Wall clock time and date at job start Tue Mar 31 2020 20:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.47257 * 2 1 4 4 N 1.28708 * 126.03965 * 275.15021 * 3 2 1 5 5 N 1.28512 * 110.63872 * 179.97438 * 4 3 2 6 6 C 1.33315 * 109.44115 * 359.72203 * 5 4 3 7 7 C 1.50698 * 126.81655 * 180.27874 * 6 5 4 8 8 C 1.37007 * 106.36918 * 0.42833 * 6 5 4 9 9 C 1.47240 * 127.18950 * 179.84132 * 8 6 5 10 10 O 1.21622 * 119.99724 * 86.93198 * 9 8 6 11 11 N 1.34774 * 120.00157 * 266.93341 * 9 8 6 12 12 C 1.46505 * 119.99804 * 174.60009 * 11 9 8 13 13 C 1.52997 * 109.46915 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.55520 * 60.12744 * 13 12 11 15 15 C 1.53297 * 109.50858 * 180.25766 * 13 12 11 16 16 N 1.47236 * 108.40350 * 172.23078 * 15 13 12 17 17 C 1.36935 * 121.03349 * 129.45917 * 16 15 13 18 18 H 1.08001 * 119.99594 * 328.47457 * 17 16 15 19 19 C 1.38807 * 119.99880 * 148.46964 * 17 16 15 20 20 N 1.31626 * 119.99868 * 167.38111 * 19 17 16 21 21 Si 1.86799 * 120.00106 * 347.38517 * 19 17 16 22 22 H 1.48504 * 109.47222 * 85.65428 * 21 19 17 23 23 H 1.48500 * 109.47135 * 205.64743 * 21 19 17 24 24 H 1.48494 * 109.47215 * 325.65094 * 21 19 17 25 25 C 1.47150 * 117.98137 * 309.48358 * 16 15 13 26 26 C 1.53295 * 108.42125 * 50.51715 * 25 16 15 27 27 O 1.42954 * 109.22259 * 307.68349 * 26 25 16 28 28 H 1.09000 * 109.46664 * 299.99471 * 1 2 3 29 29 H 1.09000 * 109.46910 * 59.99445 * 1 2 3 30 30 H 1.08999 * 109.46929 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46948 * 240.00964 * 2 1 3 32 32 H 1.08995 * 109.47343 * 120.00393 * 2 1 3 33 33 H 1.08995 * 109.47338 * 270.17846 * 7 6 5 34 34 H 1.09002 * 109.47170 * 30.18492 * 7 6 5 35 35 H 1.09005 * 109.47384 * 150.17929 * 7 6 5 36 36 H 0.96994 * 120.00134 * 354.60773 * 11 9 8 37 37 H 1.08999 * 109.46826 * 59.99745 * 12 11 9 38 38 H 1.08999 * 109.47075 * 300.00104 * 12 11 9 39 39 H 1.08994 * 109.47084 * 299.87013 * 14 13 12 40 40 H 1.09001 * 109.46798 * 59.87567 * 14 13 12 41 41 H 1.09004 * 109.46865 * 179.87200 * 14 13 12 42 42 H 1.09004 * 109.68102 * 291.94178 * 15 13 12 43 43 H 1.08996 * 109.68315 * 52.50249 * 15 13 12 44 44 H 0.96995 * 119.99578 * 180.02562 * 20 19 17 45 45 H 1.09007 * 109.68158 * 290.77334 * 25 16 15 46 46 H 1.09000 * 109.67910 * 170.26362 * 25 16 15 47 47 H 1.09008 * 109.50814 * 67.60349 * 26 25 16 48 48 H 1.08994 * 109.51286 * 187.69795 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1828 2.1263 -1.0365 5 7 2.6242 3.2844 -0.6966 6 6 2.7619 3.3353 0.6285 7 6 3.2452 4.5083 1.4417 8 6 2.3802 2.1083 1.1038 9 6 2.3577 1.6655 2.5078 10 8 1.3777 1.8768 3.1964 11 7 3.4229 1.0259 3.0299 12 6 3.4494 0.6905 4.4558 13 6 4.7603 -0.0254 4.7870 14 6 5.9410 0.8912 4.4605 15 6 4.7862 -0.3826 6.2776 16 7 5.9630 -1.2299 6.5322 17 6 6.8380 -0.9373 7.5440 18 1 7.0097 0.0901 7.8292 19 6 7.5043 -1.9612 8.2032 20 7 8.5186 -1.6837 8.9949 21 14 6.9614 -3.7329 7.9668 22 1 7.6176 -4.2947 6.7588 23 1 7.3483 -4.5322 9.1570 24 1 5.4871 -3.7803 7.7965 25 6 6.1710 -2.4010 5.6658 26 6 6.0776 -1.9456 4.2050 27 8 4.8584 -1.2240 4.0141 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 4.3287 4.4554 1.5476 34 1 2.9742 5.4361 0.9378 35 1 2.7820 4.4821 2.4281 36 1 4.1721 0.7879 2.4617 37 1 2.6089 0.0376 4.6911 38 1 3.3758 1.6043 5.0455 39 1 5.9245 1.1410 3.3997 40 1 5.8656 1.8048 5.0503 41 1 6.8741 0.3807 4.6991 42 1 4.8546 0.5284 6.8722 43 1 3.8788 -0.9261 6.5406 44 1 8.9843 -2.3993 9.4552 45 1 5.4030 -3.1478 5.8673 46 1 7.1562 -2.8274 5.8552 47 1 6.9236 -1.2995 3.9703 48 1 6.0924 -2.8169 3.5504 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107994253.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:58 Heat of formation + Delta-G solvation = 46.751501 kcal Electronic energy + Delta-G solvation = -30560.473883 eV Core-core repulsion = 26461.028719 eV Total energy + Delta-G solvation = -4099.445164 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.54461 -40.09880 -39.08350 -35.99949 -35.42739 -34.59762 -33.09537 -32.24869 -31.55338 -31.15090 -28.57152 -28.26178 -26.85707 -26.11278 -25.05860 -23.44301 -23.23606 -21.60228 -21.45959 -20.61223 -19.26310 -18.36502 -17.20665 -16.91888 -16.81668 -16.26904 -15.87340 -15.66639 -15.28397 -14.80024 -14.79178 -14.48016 -14.13440 -14.02643 -13.95077 -13.70766 -13.64515 -13.10747 -12.90896 -12.84009 -12.54912 -12.52891 -12.43490 -12.18894 -11.99010 -11.95661 -11.71140 -11.56509 -11.20438 -11.15158 -10.94704 -10.59247 -10.44037 -10.39663 -10.33632 -9.79983 -9.65679 -9.47670 -9.43099 -9.32445 -8.70269 -7.06341 -6.07093 -3.52825 0.99177 1.60704 2.14588 2.26896 2.85326 3.18060 3.37457 3.39250 3.83996 3.94229 4.14197 4.33710 4.38625 4.39269 4.60065 4.61127 4.63644 4.96486 4.98950 5.06485 5.08118 5.20037 5.25061 5.25534 5.34937 5.46402 5.54026 5.57917 5.61469 5.64765 5.68704 5.69598 5.83768 5.92224 5.94016 6.06281 6.10406 6.12228 6.17365 6.35452 6.37948 6.45397 6.61295 7.12719 7.46249 7.76624 7.80084 8.13324 8.18881 8.74567 9.55019 9.91870 11.08499 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.020905 B = 0.002812 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.054567 B = 9956.367666 C =10495.403668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.266 5.266 4 N -0.064 5.064 5 N -0.269 5.269 6 C 0.029 3.971 7 C -0.074 4.074 8 C -0.063 4.063 9 C 0.593 3.407 10 O -0.517 6.517 11 N -0.700 5.700 12 C 0.136 3.864 13 C 0.086 3.914 14 C -0.168 4.168 15 C 0.132 3.868 16 N -0.604 5.604 17 C -0.263 4.263 18 H 0.088 0.912 19 C 0.026 3.974 20 N -0.910 5.910 21 Si 0.894 3.106 22 H -0.287 1.287 23 H -0.303 1.303 24 H -0.271 1.271 25 C 0.084 3.916 26 C 0.046 3.954 27 O -0.382 6.382 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.407 0.593 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.035 0.965 44 H 0.265 0.735 45 H 0.035 0.965 46 H 0.083 0.917 47 H 0.056 0.944 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.412 4.353 -16.828 20.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.014 4.014 3 N -0.064 5.064 4 N -0.043 5.043 5 N -0.134 5.134 6 C -0.111 4.111 7 C -0.133 4.133 8 C -0.197 4.197 9 C 0.374 3.626 10 O -0.391 6.391 11 N -0.352 5.352 12 C 0.013 3.987 13 C 0.045 3.955 14 C -0.226 4.226 15 C 0.005 3.995 16 N -0.329 5.329 17 C -0.391 4.391 18 H 0.105 0.895 19 C -0.173 4.173 20 N -0.553 5.553 21 Si 0.725 3.275 22 H -0.214 1.214 23 H -0.231 1.231 24 H -0.196 1.196 25 C -0.041 4.041 26 C -0.032 4.032 27 O -0.301 6.301 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.131 0.869 32 H 0.125 0.875 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.243 0.757 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.052 0.948 44 H 0.075 0.925 45 H 0.052 0.948 46 H 0.100 0.900 47 H 0.075 0.925 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.240 4.428 -17.803 22.054 hybrid contribution 0.463 -1.475 0.918 1.797 sum -11.778 2.954 -16.885 20.798 Atomic orbital electron populations 1.22172 0.92399 1.04261 1.04029 1.22274 0.97025 0.75869 1.06245 1.47852 1.41449 1.13384 1.03736 1.78164 1.16472 0.98044 1.11634 1.74833 1.15739 1.11029 1.11827 1.22158 1.02838 0.94963 0.91178 1.20199 1.01694 0.93327 0.98054 1.21882 1.12566 0.94976 0.90290 1.16769 0.83419 0.78416 0.83996 1.90872 1.32549 1.54966 1.60712 1.45935 1.20438 1.57272 1.11515 1.21513 0.97610 0.99792 0.79788 1.22249 0.93556 0.85292 0.94425 1.22274 1.00039 1.00006 1.00263 1.21482 0.90600 0.96126 0.91321 1.44276 1.25366 1.28410 1.34833 1.18871 1.17076 0.94101 1.09096 0.89487 1.25373 0.97536 0.98105 0.96309 1.69754 1.20875 1.32628 1.32013 0.86880 0.79305 0.85607 0.75722 1.21444 1.23117 1.19627 1.22122 1.00915 0.91014 0.90034 1.23091 0.86733 0.95441 0.97899 1.87811 1.39695 1.36625 1.65988 0.91116 0.91068 0.89332 0.86905 0.87550 0.89904 0.89791 0.90288 0.75662 0.90166 0.89365 0.93395 0.91516 0.90122 0.90650 0.94758 0.92539 0.94754 0.89951 0.92539 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 10.24 37.16 0.38 -0.76 16 2 C 0.11 0.78 6.99 -4.04 -0.03 0.75 16 3 N -0.27 -2.88 3.39 -57.37 -0.19 -3.08 16 4 N -0.06 -0.82 13.14 60.35 0.79 -0.02 16 5 N -0.27 -3.61 12.35 33.51 0.41 -3.20 16 6 C 0.03 0.34 7.30 -82.40 -0.60 -0.26 16 7 C -0.07 -0.66 10.28 36.00 0.37 -0.29 16 8 C -0.06 -0.74 6.74 -82.33 -0.55 -1.29 16 9 C 0.59 7.19 6.83 -12.60 -0.09 7.10 16 10 O -0.52 -7.82 17.12 5.26 0.09 -7.73 16 11 N -0.70 -7.65 5.15 -61.44 -0.32 -7.96 16 12 C 0.14 1.66 4.82 -4.04 -0.02 1.64 16 13 C 0.09 1.23 0.76 -90.47 -0.07 1.16 16 14 C -0.17 -2.29 7.92 37.16 0.29 -2.00 16 15 C 0.13 2.34 5.41 -3.49 -0.02 2.32 16 16 N -0.60 -13.15 2.31 -171.76 -0.40 -13.55 16 17 C -0.26 -6.86 10.11 -15.06 -0.15 -7.02 16 18 H 0.09 2.43 8.06 -52.49 -0.42 2.01 16 19 C 0.03 0.72 5.35 -17.43 -0.09 0.63 16 20 N -0.91 -26.79 13.97 55.49 0.78 -26.01 16 21 Si 0.89 21.50 24.21 -169.99 -4.12 17.38 16 22 H -0.29 -6.53 6.42 56.52 0.36 -6.17 16 23 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 24 H -0.27 -6.47 6.55 56.52 0.37 -6.10 16 25 C 0.08 1.69 4.34 -3.53 -0.02 1.68 16 26 C 0.05 0.73 6.60 37.31 0.25 0.98 16 27 O -0.38 -5.78 9.97 -35.23 -0.35 -6.13 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.11 0.72 7.75 -51.93 -0.40 0.32 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.69 8.02 -51.93 -0.42 0.27 16 36 H 0.41 4.11 7.19 -40.82 -0.29 3.81 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 0.55 6.88 -51.93 -0.36 0.19 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.08 1.32 6.11 -51.93 -0.32 1.01 16 42 H 0.08 1.31 7.96 -51.93 -0.41 0.89 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 45 H 0.03 0.71 6.73 -51.93 -0.35 0.36 16 46 H 0.08 1.79 4.66 -51.93 -0.24 1.55 16 47 H 0.06 0.89 6.25 -51.92 -0.32 0.56 16 48 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 382.85 15.07 5.77 5.77 Total: -1.00 -32.52 382.85 -5.28 -37.80 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -7.40 Total: 2.10 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -0.35 Total: 4.64 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 1.07 Total: -53.82 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.26 Total: -13.87 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.12 Total: 17.38 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.52 -5.28 -37.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107994253.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.547 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds