Wall clock time and date at job start Tue Mar 31 2020 19:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 114.00041 * 2 1 4 4 C 1.52998 * 109.47352 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47369 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47096 * 55.00248 * 5 4 3 7 7 C 1.53004 * 109.46903 * 294.99813 * 5 4 3 8 8 C 1.50695 * 109.47015 * 175.00109 * 5 4 3 9 9 O 1.21283 * 120.00466 * 359.97438 * 8 5 4 10 10 N 1.34781 * 119.99967 * 180.02562 * 8 5 4 11 11 C 1.46494 * 120.00146 * 179.97438 * 10 8 5 12 12 C 1.50698 * 109.47232 * 179.97438 * 11 10 8 13 13 C 1.35355 * 126.75408 * 95.00065 * 12 11 10 14 14 N 1.35319 * 106.17483 * 179.77943 * 13 12 11 15 15 C 1.46499 * 125.86342 * 180.20844 * 14 13 12 16 16 C 1.53940 * 113.74352 * 13.73587 * 15 14 13 17 17 N 1.47820 * 86.03811 * 222.08660 * 16 15 14 18 18 C 1.36933 * 134.45788 * 204.64834 * 17 16 15 19 19 H 1.07990 * 120.00101 * 173.34818 * 18 17 16 20 20 C 1.38814 * 119.99782 * 353.33990 * 18 17 16 21 21 N 1.31620 * 120.00404 * 5.07220 * 20 18 17 22 22 Si 1.86803 * 119.99808 * 185.06226 * 20 18 17 23 23 H 1.48505 * 109.46700 * 94.99367 * 22 20 18 24 24 H 1.48494 * 109.47188 * 214.99278 * 22 20 18 25 25 H 1.48496 * 109.47153 * 334.99600 * 22 20 18 26 26 C 1.47586 * 91.04694 * 24.54991 * 17 16 15 27 27 N 1.28715 * 108.26330 * 0.22296 * 14 13 12 28 28 N 1.28635 * 110.17965 * 0.02562 * 27 14 13 29 29 H 1.08999 * 109.46943 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47198 * 299.99633 * 1 2 3 31 31 H 1.08996 * 109.47463 * 59.99856 * 1 2 3 32 32 H 1.08999 * 109.47309 * 60.00111 * 3 2 1 33 33 H 1.09002 * 109.47394 * 300.00063 * 3 2 1 34 34 H 1.09003 * 109.47422 * 59.99539 * 4 3 2 35 35 H 1.09006 * 109.47386 * 299.99899 * 4 3 2 36 36 H 1.08999 * 109.47074 * 60.00087 * 7 5 4 37 37 H 1.09001 * 109.46696 * 179.97438 * 7 5 4 38 38 H 1.08997 * 109.46883 * 299.99931 * 7 5 4 39 39 H 0.97003 * 119.99576 * 359.97438 * 10 8 5 40 40 H 1.09003 * 109.47157 * 60.00018 * 11 10 8 41 41 H 1.08999 * 109.47710 * 299.99798 * 11 10 8 42 42 H 1.07999 * 126.90548 * 0.03943 * 13 12 11 43 43 H 1.08998 * 112.94160 * 145.33127 * 15 14 13 44 44 H 1.09003 * 113.77443 * 336.35083 * 16 15 14 45 45 H 1.09001 * 113.77035 * 107.74778 * 16 15 14 46 46 H 0.96995 * 120.00273 * 179.97438 * 21 20 18 47 47 H 1.08997 * 113.76663 * 221.15571 * 26 17 16 48 48 H 1.08995 * 113.86848 * 89.77011 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5824 0.0000 6 1 3.7674 3.1535 0.8423 7 6 3.8078 3.2971 -1.3068 8 6 5.6551 2.4655 0.1232 9 8 6.1735 1.3720 0.2031 10 7 6.4182 3.5763 0.1456 11 6 7.8737 3.4627 0.2659 12 6 8.4867 4.8393 0.2664 13 6 8.8162 5.5788 1.3511 14 7 9.3361 6.7343 0.8759 15 6 9.8383 7.8467 1.6861 16 6 10.0463 7.4891 3.1689 17 7 9.4489 8.8084 3.4649 18 6 9.5270 9.6825 4.5160 19 1 9.0644 10.6557 4.4444 20 6 10.2007 9.3176 5.6735 21 7 10.8488 8.1732 5.7249 22 14 10.1876 10.4509 7.1584 23 1 9.1015 10.0408 8.0845 24 1 11.4941 10.3644 7.8587 25 1 9.9564 11.8484 6.7125 26 6 8.7369 8.8062 2.1721 27 7 9.3131 6.6881 -0.4102 28 7 8.8091 5.5724 -0.8052 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8567 0.6438 -0.8908 35 1 3.8575 0.6436 0.8892 36 1 2.7247 3.3816 -1.3960 37 1 4.2507 4.2930 -1.3061 38 1 4.1982 2.7259 -2.1491 39 1 6.0035 4.4509 0.0820 40 1 8.2645 2.8917 -0.5764 41 1 8.1228 2.9534 1.1968 42 1 8.6932 5.3006 2.3874 43 1 10.6913 8.3514 1.2326 44 1 9.4418 6.6473 3.5069 45 1 11.0940 7.4051 3.4579 46 1 11.3198 7.9184 6.5336 47 1 8.7411 9.7719 1.6666 48 1 7.7467 8.3528 2.2148 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107238152.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:59 Heat of formation + Delta-G solvation = 64.233480 kcal Electronic energy + Delta-G solvation = -28290.369598 eV Core-core repulsion = 24191.682509 eV Total energy + Delta-G solvation = -4098.687089 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.10633 -40.10747 -38.41614 -38.25762 -35.45322 -35.04318 -33.43971 -32.03257 -31.33439 -29.59215 -28.00482 -26.92866 -26.68701 -25.35185 -24.88802 -24.40272 -22.11101 -21.93140 -21.08999 -20.04617 -19.65687 -17.83827 -17.29418 -16.78370 -16.72909 -16.41698 -16.24991 -15.60620 -15.57456 -15.20634 -15.12182 -14.76503 -14.33623 -14.10436 -14.01129 -13.42074 -13.35218 -13.23245 -12.97512 -12.71486 -12.28162 -12.17424 -12.12690 -11.99971 -11.88579 -11.62202 -11.41725 -11.24500 -11.21147 -11.19737 -11.01189 -10.97833 -10.56589 -10.25446 -10.06986 -9.97552 -9.92455 -9.58725 -9.19926 -9.12589 -9.07590 -7.28691 -6.09817 -3.44494 1.77950 2.38844 2.50850 2.60437 3.14816 3.23482 3.29421 3.31297 3.54892 4.18933 4.31962 4.37910 4.53800 4.61290 4.67658 4.69912 4.83216 4.85124 4.89198 4.98895 5.03931 5.08390 5.10446 5.11860 5.17213 5.28992 5.35576 5.41959 5.44090 5.50576 5.59582 5.66202 5.72863 5.88888 5.97660 6.01461 6.07983 6.12567 6.24600 6.26881 6.50454 6.73612 6.80028 6.98823 7.13260 7.35153 7.63617 8.07339 8.69943 8.71590 9.37710 10.15819 11.07899 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013505 B = 0.001964 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.784831 B =14255.259587 C =15469.631446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.059 3.941 4 C -0.100 4.100 5 C -0.108 4.108 6 H 0.100 0.900 7 C -0.149 4.149 8 C 0.520 3.480 9 O -0.538 6.538 10 N -0.722 5.722 11 C 0.215 3.785 12 C -0.063 4.063 13 C -0.015 4.015 14 N -0.265 5.265 15 C 0.076 3.924 16 C 0.166 3.834 17 N -0.598 5.598 18 C -0.234 4.234 19 H 0.088 0.912 20 C 0.001 3.999 21 N -0.917 5.917 22 Si 0.918 3.082 23 H -0.286 1.286 24 H -0.288 1.288 25 H -0.278 1.278 26 C 0.120 3.880 27 N -0.089 5.089 28 N -0.267 5.267 29 H 0.085 0.915 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.403 0.597 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.191 0.809 43 H 0.132 0.868 44 H 0.043 0.957 45 H 0.088 0.912 46 H 0.259 0.741 47 H 0.062 0.938 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.500 -10.311 -10.964 21.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.017 4.017 4 C -0.138 4.138 5 C -0.129 4.129 6 H 0.118 0.882 7 C -0.206 4.206 8 C 0.306 3.694 9 O -0.415 6.415 10 N -0.374 5.374 11 C 0.090 3.910 12 C -0.202 4.202 13 C -0.168 4.168 14 N -0.057 5.057 15 C -0.026 4.026 16 C 0.039 3.961 17 N -0.325 5.325 18 C -0.361 4.361 19 H 0.105 0.895 20 C -0.197 4.197 21 N -0.562 5.562 22 Si 0.747 3.253 23 H -0.213 1.213 24 H -0.214 1.214 25 H -0.203 1.203 26 C -0.008 4.008 27 N -0.068 5.068 28 N -0.134 5.134 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.237 0.763 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.208 0.792 43 H 0.149 0.851 44 H 0.061 0.939 45 H 0.106 0.894 46 H 0.069 0.931 47 H 0.080 0.920 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -14.513 -10.348 -11.874 21.417 hybrid contribution -0.591 0.872 1.999 2.260 sum -15.105 -9.476 -9.875 20.382 Atomic orbital electron populations 1.22742 0.81018 1.02801 0.99955 1.87887 1.19672 1.28057 1.95411 1.22625 0.94109 0.84686 1.00282 1.21276 0.92165 0.95298 1.05040 1.21208 0.92201 0.98590 1.00918 0.88174 1.21873 1.02380 1.00486 0.95871 1.20477 0.89066 0.84033 0.75843 1.90722 1.74883 1.26627 1.49277 1.46057 1.07117 1.09337 1.74921 1.19284 0.78672 0.89663 1.03415 1.21732 1.09419 0.99345 0.89695 1.23516 1.03522 0.87791 1.02020 1.47915 1.37844 1.14186 1.05769 1.25315 0.99895 0.85621 0.91738 1.22694 1.01015 0.89369 0.82982 1.45653 1.51278 1.18247 1.17297 1.19002 1.31570 0.94899 0.90656 0.89450 1.24886 0.99552 0.97346 0.97943 1.69776 1.35863 1.22288 1.28267 0.86021 0.77325 0.79649 0.82295 1.21275 1.21402 1.20270 1.22929 0.93652 0.96642 0.87527 1.78273 1.18956 1.16085 0.93491 1.75021 1.13112 0.99091 1.26163 0.89614 0.94058 0.94093 0.93238 0.92980 0.90266 0.90047 0.91334 0.91740 0.91651 0.76301 0.89760 0.89608 0.79215 0.85054 0.93900 0.89417 0.93053 0.92015 0.93999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.72 10.70 -35.23 -0.38 -4.10 16 3 C 0.06 0.45 5.69 37.16 0.21 0.66 16 4 C -0.10 -0.89 4.40 -26.73 -0.12 -1.01 16 5 C -0.11 -0.85 2.73 -91.77 -0.25 -1.10 16 6 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 7 C -0.15 -0.95 8.84 37.16 0.33 -0.62 16 8 C 0.52 5.75 7.15 -10.99 -0.08 5.67 16 9 O -0.54 -7.97 15.92 5.55 0.09 -7.88 16 10 N -0.72 -7.45 5.44 -61.48 -0.33 -7.79 16 11 C 0.21 2.51 6.23 -5.20 -0.03 2.48 16 12 C -0.06 -0.86 6.62 -82.77 -0.55 -1.41 16 13 C -0.01 -0.21 10.72 -17.04 -0.18 -0.39 16 14 N -0.26 -4.20 3.54 -56.29 -0.20 -4.40 16 15 C 0.08 1.28 5.14 -70.14 -0.36 0.92 16 16 C 0.17 3.34 6.81 -2.84 -0.02 3.32 16 17 N -0.60 -13.55 3.70 -177.86 -0.66 -14.21 16 18 C -0.23 -5.95 10.70 -15.06 -0.16 -6.12 16 19 H 0.09 2.14 7.83 -52.49 -0.41 1.73 16 20 C 0.00 0.02 5.50 -17.43 -0.10 -0.08 16 21 N -0.92 -24.77 11.51 55.49 0.64 -24.13 16 22 Si 0.92 20.46 29.56 -169.99 -5.02 15.43 16 23 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 26 C 0.12 2.16 8.74 -2.96 -0.03 2.13 16 27 N -0.09 -1.51 13.17 60.35 0.79 -0.72 16 28 N -0.27 -4.33 12.41 33.29 0.41 -3.91 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.32 6.57 -51.93 -0.34 -0.02 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.85 7.95 -51.93 -0.41 0.44 16 36 H 0.07 0.34 6.57 -51.93 -0.34 0.00 16 37 H 0.06 0.39 7.57 -51.93 -0.39 0.00 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.40 3.61 7.88 -40.82 -0.32 3.29 16 40 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.19 2.38 6.73 -52.49 -0.35 2.02 16 43 H 0.13 2.13 8.14 -51.93 -0.42 1.71 16 44 H 0.04 0.85 6.31 -51.93 -0.33 0.52 16 45 H 0.09 1.96 7.37 -51.93 -0.38 1.58 16 46 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 398.33 15.07 6.00 6.00 Total: -1.00 -31.34 398.33 -6.37 -37.70 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -7.49 Total: 2.23 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -0.22 Total: 5.76 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: 0.65 Total: -55.16 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -0.29 Total: -11.98 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.34 -6.37 -37.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107238152.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.938 kcal (2) G-P(sol) polarization free energy of solvation -31.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds