Wall clock time and date at job start Tue Mar 31 2020 20:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47410 * 2 1 4 4 C 1.35310 * 125.87077 * 124.99758 * 3 2 1 5 5 C 1.35344 * 106.17799 * 180.02562 * 4 3 2 6 6 C 1.50707 * 126.75322 * 179.97438 * 5 4 3 7 7 C 1.50707 * 109.46727 * 125.00680 * 6 5 4 8 8 O 1.21282 * 120.00217 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99501 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99716 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47269 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.51074 * 60.10061 * 11 10 9 13 13 C 1.53290 * 109.51494 * 180.25274 * 11 10 9 14 14 N 1.47232 * 108.40798 * 172.23175 * 13 11 10 15 15 C 1.36930 * 121.03328 * 129.46021 * 14 13 11 16 16 H 1.08002 * 120.00530 * 206.18598 * 15 14 13 17 17 C 1.38816 * 119.99608 * 26.18827 * 15 14 13 18 18 N 1.31615 * 120.00526 * 16.88476 * 17 15 14 19 19 Si 1.86806 * 119.99896 * 196.88547 * 17 15 14 20 20 H 1.48493 * 109.47161 * 89.99376 * 19 17 15 21 21 H 1.48497 * 109.47448 * 210.00216 * 19 17 15 22 22 H 1.48503 * 109.46954 * 330.00010 * 19 17 15 23 23 C 1.47154 * 117.98230 * 309.48797 * 14 13 11 24 24 C 1.53298 * 108.41825 * 50.51870 * 23 14 13 25 25 O 1.42959 * 109.51371 * 300.00367 * 11 10 9 26 26 N 1.33772 * 106.49724 * 0.26912 * 5 4 3 27 27 N 1.28636 * 108.88255 * 359.56006 * 26 5 4 28 28 H 1.08998 * 109.47122 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46602 * 299.99475 * 1 2 3 30 30 H 1.09000 * 109.47014 * 59.99539 * 1 2 3 31 31 H 1.09003 * 109.46820 * 240.00021 * 2 1 3 32 32 H 1.08999 * 109.47468 * 120.00727 * 2 1 3 33 33 H 1.08004 * 126.90903 * 359.97438 * 4 3 2 34 34 H 1.08999 * 109.46570 * 5.01053 * 6 5 4 35 35 H 1.08999 * 109.47410 * 245.00754 * 6 5 4 36 36 H 0.97000 * 120.00195 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.46877 * 59.99845 * 10 9 7 38 38 H 1.08999 * 109.47195 * 299.99813 * 10 9 7 39 39 H 1.08996 * 109.47525 * 299.90181 * 12 11 10 40 40 H 1.09004 * 109.47010 * 59.89918 * 12 11 10 41 41 H 1.09003 * 109.47551 * 179.89847 * 12 11 10 42 42 H 1.09001 * 109.68414 * 291.94993 * 13 11 10 43 43 H 1.09001 * 109.68139 * 52.50357 * 13 11 10 44 44 H 0.97002 * 120.00383 * 180.02562 * 18 17 15 45 45 H 1.08997 * 109.68310 * 290.77188 * 23 14 13 46 46 H 1.09005 * 109.67869 * 170.25970 * 23 14 13 47 47 H 1.09001 * 109.51044 * 67.59999 * 24 23 14 48 48 H 1.09000 * 109.51036 * 187.70217 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8756 1.9190 0.8982 5 6 3.0534 3.2077 0.5249 6 6 3.9219 4.2328 1.2077 7 6 4.8933 4.8118 0.2115 8 8 4.8812 4.4300 -0.9396 9 7 5.7755 5.7537 0.5999 10 6 6.7202 6.3162 -0.3683 11 6 7.6019 7.3569 0.3248 12 6 8.3779 6.6923 1.4636 13 6 8.5865 7.9507 -0.6890 14 7 9.2911 9.0743 -0.0496 15 6 10.6574 9.1596 -0.0795 16 1 11.1822 9.6955 0.6975 17 6 11.3680 8.5571 -1.1086 18 7 10.7494 8.1983 -2.2135 19 14 13.2024 8.2556 -0.9253 20 1 13.4262 6.9177 -0.3212 21 1 13.8490 8.3102 -2.2610 22 1 13.7903 9.2994 -0.0477 23 6 8.4824 10.1031 0.6234 24 6 7.5028 9.4045 1.5733 25 8 6.7818 8.4024 0.8523 26 7 2.3014 3.3946 -0.5655 27 7 1.7053 2.2918 -0.8541 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.3266 1.4204 1.7435 34 1 4.4734 3.7587 2.0196 35 1 3.2961 5.0293 1.6101 36 1 5.7849 6.0593 1.5205 37 1 6.1689 6.7904 -1.1804 38 1 7.3458 5.5194 -0.7706 39 1 7.6766 6.2741 2.1856 40 1 9.0029 5.8953 1.0606 41 1 9.0072 7.4338 1.9558 42 1 9.3067 7.1899 -0.9902 43 1 8.0424 8.3084 -1.5631 44 1 11.2459 7.7770 -2.9325 45 1 7.9278 10.6776 -0.1185 46 1 9.1331 10.7682 1.1912 47 1 8.0560 8.9390 2.3890 48 1 6.8039 10.1364 1.9784 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108090996.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:03 Heat of formation + Delta-G solvation = 17.303562 kcal Electronic energy + Delta-G solvation = -29466.480272 eV Core-core repulsion = 25365.758149 eV Total energy + Delta-G solvation = -4100.722123 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.15652 -41.04548 -40.07828 -36.58199 -36.34664 -35.83005 -33.77916 -33.21459 -32.93669 -31.68696 -29.62869 -29.37007 -27.96673 -26.80644 -25.52590 -24.96749 -23.21119 -22.71733 -22.17230 -21.13367 -20.24603 -18.93597 -18.43523 -17.95112 -17.41207 -17.23506 -16.87795 -16.72621 -16.25124 -16.01562 -15.69253 -15.56100 -15.35108 -15.19109 -15.05516 -14.63105 -14.52106 -14.28990 -14.07112 -13.56935 -13.50657 -13.22655 -13.13668 -12.90435 -12.89275 -12.77036 -12.62367 -12.49189 -12.43278 -12.28738 -12.11736 -11.92799 -11.82180 -11.61615 -11.13603 -10.95496 -10.88941 -10.71789 -10.48114 -10.09805 -9.99893 -8.71226 -7.88497 -5.35736 0.73320 1.46679 1.47616 1.50369 1.56853 1.62946 1.77170 2.33090 2.50141 2.82915 3.25970 3.37015 3.52755 3.71031 3.92767 3.95457 3.99817 4.05369 4.09007 4.15375 4.26591 4.32529 4.45437 4.49614 4.50012 4.59364 4.62731 4.68643 4.74759 4.76507 4.79164 4.84349 5.01154 5.05250 5.07771 5.15367 5.17003 5.23450 5.28874 5.40034 5.47773 5.55490 5.62459 5.79691 6.30278 6.40676 6.68653 7.07365 7.39863 7.62653 7.77153 8.31560 9.17029 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021994 B = 0.002166 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.750489 B =12924.073735 C =13582.168210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.101 3.899 3 N -0.289 5.289 4 C -0.025 4.025 5 C -0.035 4.035 6 C -0.042 4.042 7 C 0.506 3.494 8 O -0.584 6.584 9 N -0.705 5.705 10 C 0.152 3.848 11 C 0.096 3.904 12 C -0.151 4.151 13 C 0.166 3.834 14 N -0.606 5.606 15 C -0.257 4.257 16 H 0.076 0.924 17 C -0.053 4.053 18 N -0.938 5.938 19 Si 0.968 3.032 20 H -0.283 1.283 21 H -0.300 1.300 22 H -0.265 1.265 23 C 0.100 3.900 24 C 0.053 3.947 25 O -0.385 6.385 26 N -0.298 5.298 27 N -0.131 5.131 28 H 0.110 0.890 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.103 0.897 32 H 0.148 0.852 33 H 0.243 0.757 34 H 0.160 0.840 35 H 0.130 0.870 36 H 0.417 0.583 37 H 0.043 0.957 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.066 0.934 43 H -0.013 1.013 44 H 0.249 0.751 45 H 0.009 0.991 46 H 0.073 0.927 47 H 0.064 0.936 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.965 -16.956 17.194 29.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.018 4.018 3 N -0.083 5.083 4 C -0.177 4.177 5 C -0.175 4.175 6 C -0.083 4.083 7 C 0.294 3.706 8 O -0.463 6.463 9 N -0.358 5.358 10 C 0.027 3.973 11 C 0.055 3.945 12 C -0.209 4.209 13 C 0.039 3.961 14 N -0.330 5.330 15 C -0.387 4.387 16 H 0.093 0.907 17 C -0.248 4.248 18 N -0.585 5.585 19 Si 0.797 3.203 20 H -0.209 1.209 21 H -0.227 1.227 22 H -0.190 1.190 23 C -0.025 4.025 24 C -0.024 4.024 25 O -0.304 6.304 26 N -0.163 5.163 27 N -0.110 5.110 28 H 0.128 0.872 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.166 0.834 33 H 0.259 0.741 34 H 0.178 0.822 35 H 0.148 0.852 36 H 0.255 0.745 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.005 0.995 44 H 0.058 0.942 45 H 0.027 0.973 46 H 0.091 0.909 47 H 0.083 0.917 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -17.948 -16.969 14.936 28.865 hybrid contribution 1.974 0.146 0.054 1.980 sum -15.975 -16.823 14.991 27.621 Atomic orbital electron populations 1.22055 0.92575 1.04912 1.02533 1.22571 0.97119 0.74558 1.07535 1.47888 1.29989 1.12852 1.17598 1.24063 0.99062 0.94221 1.00375 1.21804 1.02921 0.96120 0.96703 1.20008 0.94464 0.97469 0.96328 1.21215 0.81161 0.78892 0.89359 1.90744 1.71478 1.61911 1.22211 1.45726 1.35256 1.40649 1.14169 1.20919 0.90735 0.94198 0.91486 1.22155 0.90424 0.87127 0.94842 1.22103 1.00302 1.00582 0.97895 1.21077 0.92840 0.90952 0.91211 1.44269 1.02234 1.22142 1.64389 1.19535 0.82294 1.32087 1.04760 0.90662 1.25834 1.02090 1.02539 0.94366 1.70200 1.36854 1.46051 1.05346 0.85246 0.80255 0.78432 0.76412 1.20924 1.22733 1.18998 1.21842 0.93997 0.91717 0.94967 1.23108 0.95374 0.90567 0.93354 1.87831 1.34318 1.35643 1.72622 1.75060 1.09526 1.17248 1.14470 1.78202 1.22623 0.93552 1.16581 0.87171 0.92135 0.93311 0.87912 0.83446 0.74066 0.82193 0.85244 0.74472 0.93875 0.91452 0.89673 0.92786 0.92011 0.91593 0.99512 0.94163 0.97310 0.90887 0.91749 0.86440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 10.04 71.98 0.72 -0.44 16 2 C 0.10 0.72 7.17 86.38 0.62 1.34 16 3 N -0.29 -5.23 3.44 -347.74 -1.20 -6.42 16 4 C -0.03 -0.38 11.49 83.49 0.96 0.58 16 5 C -0.04 -0.83 6.00 41.60 0.25 -0.58 16 6 C -0.04 -0.72 6.28 29.11 0.18 -0.54 16 7 C 0.51 14.61 7.82 87.66 0.69 15.29 16 8 O -0.58 -23.97 15.61 -3.04 -0.05 -24.02 16 9 N -0.70 -18.94 5.15 -463.05 -2.39 -21.33 16 10 C 0.15 5.46 4.82 86.38 0.42 5.87 16 11 C 0.10 3.53 0.76 -10.70 -0.01 3.52 16 12 C -0.15 -4.75 7.92 71.98 0.57 -4.18 16 13 C 0.17 8.15 4.12 86.34 0.36 8.50 16 14 N -0.61 -29.97 2.57 -697.33 -1.79 -31.76 16 15 C -0.26 -13.75 9.65 84.04 0.81 -12.94 16 16 H 0.08 3.85 7.88 -2.91 -0.02 3.83 16 17 C -0.05 -2.94 4.95 84.86 0.42 -2.52 16 18 N -0.94 -56.27 11.14 21.65 0.24 -56.03 16 19 Si 0.97 44.41 29.59 68.60 2.03 46.44 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 22 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 23 C 0.10 4.04 6.73 86.35 0.58 4.62 16 24 C 0.05 1.67 6.60 72.08 0.48 2.14 16 25 O -0.38 -13.43 9.97 -148.98 -1.49 -14.91 16 26 N -0.30 -9.87 11.84 -48.60 -0.58 -10.45 16 27 N -0.13 -3.81 12.91 37.02 0.48 -3.33 16 28 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.05 0.63 8.12 -2.39 -0.02 0.61 16 31 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.15 -0.21 8.07 -2.39 -0.02 -0.22 16 33 H 0.24 0.62 8.06 -2.91 -0.02 0.60 16 34 H 0.16 1.06 8.12 -2.39 -0.02 1.04 16 35 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.42 8.34 7.20 -92.71 -0.67 7.67 16 37 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.08 1.95 6.87 -2.39 -0.02 1.93 16 40 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 41 H 0.06 2.11 6.12 -2.39 -0.01 2.09 16 42 H 0.07 3.62 6.14 -2.39 -0.01 3.61 16 43 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 44 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 45 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.07 2.73 7.96 -2.38 -0.02 2.71 16 47 H 0.06 1.86 6.25 -2.39 -0.01 1.84 16 48 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -88.81 388.41 2.61 -86.20 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.30 Total: 14.92 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: 7.04 Total: 20.68 kcal Atomic # 7 Polarization: -124.08 SS G_CDS: -5.23 Total: -129.32 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -1.53 Total: -38.93 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -88.81 2.61 -86.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108090996.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.506 kcal (2) G-P(sol) polarization free energy of solvation -88.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds