Wall clock time and date at job start Tue Mar 31 2020 20:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47538 * 2 1 4 4 C 1.36734 * 127.13339 * 95.20752 * 3 2 1 5 5 C 1.50705 * 126.34986 * 0.03004 * 4 3 2 6 6 C 1.52996 * 109.46899 * 269.97183 * 5 4 3 7 7 C 1.50703 * 109.47139 * 179.97438 * 6 5 4 8 8 H 1.07999 * 119.99653 * 359.97438 * 7 6 5 9 9 C 1.37883 * 119.99864 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99864 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99707 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47137 * 0.02562 * 11 9 7 13 13 H 1.48493 * 109.47161 * 120.00119 * 11 9 7 14 14 H 1.48494 * 109.46903 * 239.99901 * 11 9 7 15 15 N 1.30297 * 107.30373 * 180.02562 * 4 3 2 16 16 N 1.28526 * 110.05456 * 0.02562 * 15 4 3 17 17 C 1.31213 * 109.86121 * 359.97438 * 16 15 4 18 18 N 1.38580 * 126.47559 * 179.97438 * 17 16 15 19 19 C 1.47010 * 111.00104 * 295.87706 * 18 17 16 20 20 C 1.53098 * 109.25887 * 182.39079 * 19 18 17 21 21 O 1.43007 * 109.25802 * 303.14758 * 20 19 18 22 22 C 1.43023 * 113.73791 * 58.67506 * 21 20 19 23 23 H 1.08997 * 109.50803 * 61.30312 * 22 21 20 24 24 C 1.50692 * 109.50622 * 181.39402 * 22 21 20 25 25 O 1.21287 * 120.00619 * 4.99687 * 24 22 21 26 26 N 1.34781 * 120.00063 * 184.99693 * 24 22 21 27 27 C 1.46499 * 120.00541 * 179.97438 * 26 24 22 28 28 C 1.47013 * 110.99881 * 59.50949 * 18 17 16 29 29 H 1.08998 * 109.47226 * 173.63186 * 1 2 3 30 30 H 1.09003 * 109.46858 * 293.63832 * 1 2 3 31 31 H 1.09000 * 109.46932 * 53.63413 * 1 2 3 32 32 H 1.08999 * 109.46764 * 240.00184 * 2 1 3 33 33 H 1.08997 * 109.46942 * 120.00756 * 2 1 3 34 34 H 1.09000 * 109.46675 * 29.96840 * 5 4 3 35 35 H 1.08998 * 109.47297 * 149.96602 * 5 4 3 36 36 H 1.08997 * 109.47119 * 300.00113 * 6 5 4 37 37 H 1.08998 * 109.47620 * 59.99617 * 6 5 4 38 38 H 0.97003 * 119.99397 * 179.97438 * 10 9 7 39 39 H 1.08997 * 109.50492 * 302.32707 * 19 18 17 40 40 H 1.09004 * 109.50790 * 62.40886 * 19 18 17 41 41 H 1.08996 * 109.50492 * 63.08611 * 20 19 18 42 42 H 1.09004 * 109.50473 * 183.21677 * 20 19 18 43 43 H 0.97003 * 119.99527 * 359.97438 * 26 24 22 44 44 H 1.09004 * 109.46601 * 299.99901 * 27 26 24 45 45 H 1.08993 * 109.47176 * 59.99707 * 27 26 24 46 46 H 1.08994 * 109.47299 * 180.02562 * 27 26 24 47 47 H 1.09000 * 109.51103 * 297.54555 * 28 18 17 48 48 H 1.09004 * 109.50287 * 57.67513 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.3869 2.1264 1.0856 5 6 2.3683 1.6785 2.5244 6 6 1.0078 2.0060 3.1429 7 6 0.9889 1.5575 4.5815 8 1 1.8601 1.0858 5.0115 9 6 -0.1406 1.7496 5.3487 10 7 -1.2015 2.3236 4.8248 11 14 -0.1637 1.1944 7.1321 12 1 1.1446 0.5825 7.4771 13 1 -0.4093 2.3652 8.0119 14 1 -1.2446 0.1948 7.3253 15 7 2.7572 3.2955 0.6455 16 7 2.6481 3.3395 -0.6344 17 6 2.1992 2.1911 -1.0832 18 7 1.9539 1.8631 -2.4071 19 6 0.8776 2.6945 -2.9653 20 6 0.5994 2.2596 -4.4066 21 8 1.8059 2.3527 -5.1686 22 6 2.8753 1.5549 -4.6535 23 1 2.5854 0.5043 -4.6684 24 6 4.1037 1.7501 -5.5042 25 8 4.0963 2.5654 -6.4021 26 7 5.2107 1.0187 -5.2673 27 6 6.4048 1.2080 -6.0946 28 6 3.1766 1.9827 -3.2147 29 1 -0.3633 -1.0213 -0.1140 30 1 -0.3633 0.4121 0.9415 31 1 -0.3633 0.6093 -0.8275 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.5399 0.6032 2.5724 35 1 3.1526 2.1965 3.0764 36 1 0.8361 3.0812 3.0948 37 1 0.2235 1.4879 2.5909 38 1 -1.9962 2.4584 5.3645 39 1 -0.0251 2.5709 -2.3670 40 1 1.1822 3.7410 -2.9525 41 1 0.2430 1.2295 -4.4135 42 1 -0.1581 2.9105 -4.8433 43 1 5.2167 0.3669 -4.5489 44 1 6.1637 0.9913 -7.1354 45 1 6.7470 2.2392 -6.0081 46 1 7.1918 0.5340 -5.7564 47 1 3.5183 3.0177 -3.2067 48 1 3.9520 1.3395 -2.7985 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121844643.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:45 Heat of formation + Delta-G solvation = -18.502595 kcal Electronic energy + Delta-G solvation = -30028.469684 eV Core-core repulsion = 25926.194890 eV Total energy + Delta-G solvation = -4102.274794 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.10023 -41.50177 -39.88054 -37.17849 -36.85546 -35.81198 -35.65708 -33.64889 -32.87507 -31.52664 -30.73021 -28.94182 -27.51210 -26.86936 -25.62664 -24.97655 -23.84423 -23.24283 -21.73470 -21.41287 -21.17146 -19.20883 -18.63248 -18.04651 -17.86218 -17.58494 -17.13022 -16.70390 -16.46497 -16.37979 -16.08319 -15.90513 -15.54905 -15.44126 -15.25692 -14.88531 -14.70905 -14.22128 -14.16208 -14.01625 -13.82919 -13.38952 -13.19905 -13.11310 -13.06578 -12.90822 -12.72040 -12.59496 -12.46893 -12.40048 -12.06627 -11.85414 -11.76965 -11.65823 -11.27595 -11.13044 -10.99829 -10.97892 -10.56652 -10.23268 -10.12248 -10.02256 -8.19886 -6.31484 0.62203 1.08644 1.42856 1.43953 1.45002 1.56988 1.69761 1.79138 2.41314 2.44404 2.93301 3.15013 3.39787 3.47067 3.64248 3.66162 3.73579 3.86579 3.96245 4.01973 4.08675 4.14318 4.19954 4.34481 4.37543 4.46066 4.52457 4.59339 4.61550 4.62665 4.68949 4.77339 4.81216 4.82006 4.94935 4.96133 5.13336 5.20227 5.29282 5.31462 5.44320 5.49682 5.62244 5.80449 5.87756 6.09863 6.17772 6.42836 6.84922 7.10837 7.38551 7.64452 8.92245 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023024 B = 0.002413 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.813729 B =11601.145116 C =12016.613893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.104 3.896 3 N -0.453 5.453 4 C 0.208 3.792 5 C -0.017 4.017 6 C 0.043 3.957 7 C -0.536 4.536 8 H 0.073 0.927 9 C 0.001 3.999 10 N -0.934 5.934 11 Si 0.965 3.035 12 H -0.256 1.256 13 H -0.286 1.286 14 H -0.278 1.278 15 N -0.336 5.336 16 N -0.347 5.347 17 C 0.334 3.666 18 N -0.436 5.436 19 C 0.023 3.977 20 C 0.074 3.926 21 O -0.380 6.380 22 C 0.088 3.912 23 H 0.133 0.867 24 C 0.518 3.482 25 O -0.566 6.566 26 N -0.715 5.715 27 C 0.083 3.917 28 C 0.046 3.954 29 H 0.108 0.892 30 H 0.033 0.967 31 H 0.057 0.943 32 H 0.130 0.870 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.088 0.912 36 H -0.022 1.022 37 H 0.002 0.998 38 H 0.262 0.738 39 H 0.093 0.907 40 H 0.039 0.961 41 H 0.093 0.907 42 H 0.127 0.873 43 H 0.421 0.579 44 H 0.056 0.944 45 H 0.046 0.954 46 H 0.115 0.885 47 H 0.038 0.962 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.128 -13.034 -20.280 25.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.017 4.017 3 N -0.145 5.145 4 C -0.061 4.061 5 C -0.057 4.057 6 C 0.005 3.995 7 C -0.574 4.574 8 H 0.091 0.909 9 C -0.197 4.197 10 N -0.574 5.574 11 Si 0.790 3.210 12 H -0.179 1.179 13 H -0.212 1.212 14 H -0.204 1.204 15 N -0.176 5.176 16 N -0.190 5.190 17 C -0.023 4.023 18 N -0.162 5.162 19 C -0.105 4.105 20 C -0.002 4.002 21 O -0.298 6.298 22 C 0.026 3.974 23 H 0.150 0.850 24 C 0.303 3.697 25 O -0.444 6.444 26 N -0.369 5.369 27 C -0.060 4.060 28 C -0.082 4.082 29 H 0.126 0.874 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.148 0.852 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.106 0.894 36 H -0.003 1.003 37 H 0.020 0.980 38 H 0.071 0.929 39 H 0.112 0.888 40 H 0.057 0.943 41 H 0.111 0.889 42 H 0.145 0.855 43 H 0.258 0.742 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.134 0.866 47 H 0.057 0.943 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 9.345 -11.394 -21.095 25.732 hybrid contribution -0.754 -0.243 1.647 1.828 sum 8.592 -11.637 -19.447 24.237 Atomic orbital electron populations 1.22110 0.93822 1.04580 1.01515 1.22229 0.95984 0.76755 1.06706 1.46602 1.48029 1.14893 1.05009 1.25425 0.98928 0.88742 0.92995 1.20195 1.00617 1.02067 0.82785 1.18862 0.91005 0.94592 0.95081 1.21620 0.99816 1.39225 0.96714 0.90900 1.25963 0.95240 0.95138 1.03328 1.70125 1.04468 1.44397 1.38415 0.85387 0.78789 0.77841 0.78966 1.17908 1.21212 1.20360 1.73982 1.22199 1.18255 1.03143 1.74423 1.20563 1.19853 1.04198 1.22293 1.03569 0.87534 0.88938 1.59006 1.08748 1.53813 0.94643 1.23008 0.94018 0.95213 0.98216 1.22938 0.86137 1.04169 0.86969 1.88120 1.21353 1.68232 1.52127 1.22009 0.87321 0.98533 0.89538 0.85000 1.20344 0.84815 0.80578 0.83988 1.90728 1.83702 1.36175 1.33786 1.45638 1.12605 1.41548 1.37108 1.21727 0.86391 1.02554 0.95322 1.22706 0.91364 1.02043 0.92114 0.87353 0.94774 0.92385 0.85165 0.87452 0.88090 0.89405 1.00339 0.97978 0.92880 0.88820 0.94266 0.88897 0.85525 0.74226 0.92572 0.93490 0.86615 0.94300 0.86827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 10.24 71.98 0.74 -2.87 16 2 C 0.10 2.14 6.79 86.38 0.59 2.72 16 3 N -0.45 -13.60 2.81 -514.85 -1.45 -15.05 16 4 C 0.21 7.91 7.32 137.64 1.01 8.92 16 5 C -0.02 -0.66 5.52 29.85 0.16 -0.49 16 6 C 0.04 2.15 4.95 29.85 0.15 2.30 16 7 C -0.54 -28.46 9.11 25.60 0.23 -28.22 16 8 H 0.07 3.60 7.74 -2.91 -0.02 3.57 16 9 C 0.00 0.07 5.46 84.66 0.46 0.53 16 10 N -0.93 -55.47 13.29 21.45 0.28 -55.19 16 11 Si 0.97 42.30 29.54 68.60 2.03 44.33 16 12 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 13 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 14 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 15 N -0.34 -14.56 12.18 -49.53 -0.60 -15.16 16 16 N -0.35 -13.67 12.17 -58.00 -0.71 -14.38 16 17 C 0.33 10.25 6.47 260.11 1.68 11.94 16 18 N -0.44 -9.69 4.74 -705.06 -3.34 -13.03 16 19 C 0.02 0.50 5.58 86.32 0.48 0.99 16 20 C 0.07 1.19 7.01 72.01 0.50 1.70 16 21 O -0.38 -8.41 10.01 -130.02 -1.30 -9.71 16 22 C 0.09 1.49 3.22 29.88 0.10 1.58 16 23 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 24 C 0.52 10.42 7.18 87.65 0.63 11.05 16 25 O -0.57 -17.32 16.51 15.91 0.26 -17.06 16 26 N -0.72 -8.24 5.68 -484.53 -2.75 -10.99 16 27 C 0.08 0.83 10.70 127.77 1.37 2.20 16 28 C 0.05 0.90 4.79 86.32 0.41 1.32 16 29 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.03 1.06 6.84 -2.39 -0.02 1.04 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.11 2.05 7.11 -2.39 -0.02 2.03 16 34 H 0.10 3.25 7.18 -2.39 -0.02 3.24 16 35 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 36 H -0.02 -1.29 8.14 -2.39 -0.02 -1.31 16 37 H 0.00 0.10 6.84 -2.39 -0.02 0.09 16 38 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 39 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.13 1.64 8.14 -2.38 -0.02 1.62 16 43 H 0.42 1.86 8.71 -92.71 -0.81 1.05 16 44 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.12 0.28 8.14 -2.39 -0.02 0.27 16 47 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.11 1.68 8.02 -2.38 -0.02 1.67 16 Total: -1.00 -83.55 397.29 1.10 -82.46 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.16 Total: 10.13 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 8.51 Total: 13.65 kcal Atomic # 7 Polarization: -115.23 SS G_CDS: -8.57 Total: -123.80 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -1.04 Total: -26.77 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -83.55 1.10 -82.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121844643.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.954 kcal (2) G-P(sol) polarization free energy of solvation -83.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds