 5 4 39 39 H 0.97000 * 120.00317 * 0.28382 * 10 8 5 40 40 H 1.08998 * 109.47134 * 300.00670 * 11 10 8 41 41 H 1.09002 * 109.46857 * 59.99862 * 11 10 8 42 42 H 1.08005 * 126.90952 * 359.97438 * 13 12 11 43 43 H 1.09000 * 112.94227 * 145.62557 * 15 14 13 44 44 H 1.08998 * 113.76862 * 336.34730 * 16 15 14 45 45 H 1.08992 * 113.76986 * 107.74500 * 16 15 14 46 46 H 0.97003 * 120.00338 * 180.02562 * 21 20 18 47 47 H 1.08997 * 113.77148 * 221.15554 * 26 17 16 48 48 H 1.08995 * 113.86588 * 89.76811 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 6 4.1578 2.5822 0.0013 6 1 3.7675 3.1541 -0.8405 7 6 3.8078 3.2957 1.3087 8 6 5.6552 2.4654 -0.1219 9 8 6.1736 1.3719 -0.2028 10 7 6.4179 3.5763 -0.1484 11 6 7.8731 3.4630 -0.2742 12 6 8.4857 4.8398 -0.2784 13 6 8.9862 5.5068 0.7877 14 7 9.4290 6.6948 0.3151 15 6 10.0579 7.7538 1.1086 16 6 10.5031 7.2971 2.5096 17 7 9.9637 8.5869 2.9892 18 6 10.2127 9.3874 4.0720 19 1 9.6674 10.3113 4.1974 20 6 11.1659 9.0116 5.0085 21 7 11.8301 7.8856 4.8559 22 14 11.5050 10.1033 6.4859 23 1 10.6319 11.3029 6.4258 24 1 11.2248 9.3486 7.7338 25 1 12.9284 10.5263 6.4723 26 6 9.0514 8.6669 1.8319 27 7 9.1985 6.7367 -0.9506 28 7 8.6365 5.6456 -1.3356 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8464 -0.8900 34 1 3.8575 0.6434 -0.8892 35 1 3.8568 0.6437 0.8908 36 1 4.1981 2.7238 2.1505 37 1 4.2516 4.2913 1.3094 38 1 2.7248 3.3801 1.3979 39 1 6.0034 4.4509 -0.0839 40 1 8.2672 2.8929 0.5671 41 1 8.1185 2.9528 -1.2056 42 1 9.0261 5.1597 1.8097 43 1 10.8268 8.2967 0.5590 44 1 9.9601 6.4283 2.8817 45 1 11.5835 7.2036 2.6185 46 1 12.4960 7.6228 5.5105 47 1 8.9751 9.6650 1.4007 48 1 8.0805 8.2020 2.0028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107238151.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:55 Heat of formation + Delta-G solvation = 42.484290 kcal Electronic energy + Delta-G solvation = -28323.539699 eV Core-core repulsion = 24223.909495 eV Total energy + Delta-G solvation = -4099.630204 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.35126 -40.98815 -39.93775 -38.88911 -36.39203 -35.83359 -34.95325 -33.64998 -32.46416 -30.23994 -29.69860 -27.92322 -27.19788 -26.83367 -26.03258 -25.52800 -23.42616 -22.88338 -22.22647 -21.13237 -20.84392 -19.05495 -18.62770 -18.02157 -17.60164 -17.24250 -17.00986 -16.97033 -16.62463 -16.41640 -16.01851 -15.83828 -15.68392 -15.05785 -14.90596 -14.75676 -14.39536 -14.21362 -13.92372 -13.72388 -13.57081 -13.39395 -13.38846 -12.96525 -12.80430 -12.72463 -12.62982 -12.55953 -12.42882 -12.18168 -12.06461 -11.88127 -11.83468 -11.78504 -11.72332 -11.07681 -10.95723 -10.85265 -10.55353 -10.26180 -10.12691 -9.10400 -8.00961 -5.36026 0.57032 1.23930 1.29603 1.48048 1.49920 1.58411 1.63992 2.31285 2.42918 2.92534 3.08004 3.12587 3.31716 3.34082 3.65099 3.74200 3.90385 3.93155 3.99563 4.03707 4.16223 4.27511 4.34263 4.43164 4.49812 4.50413 4.57453 4.58545 4.59803 4.62849 4.70794 4.87206 4.90278 4.92460 4.93605 5.01235 5.04567 5.05769 5.10726 5.25448 5.34863 5.37148 5.37407 5.66521 5.77651 6.27965 6.51436 6.80755 7.21591 7.46189 7.49208 8.33992 9.16013 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014518 B = 0.001952 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.189301 B =14341.265721 C =15501.365950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.424 6.424 3 C 0.061 3.939 4 C -0.097 4.097 5 C -0.098 4.098 6 H 0.124 0.876 7 C -0.147 4.147 8 C 0.518 3.482 9 O -0.581 6.581 10 N -0.713 5.713 11 C 0.218 3.782 12 C -0.049 4.049 13 C -0.013 4.013 14 N -0.268 5.268 15 C 0.104 3.896 16 C 0.165 3.835 17 N -0.627 5.627 18 C -0.237 4.237 19 H 0.092 0.908 20 C -0.056 4.056 21 N -0.949 5.949 22 Si 0.978 3.022 23 H -0.264 1.264 24 H -0.293 1.293 25 H -0.292 1.292 26 C 0.126 3.874 27 N -0.108 5.108 28 N -0.281 5.281 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.412 0.588 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.207 0.793 43 H 0.138 0.862 44 H 0.048 0.952 45 H 0.063 0.937 46 H 0.253 0.747 47 H 0.076 0.924 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.338 -8.869 -8.622 22.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.343 6.343 3 C -0.015 4.015 4 C -0.135 4.135 5 C -0.119 4.119 6 H 0.142 0.858 7 C -0.204 4.204 8 C 0.306 3.694 9 O -0.460 6.460 10 N -0.366 5.366 11 C 0.093 3.907 12 C -0.188 4.188 13 C -0.166 4.166 14 N -0.061 5.061 15 C 0.002 3.998 16 C 0.038 3.962 17 N -0.355 5.355 18 C -0.364 4.364 19 H 0.109 0.891 20 C -0.250 4.250 21 N -0.596 5.596 22 Si 0.807 3.193 23 H -0.188 1.188 24 H -0.220 1.220 25 H -0.219 1.219 26 C 0.000 4.000 27 N -0.087 5.087 28 N -0.147 5.147 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.248 0.752 40 H 0.112 0.888 41 H 0.096 0.904 42 H 0.224 0.776 43 H 0.155 0.845 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.062 0.938 47 H 0.094 0.906 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.551 -8.797 -9.691 22.703 hybrid contribution 0.353 0.412 1.930 2.005 sum -18.198 -8.385 -7.760 21.487 Atomic orbital electron populations 1.22919 0.79421 1.03691 1.01019 1.87843 1.21561 1.29274 1.95660 1.22665 0.92718 0.84384 1.01764 1.21206 0.93636 0.95568 1.03074 1.21195 0.89524 0.98404 1.02760 0.85783 1.21892 1.03800 1.00374 0.94345 1.21069 0.90390 0.83312 0.74662 1.90708 1.75853 1.28218 1.51264 1.45963 1.06557 1.09759 1.74304 1.19241 0.79589 0.88348 1.03557 1.21907 1.08004 0.99421 0.89455 1.23827 1.02801 0.87073 1.02929 1.47716 1.37618 1.13933 1.06794 1.24700 0.97405 0.87267 0.90422 1.22618 0.99792 0.89296 0.84466 1.45903 1.42875 1.21504 1.25171 1.19380 1.17478 1.01188 0.98393 0.89063 1.25585 0.98940 0.98833 1.01613 1.69918 1.28042 1.24092 1.37584 0.85016 0.77438 0.78193 0.78684 1.18840 1.21999 1.21944 1.23018 0.93105 0.98429 0.85445 1.78283 1.17530 1.18217 0.94626 1.75009 1.14500 0.98620 1.26602 0.92990 0.88986 0.92950 0.91320 0.91732 0.92198 0.92138 0.92712 0.90870 0.89327 0.75203 0.88834 0.90382 0.77621 0.84480 0.93471 0.91876 0.93820 0.90592 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.42 -7.64 10.70 -148.98 -1.59 -9.23 16 3 C 0.06 0.81 5.69 71.98 0.41 1.22 16 4 C -0.10 -1.67 4.40 30.59 0.13 -1.54 16 5 C -0.10 -1.36 2.72 -11.54 -0.03 -1.39 16 6 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 7 C -0.15 -1.55 8.85 71.98 0.64 -0.91 16 8 C 0.52 10.92 7.15 87.66 0.63 11.55 16 9 O -0.58 -17.26 15.92 -3.04 -0.05 -17.31 16 10 N -0.71 -13.51 5.44 -466.79 -2.54 -16.05 16 11 C 0.22 4.80 6.23 85.63 0.53 5.34 16 12 C -0.05 -1.25 6.62 41.59 0.28 -0.97 16 13 C -0.01 -0.34 10.72 83.49 0.89 0.55 16 14 N -0.27 -8.06 3.54 -332.06 -1.18 -9.24 16 15 C 0.10 3.37 5.14 46.75 0.24 3.61 16 16 C 0.16 6.56 6.90 86.44 0.60 7.15 16 17 N -0.63 -27.85 3.70 -716.84 -2.65 -30.50 16 18 C -0.24 -11.85 10.70 84.03 0.90 -10.96 16 19 H 0.09 4.37 7.83 -2.91 -0.02 4.34 16 20 C -0.06 -2.88 5.50 84.86 0.47 -2.41 16 21 N -0.95 -51.90 11.39 21.65 0.25 -51.65 16 22 Si 0.98 42.02 29.55 68.60 2.03 44.05 16 23 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 24 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 25 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 26 C 0.13 4.29 8.74 86.49 0.76 5.05 16 27 N -0.11 -3.51 13.16 37.02 0.49 -3.02 16 28 N -0.28 -8.69 12.41 -48.60 -0.60 -9.29 16 29 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.07 0.68 6.56 -2.38 -0.02 0.67 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.06 1.27 7.96 -2.38 -0.02 1.25 16 35 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 0.66 7.57 -2.39 -0.02 0.65 16 38 H 0.09 0.61 6.56 -2.39 -0.02 0.60 16 39 H 0.41 6.36 7.89 -92.71 -0.73 5.63 16 40 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.21 4.69 6.74 -2.91 -0.02 4.67 16 43 H 0.14 4.32 8.14 -2.39 -0.02 4.30 16 44 H 0.05 1.81 6.31 -2.39 -0.02 1.80 16 45 H 0.06 2.89 7.17 -2.39 -0.02 2.87 16 46 H 0.25 13.53 8.31 -92.71 -0.77 12.76 16 47 H 0.08 2.39 8.14 -2.39 -0.02 2.38 16 48 H 0.06 1.76 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -67.68 398.12 2.07 -65.60 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 0.24 Total: 18.82 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: 7.69 Total: 17.81 kcal Atomic # 7 Polarization: -113.50 SS G_CDS: -6.24 Total: -119.75 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -1.64 Total: -26.54 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -67.68 2.07 -65.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107238151.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.087 kcal (2) G-P(sol) polarization free energy of solvation -67.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds