Wall clock time and date at job start Tue Mar 31 2020 20:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47571 * 2 1 4 4 N 1.28714 * 126.03502 * 275.23085 * 3 2 1 5 5 N 1.28514 * 110.64126 * 180.26163 * 4 3 2 6 6 C 1.33320 * 109.43687 * 359.75667 * 5 4 3 7 7 C 1.50697 * 126.81576 * 180.02562 * 6 5 4 8 8 C 1.37014 * 106.37116 * 359.97438 * 6 5 4 9 9 C 1.47235 * 127.18655 * 179.97438 * 8 6 5 10 10 O 1.21615 * 119.99542 * 83.04665 * 9 8 6 11 11 N 1.34779 * 119.99964 * 263.04263 * 9 8 6 12 12 C 1.46502 * 119.99515 * 185.10882 * 11 9 8 13 13 C 1.52999 * 109.46600 * 179.97438 * 12 11 9 14 14 C 1.52995 * 109.51732 * 304.89884 * 13 12 11 15 15 C 1.53293 * 109.55299 * 184.76970 * 13 12 11 16 16 N 1.47153 * 108.38635 * 187.75328 * 15 13 12 17 17 C 1.36941 * 120.98155 * 230.55997 * 16 15 13 18 18 H 1.08001 * 120.00056 * 146.07311 * 17 16 15 19 19 C 1.38811 * 119.99864 * 326.07286 * 17 16 15 20 20 N 1.31626 * 120.00138 * 348.84661 * 19 17 16 21 21 Si 1.86796 * 120.00164 * 168.84428 * 19 17 16 22 22 H 1.48503 * 109.47117 * 90.00187 * 21 19 17 23 23 H 1.48500 * 109.47576 * 209.99935 * 21 19 17 24 24 H 1.48494 * 109.47268 * 330.00224 * 21 19 17 25 25 C 1.47145 * 118.03573 * 50.53489 * 16 15 13 26 26 C 1.53291 * 108.38815 * 309.46443 * 25 16 15 27 27 O 1.42966 * 109.51037 * 65.00188 * 13 12 11 28 28 H 1.08999 * 109.46488 * 60.00087 * 1 2 3 29 29 H 1.08999 * 109.47526 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46712 * 300.00525 * 1 2 3 31 31 H 1.09005 * 109.47245 * 239.99334 * 2 1 3 32 32 H 1.09003 * 109.46944 * 119.99733 * 2 1 3 33 33 H 1.08996 * 109.47169 * 269.95604 * 7 6 5 34 34 H 1.08999 * 109.46771 * 29.95521 * 7 6 5 35 35 H 1.08994 * 109.47324 * 149.95267 * 7 6 5 36 36 H 0.96999 * 119.99863 * 5.11179 * 11 9 8 37 37 H 1.08998 * 109.47207 * 59.99983 * 12 11 9 38 38 H 1.09003 * 109.46905 * 299.99871 * 12 11 9 39 39 H 1.08998 * 109.47261 * 180.10337 * 14 13 12 40 40 H 1.08997 * 109.47307 * 300.10337 * 14 13 12 41 41 H 1.09004 * 109.46954 * 60.09968 * 14 13 12 42 42 H 1.09002 * 109.68408 * 307.47377 * 15 13 12 43 43 H 1.09001 * 109.68321 * 67.99205 * 15 13 12 44 44 H 0.96998 * 119.99737 * 180.02562 * 20 19 17 45 45 H 1.09006 * 109.67968 * 189.74069 * 25 16 15 46 46 H 1.08997 * 109.68275 * 69.19339 * 25 16 15 47 47 H 1.08996 * 109.51511 * 172.22618 * 26 25 16 48 48 H 1.08996 * 109.51230 * 292.33043 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.1814 2.1266 -1.0365 5 7 2.6290 3.2826 -0.6973 6 6 2.7733 3.3313 0.6272 7 6 3.2701 4.4996 1.4391 8 6 2.3793 2.1086 1.1038 9 6 2.3553 1.6665 2.5080 10 8 1.4101 1.9502 3.2186 11 7 3.3808 0.9473 3.0056 12 6 3.3072 0.4121 4.3674 13 6 4.5905 -0.3592 4.6821 14 6 4.8141 -1.4353 3.6178 15 6 4.4672 -1.0197 6.0600 16 7 5.7738 -1.5942 6.4179 17 6 5.8813 -2.8926 6.8399 18 1 6.7580 -3.4712 6.5889 19 6 4.8633 -3.4649 7.5903 20 7 3.9040 -2.7098 8.0823 21 14 4.8548 -5.3067 7.9017 22 1 5.6030 -5.6011 9.1502 23 1 3.4537 -5.7787 8.0414 24 1 5.5008 -6.0046 6.7612 25 6 6.9616 -0.7326 6.3083 26 6 6.9635 -0.0861 4.9184 27 8 5.6999 0.5425 4.6900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8899 31 1 1.8934 -0.5140 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.3531 4.4354 1.5432 34 1 3.0080 5.4299 0.9351 35 1 2.8083 4.4787 2.4261 36 1 4.1675 0.7841 2.4622 37 1 2.4516 -0.2582 4.4486 38 1 3.1937 1.2336 5.0749 39 1 5.7275 -1.9855 3.8437 40 1 3.9680 -2.1223 3.6123 41 1 4.9062 -0.9645 2.6390 42 1 4.1792 -0.2735 6.8004 43 1 3.7163 -1.8090 6.0229 44 1 3.1929 -3.1098 8.6070 45 1 7.8630 -1.3322 6.4356 46 1 6.9247 0.0425 7.0738 47 1 7.7562 0.6600 4.8650 48 1 7.1323 -0.8515 4.1611 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107994254.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:01 Heat of formation + Delta-G solvation = 39.771067 kcal Electronic energy + Delta-G solvation = -30684.079136 eV Core-core repulsion = 26584.331278 eV Total energy + Delta-G solvation = -4099.747859 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.45945 -39.88735 -38.82671 -35.92931 -35.15646 -34.42416 -32.96514 -31.88437 -31.35898 -31.05354 -28.21161 -28.04718 -26.67764 -25.82215 -24.95860 -23.36745 -23.15832 -21.42012 -21.26572 -20.48390 -18.92867 -18.19847 -17.22889 -16.75197 -16.69699 -16.02756 -15.61337 -15.28357 -15.13322 -14.85288 -14.47547 -14.14800 -14.04751 -13.95116 -13.64774 -13.59466 -13.18264 -13.02786 -12.86838 -12.78172 -12.60818 -12.44417 -12.12989 -12.04635 -11.89430 -11.73678 -11.30132 -11.11872 -11.09621 -10.92301 -10.77567 -10.45433 -10.40643 -10.36301 -10.26505 -10.10945 -9.63871 -9.34069 -9.18326 -9.08760 -8.64456 -6.72380 -5.94093 -3.45814 1.07266 1.69991 2.22774 2.41277 3.00145 3.26595 3.34240 3.34808 4.00347 4.11053 4.22879 4.34690 4.40618 4.50658 4.69046 4.70674 4.99290 5.05330 5.14572 5.24040 5.32054 5.34135 5.41649 5.45070 5.52190 5.55635 5.64710 5.70803 5.77844 5.81966 5.86873 5.91700 6.00864 6.02229 6.15569 6.20127 6.27227 6.37592 6.54059 6.62377 6.74789 6.93978 7.28826 7.33218 7.64445 7.75645 7.92288 8.21036 8.29162 9.02844 9.63206 10.24743 11.13831 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016132 B = 0.003057 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.264882 B = 9156.459324 C = 9979.466966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 N -0.267 5.267 4 N -0.066 5.066 5 N -0.270 5.270 6 C 0.028 3.972 7 C -0.074 4.074 8 C -0.061 4.061 9 C 0.591 3.409 10 O -0.516 6.516 11 N -0.701 5.701 12 C 0.137 3.863 13 C 0.077 3.923 14 C -0.163 4.163 15 C 0.165 3.835 16 N -0.589 5.589 17 C -0.261 4.261 18 H 0.064 0.936 19 C 0.012 3.988 20 N -0.899 5.899 21 Si 0.903 3.097 22 H -0.285 1.285 23 H -0.288 1.288 24 H -0.278 1.278 25 C 0.109 3.891 26 C 0.046 3.954 27 O -0.383 6.383 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.405 0.595 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.039 0.961 42 H 0.033 0.967 43 H 0.088 0.912 44 H 0.257 0.743 45 H 0.062 0.938 46 H 0.026 0.974 47 H 0.081 0.919 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.847 6.146 -14.334 15.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.014 4.014 3 N -0.065 5.065 4 N -0.045 5.045 5 N -0.135 5.135 6 C -0.112 4.112 7 C -0.133 4.133 8 C -0.195 4.195 9 C 0.372 3.628 10 O -0.390 6.390 11 N -0.353 5.353 12 C 0.014 3.986 13 C 0.036 3.964 14 C -0.220 4.220 15 C 0.038 3.962 16 N -0.312 5.312 17 C -0.390 4.390 18 H 0.082 0.918 19 C -0.188 4.188 20 N -0.542 5.542 21 Si 0.732 3.268 22 H -0.212 1.212 23 H -0.214 1.214 24 H -0.204 1.204 25 C -0.017 4.017 26 C -0.032 4.032 27 O -0.303 6.303 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.131 0.869 32 H 0.124 0.876 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.241 0.759 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.051 0.949 43 H 0.106 0.894 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.044 0.956 47 H 0.099 0.901 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.833 6.481 -15.237 16.799 hybrid contribution 0.418 -1.587 1.156 2.007 sum -2.416 4.894 -14.082 15.102 Atomic orbital electron populations 1.22175 0.92398 1.04291 1.04040 1.22268 0.97057 0.75931 1.06179 1.47830 1.41638 1.13300 1.03732 1.78151 1.16589 0.98070 1.11653 1.74822 1.15667 1.11103 1.11914 1.22167 1.02731 0.95124 0.91135 1.20196 1.01597 0.93313 0.98152 1.21931 1.12275 0.94968 0.90352 1.16787 0.83343 0.78662 0.84031 1.90873 1.34601 1.54463 1.59016 1.46069 1.19494 1.52603 1.17168 1.21512 0.97195 0.98419 0.81485 1.22563 0.85363 0.89236 0.99239 1.22221 1.04055 0.99049 0.96714 1.21199 0.89707 0.96969 0.88346 1.43888 1.01049 1.09417 1.76882 1.19074 1.05635 0.86785 1.27526 0.91800 1.25256 0.98901 0.98305 0.96385 1.69970 1.14015 1.33972 1.36234 0.86300 0.77048 0.85075 0.78330 1.21165 1.21444 1.20365 1.21622 0.92043 0.94144 0.93920 1.23055 0.84976 0.96935 0.98226 1.87829 1.14988 1.34407 1.93045 0.91063 0.89299 0.91115 0.86917 0.87609 0.89924 0.89888 0.90192 0.75864 0.89594 0.90057 0.90561 0.91806 0.94186 0.94938 0.89423 0.93333 0.91995 0.95562 0.90085 0.93443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 10.24 37.16 0.38 -0.89 16 2 C 0.11 0.85 6.99 -4.04 -0.03 0.82 16 3 N -0.27 -3.11 3.39 -57.37 -0.19 -3.30 16 4 N -0.07 -0.88 13.14 60.35 0.79 -0.09 16 5 N -0.27 -3.84 12.35 33.51 0.41 -3.43 16 6 C 0.03 0.37 7.30 -82.39 -0.60 -0.23 16 7 C -0.07 -0.75 10.28 36.00 0.37 -0.38 16 8 C -0.06 -0.79 6.74 -82.33 -0.55 -1.34 16 9 C 0.59 8.14 6.83 -12.60 -0.09 8.06 16 10 O -0.52 -8.77 17.11 5.26 0.09 -8.68 16 11 N -0.70 -8.98 5.19 -61.44 -0.32 -9.30 16 12 C 0.14 2.06 4.86 -4.04 -0.02 2.04 16 13 C 0.08 1.29 0.78 -90.47 -0.07 1.22 16 14 C -0.16 -2.46 7.86 37.15 0.29 -2.17 16 15 C 0.16 3.56 4.04 -3.53 -0.01 3.54 16 16 N -0.59 -13.60 2.53 -171.83 -0.43 -14.04 16 17 C -0.26 -6.64 9.59 -15.06 -0.14 -6.78 16 18 H 0.06 1.60 7.85 -52.49 -0.41 1.19 16 19 C 0.01 0.30 5.03 -17.43 -0.09 0.21 16 20 N -0.90 -24.60 11.38 55.49 0.63 -23.96 16 21 Si 0.90 20.41 29.57 -169.99 -5.03 15.39 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 C 0.11 2.13 6.73 -3.54 -0.02 2.11 16 26 C 0.05 0.74 6.60 37.31 0.25 0.99 16 27 O -0.38 -6.54 10.17 -35.23 -0.36 -6.90 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.11 0.78 7.75 -51.93 -0.40 0.38 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.83 8.02 -51.93 -0.42 0.41 16 36 H 0.41 4.73 6.99 -40.82 -0.29 4.44 16 37 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.08 1.30 6.11 -51.93 -0.32 0.98 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.04 0.49 6.59 -51.93 -0.34 0.15 16 42 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.09 2.08 6.56 -51.93 -0.34 1.74 16 44 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 45 H 0.06 1.16 7.96 -51.93 -0.41 0.74 16 46 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 48 H 0.05 0.74 6.26 -51.93 -0.32 0.42 16 LS Contribution 390.11 15.07 5.88 5.88 Total: -1.00 -31.26 390.11 -6.33 -37.59 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -7.46 Total: 3.64 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -0.34 Total: 7.20 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.89 Total: -54.12 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.27 Total: -15.58 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.26 -6.33 -37.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107994254.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.362 kcal (2) G-P(sol) polarization free energy of solvation -31.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds