Wall clock time and date at job start Tue Mar 31 2020 20:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46510 * 109.47144 * 2 1 4 4 C 1.35311 * 125.86776 * 124.99717 * 3 2 1 5 5 C 1.35346 * 106.17096 * 180.02562 * 4 3 2 6 6 C 1.50705 * 126.74801 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.46690 * 124.99988 * 6 5 4 8 8 O 1.21283 * 120.00424 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99849 * 179.72666 * 7 6 5 10 10 C 1.46502 * 120.00457 * 180.27799 * 9 7 6 11 11 C 1.52996 * 109.47371 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.51351 * 305.10041 * 11 10 9 13 13 C 1.53292 * 109.51206 * 184.99780 * 11 10 9 14 14 N 1.47148 * 108.38569 * 187.77542 * 13 11 10 15 15 C 1.36942 * 120.98298 * 230.51352 * 14 13 11 16 16 H 1.08001 * 120.00196 * 153.32628 * 15 14 13 17 17 C 1.38811 * 119.99628 * 333.32562 * 15 14 13 18 18 N 1.31617 * 120.00369 * 343.54852 * 17 15 14 19 19 Si 1.86806 * 119.99584 * 163.54946 * 17 15 14 20 20 H 1.48499 * 109.47055 * 89.99865 * 19 17 15 21 21 H 1.48500 * 109.47050 * 210.00096 * 19 17 15 22 22 H 1.48497 * 109.47291 * 329.99726 * 19 17 15 23 23 C 1.47151 * 118.03585 * 50.53784 * 14 13 11 24 24 C 1.53299 * 108.38215 * 309.46172 * 23 14 13 25 25 O 1.42961 * 109.51094 * 65.25301 * 11 10 9 26 26 N 1.33761 * 106.50088 * 0.26079 * 5 4 3 27 27 N 1.28638 * 108.88376 * 359.56455 * 26 5 4 28 28 H 1.08992 * 109.47207 * 300.00317 * 1 2 3 29 29 H 1.09007 * 109.46623 * 60.00197 * 1 2 3 30 30 H 1.08996 * 109.46702 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47912 * 239.99861 * 2 1 3 32 32 H 1.09003 * 109.46980 * 119.99456 * 2 1 3 33 33 H 1.07999 * 126.91474 * 0.05817 * 4 3 2 34 34 H 1.09000 * 109.47246 * 5.00263 * 6 5 4 35 35 H 1.08991 * 109.47110 * 244.99804 * 6 5 4 36 36 H 0.97007 * 120.00178 * 0.27127 * 9 7 6 37 37 H 1.09002 * 109.46607 * 299.99613 * 10 9 7 38 38 H 1.08998 * 109.47121 * 59.99310 * 10 9 7 39 39 H 1.08995 * 109.46922 * 59.99964 * 12 11 10 40 40 H 1.09004 * 109.47050 * 180.02562 * 12 11 10 41 41 H 1.08994 * 109.47027 * 299.99928 * 12 11 10 42 42 H 1.09002 * 109.68189 * 307.49924 * 13 11 10 43 43 H 1.08999 * 109.68320 * 68.01295 * 13 11 10 44 44 H 0.96998 * 119.99791 * 180.02562 * 18 17 15 45 45 H 1.08995 * 109.68589 * 69.18816 * 23 14 13 46 46 H 1.08997 * 109.68083 * 189.74391 * 23 14 13 47 47 H 1.08998 * 109.50969 * 172.22660 * 24 23 14 48 48 H 1.08993 * 109.51165 * 292.32810 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8755 1.9191 0.8983 5 6 3.0532 3.2079 0.5249 6 6 3.9217 4.2329 1.2077 7 6 4.8931 4.8118 0.2116 8 8 4.8811 4.4301 -0.9395 9 7 5.7713 5.7582 0.5985 10 6 6.7117 6.3254 -0.3712 11 6 7.5893 7.3704 0.3206 12 6 6.7012 8.4176 0.9957 13 6 8.4872 8.0531 -0.7174 14 7 9.4469 8.9131 -0.0071 15 6 9.6226 10.2221 -0.3689 16 1 9.9617 10.9431 0.3603 17 6 9.3648 10.6223 -1.6728 18 7 9.2698 9.7243 -2.6303 19 14 9.1528 12.4356 -2.0685 20 1 10.4719 13.0248 -2.4119 21 1 8.2284 12.5859 -3.2210 22 1 8.5894 13.1375 -0.8874 23 6 10.2128 8.3248 1.1032 24 6 9.2307 7.6289 2.0526 25 8 8.4076 6.7316 1.3035 26 7 2.3014 3.3946 -0.5656 27 7 1.7053 2.2918 -0.8541 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.3275 1.4203 1.7428 34 1 4.4731 3.7590 2.0198 35 1 3.2958 5.0295 1.6099 36 1 5.7807 6.0639 1.5191 37 1 7.3406 5.5317 -0.7743 38 1 6.1569 6.7968 -1.1824 39 1 6.0643 7.9317 1.7348 40 1 7.3272 9.1620 1.4879 41 1 6.0796 8.9053 0.2449 42 1 9.0253 7.2980 -1.2907 43 1 7.8780 8.6583 -1.3886 44 1 9.0900 10.0040 -3.5415 45 1 10.9245 7.5971 0.7134 46 1 10.7461 9.1105 1.6382 47 1 9.7864 7.0704 2.8058 48 1 8.6053 8.3761 2.5411 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108090997.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:06 Heat of formation + Delta-G solvation = 46.338447 kcal Electronic energy + Delta-G solvation = -29465.110894 eV Core-core repulsion = 25365.647818 eV Total energy + Delta-G solvation = -4099.463076 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.36923 -39.66760 -38.67116 -35.80756 -34.84326 -34.28410 -32.85231 -31.60294 -31.22971 -31.10143 -28.53221 -27.91140 -26.32276 -25.27128 -24.96695 -23.21172 -22.16191 -21.65201 -20.97863 -20.04688 -18.67290 -17.70115 -17.10271 -16.93419 -16.41082 -15.89093 -15.56536 -15.35896 -15.04169 -14.80743 -14.61947 -14.30224 -14.08109 -13.88767 -13.61585 -13.36645 -13.12289 -13.04045 -12.92836 -12.66477 -12.58221 -12.19367 -12.07594 -11.75090 -11.60580 -11.55379 -11.16712 -10.99087 -10.82316 -10.79387 -10.64093 -10.29475 -10.24339 -10.16508 -9.96721 -9.73108 -9.51660 -9.25058 -8.99940 -8.71564 -8.52028 -6.71510 -5.82697 -3.26617 1.45120 2.11990 2.45415 2.90459 3.35083 3.42813 3.44259 3.48412 3.97683 4.21048 4.28466 4.32858 4.45446 4.56217 4.60325 4.80970 5.02117 5.05685 5.11535 5.18532 5.21203 5.35552 5.36457 5.51168 5.53942 5.55385 5.70441 5.73724 5.93250 5.95895 5.98192 6.08769 6.15811 6.17227 6.35267 6.41614 6.49802 6.62504 6.74295 6.80528 6.84730 7.09678 7.49884 7.72247 7.77704 7.91139 8.35108 8.46341 8.50712 9.12601 9.75712 10.33047 11.25236 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022572 B = 0.002169 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.161710 B =12906.407218 C =13638.873122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.113 3.887 3 N -0.295 5.295 4 C -0.049 4.049 5 C -0.003 4.003 6 C -0.054 4.054 7 C 0.510 3.490 8 O -0.526 6.526 9 N -0.720 5.720 10 C 0.141 3.859 11 C 0.079 3.921 12 C -0.161 4.161 13 C 0.160 3.840 14 N -0.590 5.590 15 C -0.255 4.255 16 H 0.067 0.933 17 C 0.004 3.996 18 N -0.901 5.901 19 Si 0.903 3.097 20 H -0.287 1.287 21 H -0.288 1.288 22 H -0.279 1.279 23 C 0.109 3.891 24 C 0.046 3.954 25 O -0.384 6.384 26 N -0.238 5.238 27 N -0.086 5.086 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.189 0.811 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.400 0.600 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.042 0.958 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.029 0.971 43 H 0.096 0.904 44 H 0.256 0.744 45 H 0.025 0.975 46 H 0.061 0.939 47 H 0.079 0.921 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.979 -18.117 13.388 26.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.008 4.008 3 N -0.089 5.089 4 C -0.200 4.200 5 C -0.141 4.141 6 C -0.096 4.096 7 C 0.295 3.705 8 O -0.402 6.402 9 N -0.373 5.373 10 C 0.018 3.982 11 C 0.038 3.962 12 C -0.219 4.219 13 C 0.033 3.967 14 N -0.314 5.314 15 C -0.384 4.384 16 H 0.085 0.915 17 C -0.195 4.195 18 N -0.545 5.545 19 Si 0.732 3.268 20 H -0.214 1.214 21 H -0.214 1.214 22 H -0.205 1.205 23 C -0.018 4.018 24 C -0.032 4.032 25 O -0.304 6.304 26 N -0.104 5.104 27 N -0.066 5.066 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.206 0.794 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.235 0.765 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.061 0.939 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.047 0.953 43 H 0.114 0.886 44 H 0.066 0.934 45 H 0.043 0.957 46 H 0.079 0.921 47 H 0.097 0.903 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.843 -18.246 11.103 26.009 hybrid contribution 0.715 0.896 1.108 1.594 sum -14.128 -17.350 12.210 25.489 Atomic orbital electron populations 1.22078 0.92713 1.03627 1.04102 1.22069 0.96895 0.76680 1.05197 1.47423 1.30836 1.12000 1.18674 1.23279 1.00962 0.95432 1.00285 1.21232 1.02208 0.93960 0.96747 1.19883 0.95488 0.97071 0.97156 1.20266 0.81328 0.79755 0.89194 1.90759 1.70072 1.59982 1.19378 1.45984 1.36324 1.40909 1.14105 1.21304 0.89979 0.95931 0.91028 1.22541 0.91014 0.91634 0.91049 1.22198 0.99486 0.99513 1.00695 1.21287 0.90870 0.93298 0.91240 1.43990 1.42209 1.08981 1.36219 1.19132 1.42539 0.83690 0.93069 0.91486 1.25056 1.01496 0.97608 0.95359 1.70006 1.52212 1.32221 1.00037 0.86303 0.77763 0.84996 0.77737 1.21366 1.21444 1.20473 1.21596 0.93229 0.96318 0.90608 1.23025 0.93184 0.93183 0.93795 1.87819 1.56745 1.34263 1.51533 1.75138 1.07599 1.15590 1.12073 1.78302 1.20970 0.92781 1.14543 0.91756 0.90581 0.89946 0.88325 0.87751 0.79381 0.87276 0.87251 0.76459 0.91030 0.90060 0.93906 0.90859 0.91838 0.95299 0.88586 0.93400 0.95719 0.92099 0.90268 0.93398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.72 10.04 37.16 0.37 -0.35 16 2 C 0.11 0.55 7.18 -4.04 -0.03 0.52 16 3 N -0.30 -2.92 3.44 -61.26 -0.21 -3.13 16 4 C -0.05 -0.45 11.49 -17.05 -0.20 -0.64 16 5 C 0.00 -0.03 6.00 -82.78 -0.50 -0.53 16 6 C -0.05 -0.55 6.28 -29.03 -0.18 -0.73 16 7 C 0.51 7.61 7.82 -10.98 -0.09 7.53 16 8 O -0.53 -10.47 15.61 5.55 0.09 -10.38 16 9 N -0.72 -10.24 5.19 -60.29 -0.31 -10.55 16 10 C 0.14 2.48 4.85 -4.04 -0.02 2.46 16 11 C 0.08 1.46 0.78 -90.47 -0.07 1.39 16 12 C -0.16 -2.74 7.86 37.16 0.29 -2.44 16 13 C 0.16 3.75 4.10 -3.54 -0.01 3.74 16 14 N -0.59 -14.39 2.57 -171.83 -0.44 -14.83 16 15 C -0.26 -6.80 9.65 -15.06 -0.15 -6.94 16 16 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 17 C 0.00 0.10 4.95 -17.43 -0.09 0.02 16 18 N -0.90 -25.91 11.14 55.49 0.62 -25.29 16 19 Si 0.90 21.42 29.58 -169.99 -5.03 16.39 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.11 2.23 6.73 -3.53 -0.02 2.20 16 24 C 0.05 0.78 6.60 37.31 0.25 1.03 16 25 O -0.38 -6.99 10.18 -35.23 -0.36 -7.35 16 26 N -0.24 -3.84 11.84 33.29 0.39 -3.45 16 27 N -0.09 -1.23 12.91 60.35 0.78 -0.45 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.47 8.12 -51.92 -0.42 0.05 16 30 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.10 0.18 8.07 -51.93 -0.42 -0.24 16 33 H 0.19 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.11 0.71 8.12 -51.93 -0.42 0.28 16 35 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.40 4.71 6.99 -40.82 -0.29 4.42 16 37 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.04 0.59 6.57 -51.93 -0.34 0.25 16 40 H 0.07 1.36 6.12 -51.93 -0.32 1.04 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.10 2.50 6.16 -51.93 -0.32 2.18 16 44 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 1.18 7.96 -51.93 -0.41 0.76 16 47 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.05 0.79 6.26 -51.93 -0.33 0.46 16 LS Contribution 388.15 15.07 5.85 5.85 Total: -1.00 -36.71 388.15 -6.53 -43.23 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -7.46 Total: 2.71 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -0.44 Total: 7.24 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: 0.83 Total: -57.69 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.27 Total: -17.73 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.71 -6.53 -43.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108090997.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.571 kcal (2) G-P(sol) polarization free energy of solvation -36.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds