Wall clock time and date at job start Tue Mar 31 2020 20:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47571 * 2 1 4 4 N 1.28714 * 126.03502 * 275.23085 * 3 2 1 5 5 N 1.28514 * 110.64126 * 180.26163 * 4 3 2 6 6 C 1.33320 * 109.43687 * 359.75667 * 5 4 3 7 7 C 1.50697 * 126.81576 * 180.02562 * 6 5 4 8 8 C 1.37014 * 106.37116 * 359.97438 * 6 5 4 9 9 C 1.47235 * 127.18655 * 179.97438 * 8 6 5 10 10 O 1.21615 * 119.99542 * 83.04665 * 9 8 6 11 11 N 1.34779 * 119.99964 * 263.04263 * 9 8 6 12 12 C 1.46502 * 119.99515 * 185.10882 * 11 9 8 13 13 C 1.52999 * 109.46600 * 179.97438 * 12 11 9 14 14 C 1.52995 * 109.51732 * 304.89884 * 13 12 11 15 15 C 1.53293 * 109.55299 * 184.76970 * 13 12 11 16 16 N 1.47153 * 108.38635 * 187.75328 * 15 13 12 17 17 C 1.36941 * 120.98155 * 230.55997 * 16 15 13 18 18 H 1.08001 * 120.00056 * 146.07311 * 17 16 15 19 19 C 1.38811 * 119.99864 * 326.07286 * 17 16 15 20 20 N 1.31626 * 120.00138 * 348.84661 * 19 17 16 21 21 Si 1.86796 * 120.00164 * 168.84428 * 19 17 16 22 22 H 1.48503 * 109.47117 * 90.00187 * 21 19 17 23 23 H 1.48500 * 109.47576 * 209.99935 * 21 19 17 24 24 H 1.48494 * 109.47268 * 330.00224 * 21 19 17 25 25 C 1.47145 * 118.03573 * 50.53489 * 16 15 13 26 26 C 1.53291 * 108.38815 * 309.46443 * 25 16 15 27 27 O 1.42966 * 109.51037 * 65.00188 * 13 12 11 28 28 H 1.08999 * 109.46488 * 60.00087 * 1 2 3 29 29 H 1.08999 * 109.47526 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46712 * 300.00525 * 1 2 3 31 31 H 1.09005 * 109.47245 * 239.99334 * 2 1 3 32 32 H 1.09003 * 109.46944 * 119.99733 * 2 1 3 33 33 H 1.08996 * 109.47169 * 269.95604 * 7 6 5 34 34 H 1.08999 * 109.46771 * 29.95521 * 7 6 5 35 35 H 1.08994 * 109.47324 * 149.95267 * 7 6 5 36 36 H 0.96999 * 119.99863 * 5.11179 * 11 9 8 37 37 H 1.08998 * 109.47207 * 59.99983 * 12 11 9 38 38 H 1.09003 * 109.46905 * 299.99871 * 12 11 9 39 39 H 1.08998 * 109.47261 * 180.10337 * 14 13 12 40 40 H 1.08997 * 109.47307 * 300.10337 * 14 13 12 41 41 H 1.09004 * 109.46954 * 60.09968 * 14 13 12 42 42 H 1.09002 * 109.68408 * 307.47377 * 15 13 12 43 43 H 1.09001 * 109.68321 * 67.99205 * 15 13 12 44 44 H 0.96998 * 119.99737 * 180.02562 * 20 19 17 45 45 H 1.09006 * 109.67968 * 189.74069 * 25 16 15 46 46 H 1.08997 * 109.68275 * 69.19339 * 25 16 15 47 47 H 1.08996 * 109.51511 * 172.22618 * 26 25 16 48 48 H 1.08996 * 109.51230 * 292.33043 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.1814 2.1266 -1.0365 5 7 2.6290 3.2826 -0.6973 6 6 2.7733 3.3313 0.6272 7 6 3.2701 4.4996 1.4391 8 6 2.3793 2.1086 1.1038 9 6 2.3553 1.6665 2.5080 10 8 1.4101 1.9502 3.2186 11 7 3.3808 0.9473 3.0056 12 6 3.3072 0.4121 4.3674 13 6 4.5905 -0.3592 4.6821 14 6 4.8141 -1.4353 3.6178 15 6 4.4672 -1.0197 6.0600 16 7 5.7738 -1.5942 6.4179 17 6 5.8813 -2.8926 6.8399 18 1 6.7580 -3.4712 6.5889 19 6 4.8633 -3.4649 7.5903 20 7 3.9040 -2.7098 8.0823 21 14 4.8548 -5.3067 7.9017 22 1 5.6030 -5.6011 9.1502 23 1 3.4537 -5.7787 8.0414 24 1 5.5008 -6.0046 6.7612 25 6 6.9616 -0.7326 6.3083 26 6 6.9635 -0.0861 4.9184 27 8 5.6999 0.5425 4.6900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8899 31 1 1.8934 -0.5140 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.3531 4.4354 1.5432 34 1 3.0080 5.4299 0.9351 35 1 2.8083 4.4787 2.4261 36 1 4.1675 0.7841 2.4622 37 1 2.4516 -0.2582 4.4486 38 1 3.1937 1.2336 5.0749 39 1 5.7275 -1.9855 3.8437 40 1 3.9680 -2.1223 3.6123 41 1 4.9062 -0.9645 2.6390 42 1 4.1792 -0.2735 6.8004 43 1 3.7163 -1.8090 6.0229 44 1 3.1929 -3.1098 8.6070 45 1 7.8630 -1.3322 6.4356 46 1 6.9247 0.0425 7.0738 47 1 7.7562 0.6600 4.8650 48 1 7.1323 -0.8515 4.1611 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107994254.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:00 Heat of formation + Delta-G solvation = 17.926002 kcal Electronic energy + Delta-G solvation = -30685.026409 eV Core-core repulsion = 26584.331278 eV Total energy + Delta-G solvation = -4100.695132 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.41934 -41.16881 -40.17929 -36.73909 -36.59122 -35.99282 -33.96559 -33.22398 -33.08391 -31.90759 -29.59007 -29.10531 -28.05911 -27.35859 -25.79513 -24.99480 -24.26848 -22.80368 -22.25564 -21.55734 -20.35409 -19.29471 -18.88864 -17.86153 -17.68125 -17.38678 -16.85606 -16.78772 -16.30071 -16.12273 -15.70701 -15.56023 -15.33656 -15.19236 -14.78451 -14.68904 -14.51257 -14.42196 -13.96709 -13.71500 -13.54358 -13.45361 -13.18952 -13.14059 -13.03026 -12.91119 -12.77592 -12.58187 -12.54856 -12.43718 -12.15912 -12.03440 -11.96690 -11.89335 -11.52390 -11.20892 -11.09406 -10.71317 -10.52460 -10.34267 -10.30116 -8.60092 -7.89316 -5.44488 0.10475 0.75617 1.23938 1.37925 1.46729 1.48754 1.57205 1.91649 2.47865 2.78261 3.13916 3.26816 3.39378 3.50366 3.55864 3.79820 3.82279 3.91997 4.01676 4.09650 4.12813 4.23032 4.42828 4.46639 4.54081 4.57541 4.58529 4.62995 4.70724 4.73160 4.76155 4.78025 4.90652 4.95513 5.03338 5.05766 5.10793 5.16753 5.20570 5.21580 5.34499 5.36707 5.54688 5.63419 6.20282 6.33672 6.38553 6.82795 7.10278 7.23032 7.75818 8.33871 9.15734 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016132 B = 0.003057 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.264882 B = 9156.459324 C = 9979.466966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.094 3.906 3 N -0.256 5.256 4 N -0.074 5.074 5 N -0.294 5.294 6 C 0.025 3.975 7 C -0.074 4.074 8 C -0.073 4.073 9 C 0.604 3.396 10 O -0.550 6.550 11 N -0.685 5.685 12 C 0.147 3.853 13 C 0.092 3.908 14 C -0.155 4.155 15 C 0.173 3.827 16 N -0.606 5.606 17 C -0.264 4.264 18 H 0.068 0.932 19 C -0.040 4.040 20 N -0.933 5.933 21 Si 0.965 3.035 22 H -0.288 1.288 23 H -0.293 1.293 24 H -0.266 1.266 25 C 0.102 3.898 26 C 0.054 3.946 27 O -0.385 6.385 28 H 0.067 0.933 29 H 0.115 0.885 30 H 0.047 0.953 31 H 0.140 0.860 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.415 0.585 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.074 0.926 42 H -0.004 1.004 43 H 0.061 0.939 44 H 0.251 0.749 45 H 0.069 0.931 46 H 0.011 0.989 47 H 0.115 0.885 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.767 5.620 -16.413 17.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.025 4.025 3 N -0.055 5.055 4 N -0.053 5.053 5 N -0.158 5.158 6 C -0.115 4.115 7 C -0.133 4.133 8 C -0.207 4.207 9 C 0.386 3.614 10 O -0.426 6.426 11 N -0.337 5.337 12 C 0.023 3.977 13 C 0.051 3.949 14 C -0.212 4.212 15 C 0.046 3.954 16 N -0.330 5.330 17 C -0.394 4.394 18 H 0.085 0.915 19 C -0.236 4.236 20 N -0.577 5.577 21 Si 0.793 3.207 22 H -0.215 1.215 23 H -0.220 1.220 24 H -0.191 1.191 25 C -0.023 4.023 26 C -0.024 4.024 27 O -0.305 6.305 28 H 0.086 0.914 29 H 0.133 0.867 30 H 0.066 0.934 31 H 0.158 0.842 32 H 0.133 0.867 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.253 0.747 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.014 0.986 43 H 0.079 0.921 44 H 0.060 0.940 45 H 0.087 0.913 46 H 0.029 0.971 47 H 0.133 0.867 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.710 5.953 -17.362 18.434 hybrid contribution 0.120 -1.409 1.835 2.316 sum -1.590 4.544 -15.528 16.257 Atomic orbital electron populations 1.22158 0.92008 1.05584 1.02665 1.22701 0.97396 0.74395 1.07982 1.48135 1.40364 1.14079 1.02881 1.78087 1.16811 0.98263 1.12145 1.74809 1.16764 1.11691 1.12550 1.22616 1.02136 0.95767 0.91002 1.20302 1.02467 0.92949 0.97540 1.21764 1.13522 0.95436 0.90021 1.16745 0.82662 0.77865 0.84123 1.90866 1.35932 1.55810 1.59996 1.45814 1.19696 1.52074 1.16149 1.21238 0.96305 0.97789 0.82345 1.22233 0.86141 0.89746 0.96824 1.22132 1.03250 0.98320 0.97524 1.20966 0.88688 0.95307 0.90438 1.44139 1.02365 1.09387 1.77110 1.19394 1.05403 0.87988 1.26656 0.91467 1.25955 0.98909 1.02033 0.96734 1.70132 1.14713 1.35425 1.37459 0.85328 0.76547 0.80666 0.78189 1.21465 1.21963 1.19053 1.21809 0.90986 0.93540 0.95957 1.23087 0.85350 0.98061 0.95881 1.87842 1.15296 1.34585 1.92757 0.91393 0.86696 0.93427 0.84230 0.86706 0.88340 0.88722 0.90653 0.74686 0.89511 0.91544 0.92130 0.91743 0.90733 0.98604 0.92077 0.93966 0.91265 0.97105 0.86710 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 71.98 0.74 -1.46 16 2 C 0.09 1.29 6.99 86.38 0.60 1.89 16 3 N -0.26 -5.51 3.39 -335.42 -1.14 -6.65 16 4 N -0.07 -1.88 13.14 37.02 0.49 -1.39 16 5 N -0.29 -7.99 12.35 -47.88 -0.59 -8.58 16 6 C 0.03 0.62 7.30 42.04 0.31 0.93 16 7 C -0.07 -1.40 10.28 71.24 0.73 -0.66 16 8 C -0.07 -1.77 6.74 40.41 0.27 -1.50 16 9 C 0.60 15.94 6.83 86.61 0.59 16.53 16 10 O -0.55 -18.57 17.11 -4.08 -0.07 -18.63 16 11 N -0.69 -16.30 5.19 -466.56 -2.42 -18.72 16 12 C 0.15 4.33 4.86 86.38 0.42 4.75 16 13 C 0.09 2.99 0.78 -10.70 -0.01 2.98 16 14 C -0.15 -4.32 7.86 71.98 0.57 -3.75 16 15 C 0.17 7.65 4.04 86.35 0.35 8.00 16 16 N -0.61 -28.16 2.53 -697.56 -1.76 -29.93 16 17 C -0.26 -13.49 9.59 84.03 0.81 -12.69 16 18 H 0.07 3.33 7.85 -2.91 -0.02 3.30 16 19 C -0.04 -2.09 5.03 84.86 0.43 -1.67 16 20 N -0.93 -52.57 11.38 21.65 0.25 -52.33 16 21 Si 0.96 42.21 29.57 68.60 2.03 44.24 16 22 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 25 C 0.10 3.93 6.73 86.35 0.58 4.52 16 26 C 0.05 1.59 6.60 72.08 0.48 2.07 16 27 O -0.39 -12.37 10.17 -148.98 -1.52 -13.88 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.14 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.11 1.38 7.75 -2.39 -0.02 1.37 16 33 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 1.49 8.02 -2.39 -0.02 1.47 16 36 H 0.42 8.42 6.99 -92.71 -0.65 7.77 16 37 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.06 1.92 6.11 -2.39 -0.01 1.91 16 40 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.07 1.56 6.59 -2.39 -0.02 1.55 16 42 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 43 H 0.06 3.01 6.56 -2.39 -0.02 2.99 16 44 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 45 H 0.07 2.51 7.96 -2.38 -0.02 2.49 16 46 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 48 H 0.06 1.68 6.26 -2.39 -0.01 1.67 16 Total: -1.00 -69.04 390.11 2.45 -66.58 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.33 Total: 19.35 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: 6.86 Total: 19.94 kcal Atomic # 7 Polarization: -112.42 SS G_CDS: -5.18 Total: -117.60 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -1.59 Total: -32.52 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -69.04 2.45 -66.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107994254.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.510 kcal (2) G-P(sol) polarization free energy of solvation -69.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds