Wall clock time and date at job start Tue Mar 31 2020 20:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47538 * 2 1 4 4 C 1.36734 * 127.13339 * 95.20752 * 3 2 1 5 5 C 1.50705 * 126.34986 * 0.03004 * 4 3 2 6 6 C 1.52996 * 109.46899 * 269.97183 * 5 4 3 7 7 C 1.50703 * 109.47139 * 179.97438 * 6 5 4 8 8 H 1.07999 * 119.99653 * 359.97438 * 7 6 5 9 9 C 1.37883 * 119.99864 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99864 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99707 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47137 * 0.02562 * 11 9 7 13 13 H 1.48493 * 109.47161 * 120.00119 * 11 9 7 14 14 H 1.48494 * 109.46903 * 239.99901 * 11 9 7 15 15 N 1.30297 * 107.30373 * 180.02562 * 4 3 2 16 16 N 1.28526 * 110.05456 * 0.02562 * 15 4 3 17 17 C 1.31213 * 109.86121 * 359.97438 * 16 15 4 18 18 N 1.38580 * 126.47559 * 179.97438 * 17 16 15 19 19 C 1.47010 * 111.00104 * 295.87706 * 18 17 16 20 20 C 1.53098 * 109.25887 * 182.39079 * 19 18 17 21 21 O 1.43007 * 109.25802 * 303.14758 * 20 19 18 22 22 C 1.43023 * 113.73791 * 58.67506 * 21 20 19 23 23 H 1.08997 * 109.50803 * 61.30312 * 22 21 20 24 24 C 1.50692 * 109.50622 * 181.39402 * 22 21 20 25 25 O 1.21287 * 120.00619 * 4.99687 * 24 22 21 26 26 N 1.34781 * 120.00063 * 184.99693 * 24 22 21 27 27 C 1.46499 * 120.00541 * 179.97438 * 26 24 22 28 28 C 1.47013 * 110.99881 * 59.50949 * 18 17 16 29 29 H 1.08998 * 109.47226 * 173.63186 * 1 2 3 30 30 H 1.09003 * 109.46858 * 293.63832 * 1 2 3 31 31 H 1.09000 * 109.46932 * 53.63413 * 1 2 3 32 32 H 1.08999 * 109.46764 * 240.00184 * 2 1 3 33 33 H 1.08997 * 109.46942 * 120.00756 * 2 1 3 34 34 H 1.09000 * 109.46675 * 29.96840 * 5 4 3 35 35 H 1.08998 * 109.47297 * 149.96602 * 5 4 3 36 36 H 1.08997 * 109.47119 * 300.00113 * 6 5 4 37 37 H 1.08998 * 109.47620 * 59.99617 * 6 5 4 38 38 H 0.97003 * 119.99397 * 179.97438 * 10 9 7 39 39 H 1.08997 * 109.50492 * 302.32707 * 19 18 17 40 40 H 1.09004 * 109.50790 * 62.40886 * 19 18 17 41 41 H 1.08996 * 109.50492 * 63.08611 * 20 19 18 42 42 H 1.09004 * 109.50473 * 183.21677 * 20 19 18 43 43 H 0.97003 * 119.99527 * 359.97438 * 26 24 22 44 44 H 1.09004 * 109.46601 * 299.99901 * 27 26 24 45 45 H 1.08993 * 109.47176 * 59.99707 * 27 26 24 46 46 H 1.08994 * 109.47299 * 180.02562 * 27 26 24 47 47 H 1.09000 * 109.51103 * 297.54555 * 28 18 17 48 48 H 1.09004 * 109.50287 * 57.67513 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.3869 2.1264 1.0856 5 6 2.3683 1.6785 2.5244 6 6 1.0078 2.0060 3.1429 7 6 0.9889 1.5575 4.5815 8 1 1.8601 1.0858 5.0115 9 6 -0.1406 1.7496 5.3487 10 7 -1.2015 2.3236 4.8248 11 14 -0.1637 1.1944 7.1321 12 1 1.1446 0.5825 7.4771 13 1 -0.4093 2.3652 8.0119 14 1 -1.2446 0.1948 7.3253 15 7 2.7572 3.2955 0.6455 16 7 2.6481 3.3395 -0.6344 17 6 2.1992 2.1911 -1.0832 18 7 1.9539 1.8631 -2.4071 19 6 0.8776 2.6945 -2.9653 20 6 0.5994 2.2596 -4.4066 21 8 1.8059 2.3527 -5.1686 22 6 2.8753 1.5549 -4.6535 23 1 2.5854 0.5043 -4.6684 24 6 4.1037 1.7501 -5.5042 25 8 4.0963 2.5654 -6.4021 26 7 5.2107 1.0187 -5.2673 27 6 6.4048 1.2080 -6.0946 28 6 3.1766 1.9827 -3.2147 29 1 -0.3633 -1.0213 -0.1140 30 1 -0.3633 0.4121 0.9415 31 1 -0.3633 0.6093 -0.8275 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.5399 0.6032 2.5724 35 1 3.1526 2.1965 3.0764 36 1 0.8361 3.0812 3.0948 37 1 0.2235 1.4879 2.5909 38 1 -1.9962 2.4584 5.3645 39 1 -0.0251 2.5709 -2.3670 40 1 1.1822 3.7410 -2.9525 41 1 0.2430 1.2295 -4.4135 42 1 -0.1581 2.9105 -4.8433 43 1 5.2167 0.3669 -4.5489 44 1 6.1637 0.9913 -7.1354 45 1 6.7470 2.2392 -6.0081 46 1 7.1918 0.5340 -5.7564 47 1 3.5183 3.0177 -3.2067 48 1 3.9520 1.3395 -2.7985 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121844643.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:46 Heat of formation + Delta-G solvation = 6.071898 kcal Electronic energy + Delta-G solvation = -30027.404054 eV Core-core repulsion = 25926.194890 eV Total energy + Delta-G solvation = -4101.209164 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.74935 -40.65390 -39.00865 -36.18268 -35.58186 -34.96028 -33.96620 -32.08561 -31.83304 -30.40045 -29.34381 -27.92918 -26.49170 -25.24863 -24.82289 -23.89223 -22.41110 -21.88247 -20.84088 -20.36529 -19.81598 -18.33559 -17.21024 -17.01056 -16.65153 -16.31969 -16.06921 -15.73078 -15.55835 -15.14188 -14.91315 -14.68656 -14.54878 -14.46079 -14.24060 -13.43977 -13.31267 -13.15887 -13.09346 -12.92686 -12.69267 -12.38555 -12.28362 -12.12972 -11.84245 -11.42279 -11.36459 -11.23071 -11.14880 -11.03126 -10.71539 -10.49187 -10.16875 -10.14023 -10.01491 -9.94620 -9.81215 -9.56581 -9.26903 -9.00383 -8.54239 -8.46426 -6.11093 -4.15207 1.92427 2.12309 2.39796 2.46215 3.14936 3.24692 3.33130 3.36118 3.45396 3.65164 4.27028 4.33482 4.36266 4.51605 4.61678 4.71233 4.80325 4.87092 4.90314 4.97878 5.02664 5.07579 5.11575 5.20816 5.25266 5.28998 5.38506 5.40535 5.44657 5.52080 5.67163 5.73223 5.77594 5.91634 6.18156 6.24852 6.27892 6.30721 6.37720 6.58442 6.60429 6.81613 7.01868 7.31963 7.50656 7.62305 7.80069 7.86224 8.23338 8.90956 9.04978 9.49742 10.99952 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023024 B = 0.002413 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.813729 B =11601.145116 C =12016.613893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.112 3.888 3 N -0.461 5.461 4 C 0.221 3.779 5 C -0.033 4.033 6 C 0.032 3.968 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.060 3.940 10 N -0.891 5.891 11 Si 0.894 3.106 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.284 1.284 15 N -0.297 5.297 16 N -0.307 5.307 17 C 0.312 3.688 18 N -0.453 5.453 19 C 0.024 3.976 20 C 0.067 3.933 21 O -0.353 6.353 22 C 0.081 3.919 23 H 0.095 0.905 24 C 0.522 3.478 25 O -0.512 6.512 26 N -0.733 5.733 27 C 0.089 3.911 28 C 0.042 3.958 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.025 0.975 37 H 0.017 0.983 38 H 0.261 0.739 39 H 0.093 0.907 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.112 0.888 43 H 0.403 0.597 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.078 0.922 47 H 0.070 0.930 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.339 -9.462 -19.950 23.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.011 4.011 3 N -0.153 5.153 4 C -0.046 4.046 5 C -0.073 4.073 6 C -0.006 4.006 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.142 4.142 10 N -0.530 5.530 11 Si 0.722 3.278 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.210 1.210 15 N -0.137 5.137 16 N -0.151 5.151 17 C -0.044 4.044 18 N -0.179 5.179 19 C -0.103 4.103 20 C -0.010 4.010 21 O -0.271 6.271 22 C 0.018 3.982 23 H 0.113 0.887 24 C 0.306 3.694 25 O -0.385 6.385 26 N -0.387 5.387 27 C -0.055 4.055 28 C -0.086 4.086 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.043 0.957 37 H 0.035 0.965 38 H 0.071 0.929 39 H 0.111 0.889 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.130 0.870 43 H 0.237 0.763 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.097 0.903 47 H 0.089 0.911 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.521 -7.763 -20.788 23.770 hybrid contribution -0.508 -1.346 1.636 2.178 sum 8.014 -9.109 -19.152 22.672 Atomic orbital electron populations 1.22164 0.93542 1.02941 1.04057 1.21800 0.96310 0.78711 1.04254 1.46430 1.48977 1.13771 1.06168 1.25700 0.97859 0.88520 0.92525 1.20492 1.03927 1.00282 0.82560 1.19101 0.88418 0.97932 0.95186 1.21163 0.99503 1.39788 0.95777 0.92245 1.25009 0.95591 0.95062 0.98575 1.69977 1.03659 1.42821 1.36544 0.86505 0.78047 0.78427 0.84852 1.19625 1.20910 1.21015 1.74091 1.20825 1.16799 1.01989 1.74499 1.18241 1.17658 1.04705 1.21939 1.06324 0.88565 0.87558 1.58717 1.08112 1.54666 0.96433 1.22941 0.94430 0.96634 0.96311 1.22814 0.86644 1.02261 0.89281 1.88133 1.20232 1.67319 1.51388 1.21915 0.88026 0.97020 0.91190 0.88717 1.20048 0.83792 0.80992 0.84538 1.90750 1.82741 1.33703 1.31308 1.45694 1.13433 1.42456 1.37143 1.21569 0.86052 1.02438 0.95450 1.22672 0.91494 1.03214 0.91248 0.90649 0.90416 0.92253 0.89097 0.88441 0.91125 0.89206 0.95687 0.96499 0.92888 0.88854 0.91527 0.91652 0.87002 0.76289 0.92018 0.91950 0.90329 0.91147 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 10.24 37.16 0.38 -1.66 16 2 C 0.11 1.32 6.79 -4.04 -0.03 1.29 16 3 N -0.46 -7.18 2.81 -114.08 -0.32 -7.50 16 4 C 0.22 4.17 7.32 -154.02 -1.13 3.05 16 5 C -0.03 -0.64 5.52 -27.88 -0.15 -0.79 16 6 C 0.03 0.77 4.95 -27.88 -0.14 0.64 16 7 C -0.52 -13.87 9.11 -34.44 -0.31 -14.18 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 10 N -0.89 -25.82 13.29 55.43 0.74 -25.09 16 11 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 N -0.30 -6.23 12.18 32.99 0.40 -5.83 16 16 N -0.31 -5.90 12.17 30.31 0.37 -5.53 16 17 C 0.31 4.90 6.47 -318.88 -2.06 2.84 16 18 N -0.45 -5.43 4.74 -174.21 -0.83 -6.26 16 19 C 0.02 0.28 5.58 -3.71 -0.02 0.26 16 20 C 0.07 0.61 7.01 37.21 0.26 0.87 16 21 O -0.35 -4.16 10.01 -55.06 -0.55 -4.71 16 22 C 0.08 0.78 3.22 -27.84 -0.09 0.69 16 23 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 24 C 0.52 5.58 7.18 -10.99 -0.08 5.50 16 25 O -0.51 -7.76 16.51 -14.28 -0.24 -8.00 16 26 N -0.73 -5.06 5.68 -67.08 -0.38 -5.44 16 27 C 0.09 0.52 10.70 59.85 0.64 1.16 16 28 C 0.04 0.45 4.79 -3.71 -0.02 0.43 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.21 6.84 -51.93 -0.36 0.86 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.10 1.09 7.11 -51.93 -0.37 0.72 16 34 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 35 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 36 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.02 0.42 6.84 -51.93 -0.36 0.07 16 38 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.40 1.61 8.71 -40.82 -0.36 1.26 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.09 0.81 8.02 -51.93 -0.42 0.39 16 LS Contribution 397.29 15.07 5.99 5.99 Total: -1.00 -35.96 397.29 -10.37 -46.33 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -7.68 Total: -1.27 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -2.85 Total: 1.62 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -0.02 Total: -55.65 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -0.79 Total: -12.71 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.96 -10.37 -46.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121844643.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.403 kcal (2) G-P(sol) polarization free energy of solvation -35.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds