Wall clock time and date at job start Tue Mar 31 2020 20:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47410 * 2 1 4 4 C 1.35310 * 125.87077 * 124.99758 * 3 2 1 5 5 C 1.35344 * 106.17799 * 180.02562 * 4 3 2 6 6 C 1.50707 * 126.75322 * 179.97438 * 5 4 3 7 7 C 1.50707 * 109.46727 * 125.00680 * 6 5 4 8 8 O 1.21282 * 120.00217 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99501 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99716 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47269 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.51074 * 60.10061 * 11 10 9 13 13 C 1.53290 * 109.51494 * 180.25274 * 11 10 9 14 14 N 1.47232 * 108.40798 * 172.23175 * 13 11 10 15 15 C 1.36930 * 121.03328 * 129.46021 * 14 13 11 16 16 H 1.08002 * 120.00530 * 206.18598 * 15 14 13 17 17 C 1.38816 * 119.99608 * 26.18827 * 15 14 13 18 18 N 1.31615 * 120.00526 * 16.88476 * 17 15 14 19 19 Si 1.86806 * 119.99896 * 196.88547 * 17 15 14 20 20 H 1.48493 * 109.47161 * 89.99376 * 19 17 15 21 21 H 1.48497 * 109.47448 * 210.00216 * 19 17 15 22 22 H 1.48503 * 109.46954 * 330.00010 * 19 17 15 23 23 C 1.47154 * 117.98230 * 309.48797 * 14 13 11 24 24 C 1.53298 * 108.41825 * 50.51870 * 23 14 13 25 25 O 1.42959 * 109.51371 * 300.00367 * 11 10 9 26 26 N 1.33772 * 106.49724 * 0.26912 * 5 4 3 27 27 N 1.28636 * 108.88255 * 359.56006 * 26 5 4 28 28 H 1.08998 * 109.47122 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46602 * 299.99475 * 1 2 3 30 30 H 1.09000 * 109.47014 * 59.99539 * 1 2 3 31 31 H 1.09003 * 109.46820 * 240.00021 * 2 1 3 32 32 H 1.08999 * 109.47468 * 120.00727 * 2 1 3 33 33 H 1.08004 * 126.90903 * 359.97438 * 4 3 2 34 34 H 1.08999 * 109.46570 * 5.01053 * 6 5 4 35 35 H 1.08999 * 109.47410 * 245.00754 * 6 5 4 36 36 H 0.97000 * 120.00195 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.46877 * 59.99845 * 10 9 7 38 38 H 1.08999 * 109.47195 * 299.99813 * 10 9 7 39 39 H 1.08996 * 109.47525 * 299.90181 * 12 11 10 40 40 H 1.09004 * 109.47010 * 59.89918 * 12 11 10 41 41 H 1.09003 * 109.47551 * 179.89847 * 12 11 10 42 42 H 1.09001 * 109.68414 * 291.94993 * 13 11 10 43 43 H 1.09001 * 109.68139 * 52.50357 * 13 11 10 44 44 H 0.97002 * 120.00383 * 180.02562 * 18 17 15 45 45 H 1.08997 * 109.68310 * 290.77188 * 23 14 13 46 46 H 1.09005 * 109.67869 * 170.25970 * 23 14 13 47 47 H 1.09001 * 109.51044 * 67.59999 * 24 23 14 48 48 H 1.09000 * 109.51036 * 187.70217 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8756 1.9190 0.8982 5 6 3.0534 3.2077 0.5249 6 6 3.9219 4.2328 1.2077 7 6 4.8933 4.8118 0.2115 8 8 4.8812 4.4300 -0.9396 9 7 5.7755 5.7537 0.5999 10 6 6.7202 6.3162 -0.3683 11 6 7.6019 7.3569 0.3248 12 6 8.3779 6.6923 1.4636 13 6 8.5865 7.9507 -0.6890 14 7 9.2911 9.0743 -0.0496 15 6 10.6574 9.1596 -0.0795 16 1 11.1822 9.6955 0.6975 17 6 11.3680 8.5571 -1.1086 18 7 10.7494 8.1983 -2.2135 19 14 13.2024 8.2556 -0.9253 20 1 13.4262 6.9177 -0.3212 21 1 13.8490 8.3102 -2.2610 22 1 13.7903 9.2994 -0.0477 23 6 8.4824 10.1031 0.6234 24 6 7.5028 9.4045 1.5733 25 8 6.7818 8.4024 0.8523 26 7 2.3014 3.3946 -0.5655 27 7 1.7053 2.2918 -0.8541 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.3266 1.4204 1.7435 34 1 4.4734 3.7587 2.0196 35 1 3.2961 5.0293 1.6101 36 1 5.7849 6.0593 1.5205 37 1 6.1689 6.7904 -1.1804 38 1 7.3458 5.5194 -0.7706 39 1 7.6766 6.2741 2.1856 40 1 9.0029 5.8953 1.0606 41 1 9.0072 7.4338 1.9558 42 1 9.3067 7.1899 -0.9902 43 1 8.0424 8.3084 -1.5631 44 1 11.2459 7.7770 -2.9325 45 1 7.9278 10.6776 -0.1185 46 1 9.1331 10.7682 1.1912 47 1 8.0560 8.9390 2.3890 48 1 6.8039 10.1364 1.9784 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108090996.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:04 Heat of formation + Delta-G solvation = 45.606906 kcal Electronic energy + Delta-G solvation = -29465.252947 eV Core-core repulsion = 25365.758149 eV Total energy + Delta-G solvation = -4099.494798 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.36755 -39.65844 -38.66927 -35.80619 -34.82988 -34.27161 -32.85213 -31.62637 -31.23613 -31.10052 -28.53075 -27.91521 -26.30419 -25.27164 -24.96681 -23.21199 -22.15485 -21.64742 -20.99352 -20.04808 -18.67509 -17.69507 -17.10637 -16.92926 -16.40240 -15.92255 -15.55602 -15.30570 -14.99932 -14.79364 -14.74292 -14.32812 -14.00584 -13.86521 -13.60315 -13.38899 -13.15798 -13.03147 -12.90063 -12.74224 -12.55160 -12.17277 -12.08396 -11.76903 -11.59886 -11.55654 -11.17582 -10.99871 -10.82472 -10.80102 -10.66172 -10.28789 -10.23163 -10.16346 -9.97275 -9.73122 -9.51741 -9.24154 -9.00715 -8.70454 -8.52915 -6.73008 -5.83176 -3.26735 1.45117 2.12078 2.45629 2.90408 3.34145 3.41147 3.43042 3.48803 3.97754 4.20946 4.28601 4.32836 4.44497 4.56147 4.60269 4.81236 5.02145 5.05720 5.11294 5.18396 5.21108 5.35560 5.36608 5.51691 5.52932 5.55625 5.70781 5.73711 5.93448 5.96311 5.98035 6.07873 6.14324 6.18352 6.36070 6.41666 6.49150 6.61784 6.73934 6.80717 6.84643 7.09646 7.49640 7.71604 7.78698 7.91245 8.34013 8.46484 8.51257 9.11803 9.75024 10.32508 11.24658 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021994 B = 0.002166 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.750489 B =12924.073735 C =13582.168210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.112 3.888 3 N -0.296 5.296 4 C -0.049 4.049 5 C -0.002 4.002 6 C -0.054 4.054 7 C 0.510 3.490 8 O -0.527 6.527 9 N -0.719 5.719 10 C 0.142 3.858 11 C 0.079 3.921 12 C -0.161 4.161 13 C 0.159 3.841 14 N -0.591 5.591 15 C -0.254 4.254 16 H 0.068 0.932 17 C 0.003 3.997 18 N -0.901 5.901 19 Si 0.903 3.097 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.109 3.891 24 C 0.046 3.954 25 O -0.383 6.383 26 N -0.237 5.237 27 N -0.086 5.086 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.189 0.811 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.401 0.599 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.042 0.958 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.030 0.970 44 H 0.256 0.744 45 H 0.026 0.974 46 H 0.061 0.939 47 H 0.048 0.952 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.733 -15.270 12.656 25.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.008 4.008 3 N -0.089 5.089 4 C -0.200 4.200 5 C -0.141 4.141 6 C -0.096 4.096 7 C 0.295 3.705 8 O -0.402 6.402 9 N -0.372 5.372 10 C 0.018 3.982 11 C 0.038 3.962 12 C -0.219 4.219 13 C 0.032 3.968 14 N -0.314 5.314 15 C -0.383 4.383 16 H 0.086 0.914 17 C -0.196 4.196 18 N -0.545 5.545 19 Si 0.733 3.267 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.018 4.018 24 C -0.032 4.032 25 O -0.303 6.303 26 N -0.104 5.104 27 N -0.066 5.066 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.206 0.794 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.236 0.764 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.114 0.886 43 H 0.048 0.952 44 H 0.066 0.934 45 H 0.043 0.957 46 H 0.079 0.921 47 H 0.066 0.934 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.672 -15.300 10.345 25.562 hybrid contribution 1.948 -0.394 1.464 2.468 sum -15.725 -15.694 11.809 25.160 Atomic orbital electron populations 1.22080 0.92709 1.03626 1.04103 1.22067 0.96900 0.76688 1.05195 1.47420 1.30834 1.11996 1.18688 1.23274 1.00997 0.95436 1.00282 1.21236 1.02213 0.93936 0.96746 1.19883 0.95532 0.97065 0.97112 1.20264 0.81272 0.79823 0.89188 1.90758 1.69981 1.60134 1.19353 1.45925 1.36102 1.40962 1.14184 1.21317 0.90656 0.94836 0.91420 1.22540 0.91276 0.86970 0.95449 1.22200 1.00013 1.01319 0.98326 1.21310 0.92945 0.91671 0.90842 1.44013 1.02281 1.20833 1.64293 1.19164 0.80985 1.33061 1.05116 0.91399 1.25047 0.97971 1.02008 0.94569 1.70015 1.35426 1.44543 1.04495 0.86276 0.85183 0.78266 0.76963 1.21404 1.21702 1.20449 1.21599 0.93441 0.91970 0.94760 1.23027 0.95297 0.90455 0.94399 1.87820 1.34372 1.35496 1.72580 1.75144 1.07579 1.15570 1.12077 1.78304 1.20963 0.92777 1.14552 0.89949 0.91760 0.90572 0.88327 0.87758 0.79396 0.87344 0.87182 0.76438 0.90923 0.90274 0.93888 0.91971 0.90889 0.88588 0.95235 0.93419 0.95658 0.92102 0.93424 0.90205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 10.04 37.16 0.37 -0.35 16 2 C 0.11 0.55 7.17 -4.04 -0.03 0.52 16 3 N -0.30 -2.92 3.44 -61.26 -0.21 -3.13 16 4 C -0.05 -0.45 11.49 -17.05 -0.20 -0.65 16 5 C 0.00 -0.03 6.00 -82.78 -0.50 -0.53 16 6 C -0.05 -0.55 6.28 -29.03 -0.18 -0.73 16 7 C 0.51 7.62 7.82 -10.98 -0.09 7.53 16 8 O -0.53 -10.48 15.61 5.56 0.09 -10.39 16 9 N -0.72 -10.23 5.15 -60.29 -0.31 -10.54 16 10 C 0.14 2.48 4.82 -4.04 -0.02 2.46 16 11 C 0.08 1.46 0.76 -90.47 -0.07 1.39 16 12 C -0.16 -2.70 7.92 37.16 0.29 -2.40 16 13 C 0.16 3.73 4.12 -3.49 -0.01 3.71 16 14 N -0.59 -14.38 2.57 -171.76 -0.44 -14.82 16 15 C -0.25 -6.75 9.65 -15.06 -0.15 -6.89 16 16 H 0.07 1.77 7.88 -52.49 -0.41 1.35 16 17 C 0.00 0.08 4.95 -17.43 -0.09 0.00 16 18 N -0.90 -25.83 11.14 55.49 0.62 -25.21 16 19 Si 0.90 21.32 29.59 -169.99 -5.03 16.29 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 C 0.11 2.23 6.73 -3.53 -0.02 2.21 16 24 C 0.05 0.79 6.60 37.31 0.25 1.04 16 25 O -0.38 -7.02 9.97 -35.23 -0.35 -7.37 16 26 N -0.24 -3.84 11.84 33.29 0.39 -3.45 16 27 N -0.09 -1.23 12.91 60.35 0.78 -0.45 16 28 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.47 8.12 -51.93 -0.42 0.05 16 31 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.10 0.18 8.07 -51.93 -0.42 -0.24 16 33 H 0.19 0.84 8.06 -52.48 -0.42 0.42 16 34 H 0.11 0.68 8.12 -51.93 -0.42 0.26 16 35 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.40 4.73 7.20 -40.82 -0.29 4.44 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.04 0.58 6.87 -51.93 -0.36 0.23 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.07 1.34 6.12 -51.93 -0.32 1.02 16 42 H 0.10 2.49 6.14 -51.93 -0.32 2.17 16 43 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 47 H 0.05 0.78 6.25 -51.93 -0.32 0.46 16 48 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 388.41 15.07 5.85 5.85 Total: -1.00 -36.67 388.41 -6.53 -43.20 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -7.49 Total: 2.72 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -0.43 Total: 7.29 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 0.83 Total: -57.60 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.26 Total: -17.76 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.67 -6.53 -43.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108090996.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.810 kcal (2) G-P(sol) polarization free energy of solvation -36.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds