Wall clock time and date at job start Tue Mar 31 2020 20:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46510 * 109.47144 * 2 1 4 4 C 1.35311 * 125.86776 * 124.99717 * 3 2 1 5 5 C 1.35346 * 106.17096 * 180.02562 * 4 3 2 6 6 C 1.50705 * 126.74801 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.46690 * 124.99988 * 6 5 4 8 8 O 1.21283 * 120.00424 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99849 * 179.72666 * 7 6 5 10 10 C 1.46502 * 120.00457 * 180.27799 * 9 7 6 11 11 C 1.52996 * 109.47371 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.51351 * 305.10041 * 11 10 9 13 13 C 1.53292 * 109.51206 * 184.99780 * 11 10 9 14 14 N 1.47148 * 108.38569 * 187.77542 * 13 11 10 15 15 C 1.36942 * 120.98298 * 230.51352 * 14 13 11 16 16 H 1.08001 * 120.00196 * 153.32628 * 15 14 13 17 17 C 1.38811 * 119.99628 * 333.32562 * 15 14 13 18 18 N 1.31617 * 120.00369 * 343.54852 * 17 15 14 19 19 Si 1.86806 * 119.99584 * 163.54946 * 17 15 14 20 20 H 1.48499 * 109.47055 * 89.99865 * 19 17 15 21 21 H 1.48500 * 109.47050 * 210.00096 * 19 17 15 22 22 H 1.48497 * 109.47291 * 329.99726 * 19 17 15 23 23 C 1.47151 * 118.03585 * 50.53784 * 14 13 11 24 24 C 1.53299 * 108.38215 * 309.46172 * 23 14 13 25 25 O 1.42961 * 109.51094 * 65.25301 * 11 10 9 26 26 N 1.33761 * 106.50088 * 0.26079 * 5 4 3 27 27 N 1.28638 * 108.88376 * 359.56455 * 26 5 4 28 28 H 1.08992 * 109.47207 * 300.00317 * 1 2 3 29 29 H 1.09007 * 109.46623 * 60.00197 * 1 2 3 30 30 H 1.08996 * 109.46702 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47912 * 239.99861 * 2 1 3 32 32 H 1.09003 * 109.46980 * 119.99456 * 2 1 3 33 33 H 1.07999 * 126.91474 * 0.05817 * 4 3 2 34 34 H 1.09000 * 109.47246 * 5.00263 * 6 5 4 35 35 H 1.08991 * 109.47110 * 244.99804 * 6 5 4 36 36 H 0.97007 * 120.00178 * 0.27127 * 9 7 6 37 37 H 1.09002 * 109.46607 * 299.99613 * 10 9 7 38 38 H 1.08998 * 109.47121 * 59.99310 * 10 9 7 39 39 H 1.08995 * 109.46922 * 59.99964 * 12 11 10 40 40 H 1.09004 * 109.47050 * 180.02562 * 12 11 10 41 41 H 1.08994 * 109.47027 * 299.99928 * 12 11 10 42 42 H 1.09002 * 109.68189 * 307.49924 * 13 11 10 43 43 H 1.08999 * 109.68320 * 68.01295 * 13 11 10 44 44 H 0.96998 * 119.99791 * 180.02562 * 18 17 15 45 45 H 1.08995 * 109.68589 * 69.18816 * 23 14 13 46 46 H 1.08997 * 109.68083 * 189.74391 * 23 14 13 47 47 H 1.08998 * 109.50969 * 172.22660 * 24 23 14 48 48 H 1.08993 * 109.51165 * 292.32810 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8755 1.9191 0.8983 5 6 3.0532 3.2079 0.5249 6 6 3.9217 4.2329 1.2077 7 6 4.8931 4.8118 0.2116 8 8 4.8811 4.4301 -0.9395 9 7 5.7713 5.7582 0.5985 10 6 6.7117 6.3254 -0.3712 11 6 7.5893 7.3704 0.3206 12 6 6.7012 8.4176 0.9957 13 6 8.4872 8.0531 -0.7174 14 7 9.4469 8.9131 -0.0071 15 6 9.6226 10.2221 -0.3689 16 1 9.9617 10.9431 0.3603 17 6 9.3648 10.6223 -1.6728 18 7 9.2698 9.7243 -2.6303 19 14 9.1528 12.4356 -2.0685 20 1 10.4719 13.0248 -2.4119 21 1 8.2284 12.5859 -3.2210 22 1 8.5894 13.1375 -0.8874 23 6 10.2128 8.3248 1.1032 24 6 9.2307 7.6289 2.0526 25 8 8.4076 6.7316 1.3035 26 7 2.3014 3.3946 -0.5656 27 7 1.7053 2.2918 -0.8541 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.3275 1.4203 1.7428 34 1 4.4731 3.7590 2.0198 35 1 3.2958 5.0295 1.6099 36 1 5.7807 6.0639 1.5191 37 1 7.3406 5.5317 -0.7743 38 1 6.1569 6.7968 -1.1824 39 1 6.0643 7.9317 1.7348 40 1 7.3272 9.1620 1.4879 41 1 6.0796 8.9053 0.2449 42 1 9.0253 7.2980 -1.2907 43 1 7.8780 8.6583 -1.3886 44 1 9.0900 10.0040 -3.5415 45 1 10.9245 7.5971 0.7134 46 1 10.7461 9.1105 1.6382 47 1 9.7864 7.0704 2.8058 48 1 8.6053 8.3761 2.5411 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108090997.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:05 Heat of formation + Delta-G solvation = 18.001430 kcal Electronic energy + Delta-G solvation = -29466.339679 eV Core-core repulsion = 25365.647818 eV Total energy + Delta-G solvation = -4100.691861 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.15805 -41.05514 -40.07954 -36.58830 -36.34639 -35.85113 -33.77570 -33.21553 -32.91545 -31.68782 -29.62999 -29.36952 -27.98917 -26.81932 -25.52561 -24.96564 -23.22121 -22.71023 -22.16612 -21.13193 -20.24941 -18.94031 -18.44119 -17.95339 -17.38794 -17.25522 -16.86357 -16.76690 -16.26188 -16.04050 -15.60578 -15.54789 -15.35612 -15.19208 -15.14191 -14.67764 -14.45231 -14.26787 -14.06045 -13.62853 -13.47772 -13.22298 -13.15633 -12.90492 -12.88937 -12.76152 -12.62751 -12.50824 -12.40503 -12.28860 -12.16809 -11.92007 -11.82826 -11.61768 -11.12564 -10.95883 -10.89559 -10.71923 -10.47836 -10.09962 -10.00629 -8.70080 -7.89010 -5.36258 0.73214 1.45232 1.47612 1.50160 1.56690 1.62875 1.77262 2.32776 2.49570 2.82547 3.26223 3.36728 3.52857 3.70636 3.92966 3.95125 3.99833 4.05074 4.08951 4.14060 4.26541 4.32481 4.45941 4.49519 4.50202 4.59041 4.61855 4.68236 4.74981 4.76554 4.79461 4.83377 5.00311 5.05226 5.07017 5.15635 5.17024 5.23697 5.28787 5.39336 5.47608 5.55441 5.62315 5.79563 6.30570 6.40414 6.67625 7.07572 7.39243 7.62517 7.77478 8.31403 9.16463 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022572 B = 0.002169 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.161710 B =12906.407218 C =13638.873122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.101 3.899 3 N -0.289 5.289 4 C -0.026 4.026 5 C -0.035 4.035 6 C -0.042 4.042 7 C 0.506 3.494 8 O -0.584 6.584 9 N -0.706 5.706 10 C 0.152 3.848 11 C 0.097 3.903 12 C -0.153 4.153 13 C 0.167 3.833 14 N -0.606 5.606 15 C -0.257 4.257 16 H 0.075 0.925 17 C -0.053 4.053 18 N -0.938 5.938 19 Si 0.967 3.033 20 H -0.286 1.286 21 H -0.297 1.297 22 H -0.265 1.265 23 C 0.100 3.900 24 C 0.053 3.947 25 O -0.383 6.383 26 N -0.297 5.297 27 N -0.131 5.131 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.148 0.852 33 H 0.243 0.757 34 H 0.159 0.841 35 H 0.132 0.868 36 H 0.417 0.583 37 H 0.050 0.950 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.051 0.949 42 H -0.011 1.011 43 H 0.063 0.937 44 H 0.249 0.751 45 H 0.011 0.989 46 H 0.072 0.928 47 H 0.120 0.880 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.577 -19.445 17.822 30.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.018 4.018 3 N -0.083 5.083 4 C -0.178 4.178 5 C -0.175 4.175 6 C -0.083 4.083 7 C 0.294 3.706 8 O -0.463 6.463 9 N -0.360 5.360 10 C 0.027 3.973 11 C 0.055 3.945 12 C -0.210 4.210 13 C 0.040 3.960 14 N -0.331 5.331 15 C -0.387 4.387 16 H 0.093 0.907 17 C -0.248 4.248 18 N -0.584 5.584 19 Si 0.794 3.206 20 H -0.212 1.212 21 H -0.223 1.223 22 H -0.190 1.190 23 C -0.025 4.025 24 C -0.024 4.024 25 O -0.302 6.302 26 N -0.162 5.162 27 N -0.110 5.110 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.128 0.872 31 H 0.121 0.879 32 H 0.166 0.834 33 H 0.259 0.741 34 H 0.176 0.824 35 H 0.150 0.850 36 H 0.255 0.745 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.007 0.993 43 H 0.082 0.918 44 H 0.058 0.942 45 H 0.029 0.971 46 H 0.091 0.909 47 H 0.137 0.863 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.459 -19.581 15.597 29.422 hybrid contribution 0.984 1.190 -0.225 1.561 sum -14.476 -18.390 15.372 28.000 Atomic orbital electron populations 1.22052 0.92574 1.04914 1.02532 1.22574 0.97118 0.74549 1.07539 1.47889 1.29989 1.12858 1.17579 1.24064 0.99065 0.94246 1.00388 1.21799 1.02910 0.96129 0.96709 1.20007 0.94439 0.97538 0.96299 1.21217 0.81227 0.78808 0.89363 1.90745 1.71585 1.61742 1.22235 1.45780 1.35396 1.40666 1.14109 1.20894 0.90100 0.94967 0.91372 1.22125 0.90443 0.91955 0.89940 1.22110 0.99209 0.98713 1.01003 1.21048 0.90830 0.91952 0.92191 1.44245 1.43182 1.08657 1.36975 1.19511 1.41101 0.85006 0.93109 0.90716 1.25831 1.02144 1.01387 0.95422 1.70187 1.54116 1.34058 1.00027 0.85290 0.77322 0.80489 0.77452 1.21247 1.22336 1.18951 1.21846 0.93929 0.96589 0.90132 1.23112 0.92519 0.93703 0.93103 1.87829 1.56761 1.34569 1.51050 1.75054 1.09519 1.17246 1.14429 1.78200 1.22629 0.93562 1.16564 0.92131 0.93319 0.87166 0.87905 0.83446 0.74111 0.82375 0.85034 0.74483 0.93149 0.92074 0.89763 0.91923 0.92998 0.99287 0.91838 0.94176 0.97127 0.90922 0.86260 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 10.04 71.98 0.72 -0.44 16 2 C 0.10 0.72 7.18 86.38 0.62 1.34 16 3 N -0.29 -5.23 3.44 -347.72 -1.20 -6.42 16 4 C -0.03 -0.38 11.49 83.49 0.96 0.58 16 5 C -0.04 -0.83 6.00 41.60 0.25 -0.58 16 6 C -0.04 -0.72 6.28 29.10 0.18 -0.54 16 7 C 0.51 14.59 7.82 87.66 0.69 15.28 16 8 O -0.58 -23.94 15.61 -3.04 -0.05 -23.99 16 9 N -0.71 -18.95 5.19 -463.05 -2.41 -21.35 16 10 C 0.15 5.46 4.85 86.38 0.42 5.88 16 11 C 0.10 3.57 0.78 -10.70 -0.01 3.56 16 12 C -0.15 -4.92 7.86 71.98 0.57 -4.36 16 13 C 0.17 8.18 4.10 86.35 0.35 8.54 16 14 N -0.61 -29.95 2.57 -697.56 -1.79 -31.74 16 15 C -0.26 -13.83 9.65 84.03 0.81 -13.02 16 16 H 0.08 3.83 7.88 -2.91 -0.02 3.81 16 17 C -0.05 -2.94 4.95 84.86 0.42 -2.52 16 18 N -0.94 -56.52 11.14 21.65 0.24 -56.28 16 19 Si 0.97 44.88 29.58 68.60 2.03 46.91 16 20 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 22 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 23 C 0.10 4.00 6.73 86.36 0.58 4.59 16 24 C 0.05 1.63 6.60 72.08 0.48 2.10 16 25 O -0.38 -13.11 10.18 -148.98 -1.52 -14.62 16 26 N -0.30 -9.82 11.84 -48.60 -0.58 -10.39 16 27 N -0.13 -3.80 12.91 37.02 0.48 -3.32 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.05 0.62 8.12 -2.38 -0.02 0.60 16 30 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.15 -0.20 8.07 -2.39 -0.02 -0.22 16 33 H 0.24 0.67 8.06 -2.91 -0.02 0.65 16 34 H 0.16 1.13 8.12 -2.39 -0.02 1.11 16 35 H 0.13 1.69 8.14 -2.39 -0.02 1.68 16 36 H 0.42 8.28 6.99 -92.70 -0.65 7.63 16 37 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.08 2.00 6.57 -2.39 -0.02 1.98 16 40 H 0.06 2.18 6.12 -2.38 -0.01 2.16 16 41 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 42 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 43 H 0.06 3.52 6.16 -2.39 -0.01 3.50 16 44 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 45 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 46 H 0.07 2.69 7.96 -2.39 -0.02 2.67 16 47 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 48 H 0.06 1.80 6.26 -2.39 -0.01 1.78 16 Total: -1.00 -88.68 388.15 2.58 -86.10 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.32 Total: 14.70 kcal Atomic # 6 Polarization: 13.37 SS G_CDS: 7.04 Total: 20.41 kcal Atomic # 7 Polarization: -124.26 SS G_CDS: -5.25 Total: -129.51 kcal Atomic # 8 Polarization: -37.05 SS G_CDS: -1.56 Total: -38.61 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -88.68 2.58 -86.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108090997.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.104 kcal (2) G-P(sol) polarization free energy of solvation -88.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds