Wall clock time and date at job start Tue Mar 31 2020 19:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 114.00041 * 2 1 4 4 C 1.52998 * 109.47352 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47369 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47096 * 55.00248 * 5 4 3 7 7 C 1.53004 * 109.46903 * 294.99813 * 5 4 3 8 8 C 1.50695 * 109.47015 * 175.00109 * 5 4 3 9 9 O 1.21283 * 120.00466 * 359.97438 * 8 5 4 10 10 N 1.34781 * 119.99967 * 180.02562 * 8 5 4 11 11 C 1.46494 * 120.00146 * 179.97438 * 10 8 5 12 12 C 1.50698 * 109.47232 * 179.97438 * 11 10 8 13 13 C 1.35355 * 126.75408 * 95.00065 * 12 11 10 14 14 N 1.35319 * 106.17483 * 179.77943 * 13 12 11 15 15 C 1.46499 * 125.86342 * 180.20844 * 14 13 12 16 16 C 1.53940 * 113.74352 * 13.73587 * 15 14 13 17 17 N 1.47820 * 86.03811 * 222.08660 * 16 15 14 18 18 C 1.36933 * 134.45788 * 204.64834 * 17 16 15 19 19 H 1.07990 * 120.00101 * 173.34818 * 18 17 16 20 20 C 1.38814 * 119.99782 * 353.33990 * 18 17 16 21 21 N 1.31620 * 120.00404 * 5.07220 * 20 18 17 22 22 Si 1.86803 * 119.99808 * 185.06226 * 20 18 17 23 23 H 1.48505 * 109.46700 * 94.99367 * 22 20 18 24 24 H 1.48494 * 109.47188 * 214.99278 * 22 20 18 25 25 H 1.48496 * 109.47153 * 334.99600 * 22 20 18 26 26 C 1.47586 * 91.04694 * 24.54991 * 17 16 15 27 27 N 1.28715 * 108.26330 * 0.22296 * 14 13 12 28 28 N 1.28635 * 110.17965 * 0.02562 * 27 14 13 29 29 H 1.08999 * 109.46943 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47198 * 299.99633 * 1 2 3 31 31 H 1.08996 * 109.47463 * 59.99856 * 1 2 3 32 32 H 1.08999 * 109.47309 * 60.00111 * 3 2 1 33 33 H 1.09002 * 109.47394 * 300.00063 * 3 2 1 34 34 H 1.09003 * 109.47422 * 59.99539 * 4 3 2 35 35 H 1.09006 * 109.47386 * 299.99899 * 4 3 2 36 36 H 1.08999 * 109.47074 * 60.00087 * 7 5 4 37 37 H 1.09001 * 109.46696 * 179.97438 * 7 5 4 38 38 H 1.08997 * 109.46883 * 299.99931 * 7 5 4 39 39 H 0.97003 * 119.99576 * 359.97438 * 10 8 5 40 40 H 1.09003 * 109.47157 * 60.00018 * 11 10 8 41 41 H 1.08999 * 109.47710 * 299.99798 * 11 10 8 42 42 H 1.07999 * 126.90548 * 0.03943 * 13 12 11 43 43 H 1.08998 * 112.94160 * 145.33127 * 15 14 13 44 44 H 1.09003 * 113.77443 * 336.35083 * 16 15 14 45 45 H 1.09001 * 113.77035 * 107.74778 * 16 15 14 46 46 H 0.96995 * 120.00273 * 179.97438 * 21 20 18 47 47 H 1.08997 * 113.76663 * 221.15571 * 26 17 16 48 48 H 1.08995 * 113.86848 * 89.77011 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5824 0.0000 6 1 3.7674 3.1535 0.8423 7 6 3.8078 3.2971 -1.3068 8 6 5.6551 2.4655 0.1232 9 8 6.1735 1.3720 0.2031 10 7 6.4182 3.5763 0.1456 11 6 7.8737 3.4627 0.2659 12 6 8.4867 4.8393 0.2664 13 6 8.8162 5.5788 1.3511 14 7 9.3361 6.7343 0.8759 15 6 9.8383 7.8467 1.6861 16 6 10.0463 7.4891 3.1689 17 7 9.4489 8.8084 3.4649 18 6 9.5270 9.6825 4.5160 19 1 9.0644 10.6557 4.4444 20 6 10.2007 9.3176 5.6735 21 7 10.8488 8.1732 5.7249 22 14 10.1876 10.4509 7.1584 23 1 9.1015 10.0408 8.0845 24 1 11.4941 10.3644 7.8587 25 1 9.9564 11.8484 6.7125 26 6 8.7369 8.8062 2.1721 27 7 9.3131 6.6881 -0.4102 28 7 8.8091 5.5724 -0.8052 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8567 0.6438 -0.8908 35 1 3.8575 0.6436 0.8892 36 1 2.7247 3.3816 -1.3960 37 1 4.2507 4.2930 -1.3061 38 1 4.1982 2.7259 -2.1491 39 1 6.0035 4.4509 0.0820 40 1 8.2645 2.8917 -0.5764 41 1 8.1228 2.9534 1.1968 42 1 8.6932 5.3006 2.3874 43 1 10.6913 8.3514 1.2326 44 1 9.4418 6.6473 3.5069 45 1 11.0940 7.4051 3.4579 46 1 11.3198 7.9184 6.5336 47 1 8.7411 9.7719 1.6666 48 1 7.7467 8.3528 2.2148 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107238152.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:58 Heat of formation + Delta-G solvation = 42.266136 kcal Electronic energy + Delta-G solvation = -28291.322173 eV Core-core repulsion = 24191.682509 eV Total energy + Delta-G solvation = -4099.639664 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.34968 -40.98863 -39.93589 -38.88936 -36.39207 -35.83405 -34.95423 -33.65568 -32.46477 -30.23909 -29.69776 -27.92579 -27.19916 -26.83851 -26.02771 -25.53187 -23.42442 -22.88620 -22.22469 -21.14128 -20.83946 -19.04014 -18.63044 -18.04722 -17.59615 -17.25537 -16.99946 -16.95930 -16.62017 -16.43075 -15.95594 -15.84863 -15.72700 -15.06820 -14.90408 -14.76718 -14.39343 -14.18064 -13.93032 -13.74803 -13.61649 -13.41013 -13.34110 -12.96427 -12.79594 -12.71889 -12.63198 -12.56575 -12.41642 -12.18392 -12.09440 -11.88216 -11.83618 -11.78757 -11.74293 -11.05935 -10.95040 -10.85500 -10.55336 -10.26499 -10.12538 -9.09466 -8.02446 -5.36723 0.56968 1.24086 1.29475 1.47972 1.50301 1.57657 1.63863 2.31323 2.42983 2.92476 3.06522 3.12334 3.32556 3.33359 3.65092 3.74122 3.90276 3.92991 3.99662 4.03545 4.16373 4.27647 4.33879 4.42295 4.49892 4.51656 4.57677 4.58905 4.59781 4.62802 4.70469 4.87097 4.90326 4.92518 4.93309 5.02217 5.04237 5.04643 5.08830 5.25292 5.34398 5.37064 5.37604 5.66517 5.76781 6.27895 6.51321 6.80168 7.21504 7.46179 7.48622 8.34299 9.14967 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013505 B = 0.001964 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.784831 B =14255.259587 C =15469.631446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.423 6.423 3 C 0.061 3.939 4 C -0.096 4.096 5 C -0.099 4.099 6 H 0.125 0.875 7 C -0.145 4.145 8 C 0.518 3.482 9 O -0.581 6.581 10 N -0.714 5.714 11 C 0.218 3.782 12 C -0.049 4.049 13 C -0.013 4.013 14 N -0.268 5.268 15 C 0.104 3.896 16 C 0.168 3.832 17 N -0.627 5.627 18 C -0.239 4.239 19 H 0.092 0.908 20 C -0.054 4.054 21 N -0.947 5.947 22 Si 0.977 3.023 23 H -0.287 1.287 24 H -0.295 1.295 25 H -0.266 1.266 26 C 0.126 3.874 27 N -0.108 5.108 28 N -0.280 5.280 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.053 0.947 39 H 0.412 0.588 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.207 0.793 43 H 0.139 0.861 44 H 0.048 0.952 45 H 0.060 0.940 46 H 0.253 0.747 47 H 0.076 0.924 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.413 -9.424 -11.438 22.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.343 6.343 3 C -0.015 4.015 4 C -0.135 4.135 5 C -0.120 4.120 6 H 0.142 0.858 7 C -0.203 4.203 8 C 0.306 3.694 9 O -0.460 6.460 10 N -0.366 5.366 11 C 0.093 3.907 12 C -0.188 4.188 13 C -0.167 4.167 14 N -0.061 5.061 15 C 0.002 3.998 16 C 0.041 3.959 17 N -0.355 5.355 18 C -0.367 4.367 19 H 0.109 0.891 20 C -0.249 4.249 21 N -0.594 5.594 22 Si 0.805 3.195 23 H -0.214 1.214 24 H -0.222 1.222 25 H -0.191 1.191 26 C 0.000 4.000 27 N -0.086 5.086 28 N -0.147 5.147 29 H 0.110 0.890 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.248 0.752 40 H 0.096 0.904 41 H 0.112 0.888 42 H 0.223 0.777 43 H 0.156 0.844 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.062 0.938 47 H 0.094 0.906 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.460 -9.428 -12.396 22.660 hybrid contribution -0.041 0.522 2.058 2.123 sum -16.501 -8.906 -10.339 21.413 Atomic orbital electron populations 1.22916 0.79426 1.03691 1.01016 1.87843 1.21555 1.29269 1.95660 1.22666 0.92722 0.84385 1.01765 1.21206 0.93628 0.95558 1.03074 1.21205 0.89532 0.98427 1.02810 0.85751 1.21881 1.03788 1.00289 0.94326 1.21071 0.90404 0.83311 0.74657 1.90708 1.75876 1.28203 1.51260 1.45964 1.06474 1.09770 1.74380 1.19244 0.79480 0.88389 1.03624 1.21906 1.08463 0.99537 0.88871 1.23829 1.02784 0.87179 1.02883 1.47715 1.38312 1.14401 1.05636 1.24721 0.99646 0.85289 0.90169 1.22567 0.99330 0.88835 0.85152 1.45885 1.52691 1.18754 1.18124 1.19337 1.30365 0.95576 0.91396 0.89073 1.25614 1.00024 0.98828 1.00402 1.69924 1.37182 1.23912 1.28386 0.85082 0.76555 0.78613 0.79208 1.21433 1.22215 1.19052 1.23018 0.93987 0.97736 0.85298 1.78281 1.19976 1.16686 0.93682 1.75011 1.13420 0.99263 1.26993 0.88982 0.93092 0.92860 0.91832 0.91221 0.92099 0.92235 0.89249 0.90984 0.92744 0.75206 0.90418 0.88798 0.77662 0.84375 0.93446 0.92194 0.93774 0.90574 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.42 -7.67 10.70 -148.98 -1.59 -9.26 16 3 C 0.06 0.82 5.69 71.98 0.41 1.23 16 4 C -0.10 -1.67 4.40 30.59 0.13 -1.54 16 5 C -0.10 -1.38 2.73 -11.54 -0.03 -1.41 16 6 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 7 C -0.15 -1.52 8.84 71.98 0.64 -0.88 16 8 C 0.52 10.98 7.15 87.65 0.63 11.60 16 9 O -0.58 -17.31 15.92 -3.04 -0.05 -17.36 16 10 N -0.71 -13.59 5.44 -466.80 -2.54 -16.13 16 11 C 0.22 4.82 6.23 85.63 0.53 5.36 16 12 C -0.05 -1.25 6.62 41.60 0.28 -0.98 16 13 C -0.01 -0.36 10.72 83.49 0.89 0.54 16 14 N -0.27 -8.06 3.54 -332.02 -1.18 -9.24 16 15 C 0.10 3.35 5.14 46.74 0.24 3.59 16 16 C 0.17 6.67 6.81 86.44 0.59 7.26 16 17 N -0.63 -27.90 3.70 -716.63 -2.65 -30.55 16 18 C -0.24 -11.99 10.70 84.03 0.90 -11.09 16 19 H 0.09 4.37 7.83 -2.92 -0.02 4.34 16 20 C -0.05 -2.81 5.50 84.86 0.47 -2.34 16 21 N -0.95 -51.79 11.51 21.65 0.25 -51.54 16 22 Si 0.98 41.98 29.56 68.60 2.03 44.00 16 23 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.30 -12.92 7.11 99.48 0.71 -12.22 16 25 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 26 C 0.13 4.29 8.74 86.49 0.76 5.04 16 27 N -0.11 -3.49 13.17 37.02 0.49 -3.00 16 28 N -0.28 -8.66 12.41 -48.60 -0.60 -9.26 16 29 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.68 6.57 -2.39 -0.02 0.66 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.24 16 35 H 0.06 1.28 7.95 -2.38 -0.02 1.26 16 36 H 0.09 0.59 6.57 -2.39 -0.02 0.57 16 37 H 0.07 0.66 7.57 -2.39 -0.02 0.64 16 38 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.41 6.42 7.88 -92.71 -0.73 5.68 16 40 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.21 4.73 6.73 -2.91 -0.02 4.71 16 43 H 0.14 4.30 8.14 -2.39 -0.02 4.28 16 44 H 0.05 1.84 6.31 -2.39 -0.02 1.82 16 45 H 0.06 2.73 7.37 -2.39 -0.02 2.71 16 46 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 47 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 48 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -67.63 398.33 2.07 -65.56 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.24 Total: 18.87 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: 7.68 Total: 17.90 kcal Atomic # 7 Polarization: -113.48 SS G_CDS: -6.23 Total: -119.72 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -1.64 Total: -26.62 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.00 kcal Total: -67.63 2.07 -65.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107238152.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.826 kcal (2) G-P(sol) polarization free energy of solvation -67.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds