Wall clock time and date at job start Tue Mar 31 2020 20:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.47257 * 2 1 4 4 N 1.28708 * 126.03965 * 275.15021 * 3 2 1 5 5 N 1.28512 * 110.63872 * 179.97438 * 4 3 2 6 6 C 1.33315 * 109.44115 * 359.72203 * 5 4 3 7 7 C 1.50698 * 126.81655 * 180.27874 * 6 5 4 8 8 C 1.37007 * 106.36918 * 0.42833 * 6 5 4 9 9 C 1.47240 * 127.18950 * 179.84132 * 8 6 5 10 10 O 1.21622 * 119.99724 * 86.93198 * 9 8 6 11 11 N 1.34774 * 120.00157 * 266.93341 * 9 8 6 12 12 C 1.46505 * 119.99804 * 174.60009 * 11 9 8 13 13 C 1.52997 * 109.46915 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.55520 * 60.12744 * 13 12 11 15 15 C 1.53297 * 109.50858 * 180.25766 * 13 12 11 16 16 N 1.47236 * 108.40350 * 172.23078 * 15 13 12 17 17 C 1.36935 * 121.03349 * 129.45917 * 16 15 13 18 18 H 1.08001 * 119.99594 * 328.47457 * 17 16 15 19 19 C 1.38807 * 119.99880 * 148.46964 * 17 16 15 20 20 N 1.31626 * 119.99868 * 167.38111 * 19 17 16 21 21 Si 1.86799 * 120.00106 * 347.38517 * 19 17 16 22 22 H 1.48504 * 109.47222 * 85.65428 * 21 19 17 23 23 H 1.48500 * 109.47135 * 205.64743 * 21 19 17 24 24 H 1.48494 * 109.47215 * 325.65094 * 21 19 17 25 25 C 1.47150 * 117.98137 * 309.48358 * 16 15 13 26 26 C 1.53295 * 108.42125 * 50.51715 * 25 16 15 27 27 O 1.42954 * 109.22259 * 307.68349 * 26 25 16 28 28 H 1.09000 * 109.46664 * 299.99471 * 1 2 3 29 29 H 1.09000 * 109.46910 * 59.99445 * 1 2 3 30 30 H 1.08999 * 109.46929 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46948 * 240.00964 * 2 1 3 32 32 H 1.08995 * 109.47343 * 120.00393 * 2 1 3 33 33 H 1.08995 * 109.47338 * 270.17846 * 7 6 5 34 34 H 1.09002 * 109.47170 * 30.18492 * 7 6 5 35 35 H 1.09005 * 109.47384 * 150.17929 * 7 6 5 36 36 H 0.96994 * 120.00134 * 354.60773 * 11 9 8 37 37 H 1.08999 * 109.46826 * 59.99745 * 12 11 9 38 38 H 1.08999 * 109.47075 * 300.00104 * 12 11 9 39 39 H 1.08994 * 109.47084 * 299.87013 * 14 13 12 40 40 H 1.09001 * 109.46798 * 59.87567 * 14 13 12 41 41 H 1.09004 * 109.46865 * 179.87200 * 14 13 12 42 42 H 1.09004 * 109.68102 * 291.94178 * 15 13 12 43 43 H 1.08996 * 109.68315 * 52.50249 * 15 13 12 44 44 H 0.96995 * 119.99578 * 180.02562 * 20 19 17 45 45 H 1.09007 * 109.68158 * 290.77334 * 25 16 15 46 46 H 1.09000 * 109.67910 * 170.26362 * 25 16 15 47 47 H 1.09008 * 109.50814 * 67.60349 * 26 25 16 48 48 H 1.08994 * 109.51286 * 187.69795 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1828 2.1263 -1.0365 5 7 2.6242 3.2844 -0.6966 6 6 2.7619 3.3353 0.6285 7 6 3.2452 4.5083 1.4417 8 6 2.3802 2.1083 1.1038 9 6 2.3577 1.6655 2.5078 10 8 1.3777 1.8768 3.1964 11 7 3.4229 1.0259 3.0299 12 6 3.4494 0.6905 4.4558 13 6 4.7603 -0.0254 4.7870 14 6 5.9410 0.8912 4.4605 15 6 4.7862 -0.3826 6.2776 16 7 5.9630 -1.2299 6.5322 17 6 6.8380 -0.9373 7.5440 18 1 7.0097 0.0901 7.8292 19 6 7.5043 -1.9612 8.2032 20 7 8.5186 -1.6837 8.9949 21 14 6.9614 -3.7329 7.9668 22 1 7.6176 -4.2947 6.7588 23 1 7.3483 -4.5322 9.1570 24 1 5.4871 -3.7803 7.7965 25 6 6.1710 -2.4010 5.6658 26 6 6.0776 -1.9456 4.2050 27 8 4.8584 -1.2240 4.0141 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 4.3287 4.4554 1.5476 34 1 2.9742 5.4361 0.9378 35 1 2.7820 4.4821 2.4281 36 1 4.1721 0.7879 2.4617 37 1 2.6089 0.0376 4.6911 38 1 3.3758 1.6043 5.0455 39 1 5.9245 1.1410 3.3997 40 1 5.8656 1.8048 5.0503 41 1 6.8741 0.3807 4.6991 42 1 4.8546 0.5284 6.8722 43 1 3.8788 -0.9261 6.5406 44 1 8.9843 -2.3993 9.4552 45 1 5.4030 -3.1478 5.8673 46 1 7.1562 -2.8274 5.8552 47 1 6.9236 -1.2995 3.9703 48 1 6.0924 -2.8169 3.5504 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107994253.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:57 Heat of formation + Delta-G solvation = 22.337257 kcal Electronic energy + Delta-G solvation = -30561.532564 eV Core-core repulsion = 26461.028719 eV Total energy + Delta-G solvation = -4100.503845 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.41156 -41.23955 -40.27029 -36.81332 -36.72510 -35.96731 -34.03489 -33.67228 -33.12888 -31.91712 -29.96142 -29.09954 -28.11094 -27.52092 -25.80685 -24.81345 -24.41308 -23.04092 -22.26424 -21.53766 -20.56635 -19.31747 -18.91214 -17.98830 -17.70118 -17.39374 -17.30653 -16.90218 -16.19477 -16.07214 -15.91957 -15.67813 -15.48716 -15.42561 -14.98328 -14.72339 -14.43662 -14.29001 -14.08941 -13.79525 -13.70083 -13.52899 -13.45730 -13.29913 -13.14229 -13.02365 -12.94173 -12.57854 -12.56165 -12.36661 -12.16490 -12.09910 -12.01514 -11.58030 -11.51478 -11.22817 -11.20161 -11.02689 -10.51576 -10.32214 -10.28523 -8.87003 -8.17734 -5.58646 0.12485 0.77553 1.24696 1.26616 1.37969 1.40690 1.48373 1.92712 2.38510 2.65292 3.05468 3.15832 3.20077 3.40773 3.56555 3.77804 3.80215 3.82415 3.88656 3.98081 4.13190 4.23863 4.25853 4.29860 4.46914 4.55080 4.58365 4.59339 4.65539 4.68456 4.71870 4.76662 4.76910 4.86150 4.91540 4.94285 5.01648 5.05159 5.06211 5.13571 5.21839 5.35071 5.38342 5.83768 6.11194 6.20043 6.21818 6.83022 6.84301 7.24259 7.54385 7.96501 9.01725 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.020905 B = 0.002812 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.054567 B = 9956.367666 C =10495.403668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.096 3.904 3 N -0.257 5.257 4 N -0.078 5.078 5 N -0.296 5.296 6 C 0.024 3.976 7 C -0.074 4.074 8 C -0.073 4.073 9 C 0.606 3.394 10 O -0.548 6.548 11 N -0.686 5.686 12 C 0.145 3.855 13 C 0.098 3.902 14 C -0.163 4.163 15 C 0.124 3.876 16 N -0.617 5.617 17 C -0.243 4.243 18 H 0.057 0.943 19 C -0.033 4.033 20 N -0.960 5.960 21 Si 0.953 3.047 22 H -0.266 1.266 23 H -0.316 1.316 24 H -0.267 1.267 25 C 0.077 3.923 26 C 0.055 3.945 27 O -0.376 6.376 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.114 0.886 31 H 0.137 0.863 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.415 0.585 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.052 0.948 42 H 0.073 0.927 43 H 0.037 0.963 44 H 0.262 0.738 45 H 0.034 0.966 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.548 3.586 -19.010 23.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.023 4.023 3 N -0.056 5.056 4 N -0.056 5.056 5 N -0.161 5.161 6 C -0.116 4.116 7 C -0.133 4.133 8 C -0.208 4.208 9 C 0.388 3.612 10 O -0.424 6.424 11 N -0.338 5.338 12 C 0.021 3.979 13 C 0.056 3.944 14 C -0.220 4.220 15 C -0.001 4.001 16 N -0.343 5.343 17 C -0.373 4.373 18 H 0.074 0.926 19 C -0.228 4.228 20 N -0.606 5.606 21 Si 0.782 3.218 22 H -0.192 1.192 23 H -0.245 1.245 24 H -0.191 1.191 25 C -0.048 4.048 26 C -0.022 4.022 27 O -0.295 6.295 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.133 0.867 31 H 0.155 0.845 32 H 0.133 0.867 33 H 0.117 0.883 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.252 0.748 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.055 0.945 44 H 0.071 0.929 45 H 0.052 0.948 46 H 0.082 0.918 47 H 0.077 0.923 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.398 3.654 -20.055 24.394 hybrid contribution 0.761 -1.169 1.583 2.110 sum -12.637 2.485 -18.472 22.519 Atomic orbital electron populations 1.22148 0.91951 1.05546 1.02657 1.22670 0.97388 0.74407 1.07855 1.48159 1.40247 1.14142 1.03033 1.78099 1.16965 0.98302 1.12269 1.74811 1.16882 1.11629 1.12731 1.22637 1.02283 0.95759 0.90938 1.20317 1.02625 0.92690 0.97655 1.21843 1.13397 0.95304 0.90237 1.16654 0.82942 0.77787 0.83836 1.90867 1.33751 1.56302 1.61464 1.45753 1.20365 1.56658 1.11016 1.21363 0.96011 0.99945 0.80554 1.22079 0.95021 0.85400 0.91858 1.22213 0.98119 0.99621 1.02092 1.21669 0.88998 0.95443 0.94032 1.44352 1.26050 1.29452 1.34427 1.18789 1.16551 0.92710 1.09231 0.92569 1.25999 0.97920 1.02034 0.96839 1.69895 1.22781 1.33613 1.34334 0.85909 0.79022 0.81029 0.75795 1.19173 1.24489 1.19147 1.22204 0.99787 0.90335 0.92477 1.23025 0.87155 0.96736 0.95305 1.87836 1.39390 1.36727 1.65548 0.93256 0.91559 0.86733 0.84540 0.86692 0.88328 0.88996 0.90178 0.74767 0.90373 0.88371 0.90723 0.91029 0.92940 0.90829 0.94493 0.92914 0.94795 0.91777 0.92295 0.86385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 10.24 71.98 0.74 -1.15 16 2 C 0.10 1.16 6.99 86.38 0.60 1.76 16 3 N -0.26 -5.08 3.39 -335.41 -1.14 -6.22 16 4 N -0.08 -1.86 13.14 37.02 0.49 -1.38 16 5 N -0.30 -7.61 12.35 -47.89 -0.59 -8.20 16 6 C 0.02 0.54 7.30 42.04 0.31 0.85 16 7 C -0.07 -1.19 10.28 71.24 0.73 -0.45 16 8 C -0.07 -1.57 6.74 40.41 0.27 -1.30 16 9 C 0.61 13.35 6.83 86.61 0.59 13.94 16 10 O -0.55 -15.65 17.12 -4.10 -0.07 -15.72 16 11 N -0.69 -12.93 5.15 -466.55 -2.40 -15.33 16 12 C 0.14 3.12 4.82 86.38 0.42 3.54 16 13 C 0.10 2.53 0.76 -10.70 -0.01 2.52 16 14 C -0.16 -4.05 7.92 71.98 0.57 -3.48 16 15 C 0.12 4.24 5.41 86.34 0.47 4.71 16 16 N -0.62 -26.39 2.31 -697.32 -1.61 -28.01 16 17 C -0.24 -12.88 10.11 84.03 0.85 -12.03 16 18 H 0.06 3.26 8.06 -2.91 -0.02 3.24 16 19 C -0.03 -1.84 5.35 84.86 0.45 -1.39 16 20 N -0.96 -58.26 13.97 21.65 0.30 -57.96 16 21 Si 0.95 44.61 24.21 68.60 1.66 46.27 16 22 H -0.27 -11.38 6.42 99.48 0.64 -10.74 16 23 H -0.32 -15.31 7.11 99.48 0.71 -14.61 16 24 H -0.27 -12.11 6.55 99.48 0.65 -11.45 16 25 C 0.08 2.92 4.34 86.35 0.38 3.29 16 26 C 0.06 1.58 6.60 72.08 0.48 2.06 16 27 O -0.38 -10.05 9.97 -148.98 -1.49 -11.54 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.11 1.21 7.75 -2.39 -0.02 1.19 16 33 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.08 1.26 8.02 -2.38 -0.02 1.24 16 36 H 0.41 6.84 7.19 -92.71 -0.67 6.17 16 37 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.07 1.45 6.88 -2.39 -0.02 1.44 16 40 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.05 1.64 6.11 -2.38 -0.01 1.62 16 42 H 0.07 2.50 7.96 -2.38 -0.02 2.49 16 43 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 45 H 0.03 1.31 6.73 -2.38 -0.02 1.29 16 46 H 0.06 2.67 4.66 -2.39 -0.01 2.66 16 47 H 0.06 1.68 6.25 -2.38 -0.01 1.67 16 48 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -71.73 382.85 2.18 -69.55 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 0.19 Total: 15.69 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 6.84 Total: 12.87 kcal Atomic # 7 Polarization: -112.15 SS G_CDS: -4.96 Total: -117.10 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -1.56 Total: -27.26 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.66 Total: 46.27 kcal Total: -71.73 2.18 -69.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107994253.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.885 kcal (2) G-P(sol) polarization free energy of solvation -71.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds