Wall clock time and date at job start Tue Mar 31 2020 20:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46491 * 109.47508 * 2 1 4 4 C 1.36742 * 127.13860 * 269.03083 * 3 2 1 5 5 C 1.50699 * 126.34353 * 359.96246 * 4 3 2 6 6 C 1.53002 * 109.47073 * 270.28729 * 5 4 3 7 7 C 1.50699 * 109.47073 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00345 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00285 * 180.02562 * 7 6 5 10 10 N 1.31508 * 120.00523 * 180.02562 * 9 7 6 11 11 Si 1.86805 * 119.99576 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.46983 * 89.99834 * 11 9 7 13 13 H 1.48503 * 109.47127 * 209.99871 * 11 9 7 14 14 H 1.48498 * 109.47144 * 329.99825 * 11 9 7 15 15 N 1.30289 * 107.30835 * 180.22615 * 4 3 2 16 16 N 1.28528 * 110.05445 * 359.76831 * 15 4 3 17 17 C 1.31218 * 109.86257 * 0.02562 * 16 15 4 18 18 N 1.38576 * 126.47565 * 179.97438 * 17 16 15 19 19 C 1.47015 * 111.00155 * 61.71981 * 18 17 16 20 20 C 1.53094 * 109.25523 * 177.60537 * 19 18 17 21 21 O 1.43008 * 109.26004 * 56.85306 * 20 19 18 22 22 C 1.43016 * 113.73724 * 301.32481 * 21 20 19 23 23 H 1.09004 * 109.54199 * 298.71343 * 22 21 20 24 24 C 1.50706 * 109.50632 * 178.60619 * 22 21 20 25 25 O 1.21272 * 119.99860 * 355.21549 * 24 22 21 26 26 N 1.34779 * 119.99550 * 175.21511 * 24 22 21 27 27 C 1.46498 * 119.99575 * 180.27468 * 26 24 22 28 28 C 1.47008 * 111.00075 * 298.08269 * 18 17 16 29 29 H 1.09006 * 109.46768 * 62.06278 * 1 2 3 30 30 H 1.09000 * 109.47432 * 182.06710 * 1 2 3 31 31 H 1.09007 * 109.47121 * 302.07082 * 1 2 3 32 32 H 1.08993 * 109.46926 * 239.99571 * 2 1 3 33 33 H 1.09001 * 109.46531 * 119.99681 * 2 1 3 34 34 H 1.09007 * 109.47155 * 30.28946 * 5 4 3 35 35 H 1.08998 * 109.47037 * 150.28760 * 5 4 3 36 36 H 1.08997 * 109.47321 * 299.99978 * 6 5 4 37 37 H 1.08998 * 109.47163 * 60.00109 * 6 5 4 38 38 H 0.97001 * 120.00267 * 180.02562 * 10 9 7 39 39 H 1.08996 * 109.50631 * 297.54278 * 19 18 17 40 40 H 1.09002 * 109.50272 * 57.67019 * 19 18 17 41 41 H 1.09003 * 109.50076 * 176.78362 * 20 19 18 42 42 H 1.08997 * 109.51234 * 296.91041 * 20 19 18 43 43 H 0.96999 * 119.99847 * 0.02562 * 26 24 22 44 44 H 1.09004 * 109.46928 * 299.72306 * 27 26 24 45 45 H 1.08995 * 109.47464 * 59.72737 * 27 26 24 46 46 H 1.09002 * 109.47258 * 179.72713 * 27 26 24 47 47 H 1.09000 * 109.50533 * 62.45982 * 28 18 17 48 48 H 1.09004 * 109.51100 * 302.32884 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3110 2.1533 -1.0899 5 6 2.1920 1.7409 -2.5345 6 6 3.5093 1.1147 -2.9963 7 6 3.3901 0.7018 -4.4407 8 1 2.4669 0.8688 -4.9757 9 6 4.4592 0.1097 -5.0791 10 7 4.3553 -0.2502 -6.3397 11 14 6.0553 -0.1812 -4.1532 12 1 6.0176 -1.5191 -3.5099 13 1 7.1962 -0.1201 -5.1019 14 1 6.2211 0.8643 -3.1117 15 7 2.7172 3.3097 -0.6479 16 7 2.6967 3.3223 0.6371 17 6 2.2733 2.1648 1.0876 18 7 2.1190 1.8047 2.4169 19 6 1.1300 2.6639 3.0841 20 6 0.9471 2.1945 4.5298 21 8 2.2133 2.2095 5.1944 22 6 3.2002 1.3829 4.5715 23 1 2.8644 0.3459 4.5785 24 6 4.5001 1.4959 5.3257 25 8 4.6005 2.2780 6.2471 26 7 5.5510 0.7278 4.9761 27 6 6.8127 0.8334 5.7131 28 6 3.4060 1.8439 3.1262 29 1 -0.3633 0.4815 -0.9080 30 1 -0.3634 -1.0270 0.0371 31 1 -0.3634 0.5457 0.8709 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 1.3872 1.0132 -2.6395 35 1 1.9720 2.6165 -3.1453 36 1 4.3140 1.8424 -2.8914 37 1 3.7293 0.2392 -2.3855 38 1 5.1074 -0.6671 -6.7886 39 1 1.4813 3.6957 3.0780 40 1 0.1779 2.5997 2.5573 41 1 0.2577 2.8634 5.0450 42 1 0.5450 1.1815 4.5355 43 1 5.4707 0.1026 4.2389 44 1 7.1963 1.8505 5.6328 45 1 6.6421 0.5912 6.7621 46 1 7.5384 0.1371 5.2928 47 1 3.7936 2.8626 3.1208 48 1 4.1153 1.1813 2.6303 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121844646.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:49 Heat of formation + Delta-G solvation = 9.284804 kcal Electronic energy + Delta-G solvation = -30152.081444 eV Core-core repulsion = 26051.011602 eV Total energy + Delta-G solvation = -4101.069842 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.87158 -40.69953 -39.05523 -36.26657 -35.71507 -34.96645 -34.07743 -32.14463 -31.97348 -30.57356 -29.59097 -28.08268 -26.62152 -25.47874 -24.87570 -24.03356 -22.49503 -21.50510 -20.83123 -20.48212 -20.01405 -18.38267 -17.23784 -17.13155 -16.81318 -16.63662 -16.16669 -15.78589 -15.61375 -15.24580 -14.97507 -14.74179 -14.59244 -14.36627 -14.27856 -13.48109 -13.43767 -13.38328 -13.13560 -13.07209 -12.72660 -12.67059 -12.42781 -12.33677 -11.92138 -11.68563 -11.50597 -11.41651 -11.27290 -11.15819 -10.67941 -10.41027 -10.27476 -10.16583 -10.11457 -9.98765 -9.89151 -9.56201 -9.37158 -9.09803 -8.70543 -8.65748 -6.16328 -4.16255 1.79886 2.08620 2.31461 2.42852 3.02414 3.20230 3.30536 3.35100 3.36135 3.60106 4.21848 4.30209 4.34504 4.42506 4.55011 4.61090 4.73238 4.77591 4.85409 4.86280 4.91207 4.95177 5.10502 5.13160 5.17376 5.20934 5.27302 5.36043 5.36783 5.42282 5.48154 5.56854 5.65647 5.88333 5.91861 6.09454 6.12928 6.17376 6.20808 6.39514 6.54455 6.66981 7.01410 7.02260 7.17101 7.22834 7.61781 7.78948 8.37354 8.86732 8.92611 9.45036 10.96527 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012258 B = 0.003151 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.677328 B = 8884.399302 C =10334.148336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.105 3.895 3 N -0.461 5.461 4 C 0.216 3.784 5 C -0.024 4.024 6 C -0.003 4.003 7 C -0.524 4.524 8 H 0.076 0.924 9 C 0.072 3.928 10 N -0.898 5.898 11 Si 0.875 3.125 12 H -0.277 1.277 13 H -0.285 1.285 14 H -0.265 1.265 15 N -0.295 5.295 16 N -0.306 5.306 17 C 0.314 3.686 18 N -0.454 5.454 19 C 0.026 3.974 20 C 0.067 3.933 21 O -0.353 6.353 22 C 0.081 3.919 23 H 0.096 0.904 24 C 0.522 3.478 25 O -0.512 6.512 26 N -0.733 5.733 27 C 0.088 3.912 28 C 0.040 3.960 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.025 0.975 37 H 0.008 0.992 38 H 0.265 0.735 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.112 0.888 42 H 0.065 0.935 43 H 0.404 0.596 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.079 0.921 47 H 0.071 0.929 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.209 -3.450 23.149 23.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.018 4.018 3 N -0.154 5.154 4 C -0.051 4.051 5 C -0.064 4.064 6 C -0.042 4.042 7 C -0.562 4.562 8 H 0.094 0.906 9 C -0.130 4.130 10 N -0.536 5.536 11 Si 0.703 3.297 12 H -0.203 1.203 13 H -0.211 1.211 14 H -0.190 1.190 15 N -0.135 5.135 16 N -0.150 5.150 17 C -0.042 4.042 18 N -0.180 5.180 19 C -0.101 4.101 20 C -0.011 4.011 21 O -0.270 6.270 22 C 0.019 3.981 23 H 0.113 0.887 24 C 0.306 3.694 25 O -0.386 6.386 26 N -0.387 5.387 27 C -0.055 4.055 28 C -0.088 4.088 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.122 0.878 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.044 0.956 37 H 0.026 0.974 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.130 0.870 42 H 0.083 0.917 43 H 0.238 0.762 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.097 0.903 47 H 0.089 0.911 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.672 -1.913 23.885 24.413 hybrid contribution 0.630 -1.371 -0.312 1.541 sum -4.042 -3.284 23.573 24.142 Atomic orbital electron populations 1.22101 0.93886 1.03243 1.02965 1.21886 0.95796 0.78854 1.05257 1.46439 1.49385 1.13760 1.05782 1.25708 0.98812 0.87954 0.92619 1.20279 1.01675 1.02026 0.82402 1.19543 0.91995 0.95306 0.97321 1.20996 1.01223 1.40014 0.93979 0.90557 1.24959 0.98491 0.94870 0.94686 1.69890 1.31898 1.41428 1.10401 0.86841 0.83741 0.78932 0.80220 1.20331 1.21100 1.18989 1.74101 1.19398 1.18024 1.01948 1.74521 1.18537 1.17465 1.04524 1.21976 1.05926 0.88829 0.87465 1.58723 1.09784 1.53104 0.96399 1.22915 0.95862 0.96201 0.95164 1.22807 0.85340 1.02204 0.90706 1.88136 1.20477 1.67126 1.51275 1.21919 0.88912 0.96666 0.90608 0.88651 1.20020 0.84517 0.80660 0.84193 1.90744 1.82929 1.35898 1.29000 1.45703 1.12840 1.42995 1.37121 1.21580 0.84289 1.02702 0.96967 1.22711 0.90358 1.03417 0.92344 0.91655 0.90305 0.92130 0.87835 0.88626 0.90448 0.88552 0.95638 0.97354 0.92527 0.91495 0.89040 0.87043 0.91682 0.76212 0.91924 0.91986 0.90253 0.91099 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 10.24 37.16 0.38 -1.08 16 2 C 0.10 1.14 6.62 -4.05 -0.03 1.11 16 3 N -0.46 -6.74 2.81 -114.09 -0.32 -7.06 16 4 C 0.22 3.86 7.32 -154.02 -1.13 2.73 16 5 C -0.02 -0.44 5.35 -27.88 -0.15 -0.59 16 6 C 0.00 -0.07 4.02 -27.88 -0.11 -0.18 16 7 C -0.52 -14.00 9.66 -34.44 -0.33 -14.33 16 8 H 0.08 2.16 7.99 -52.49 -0.42 1.74 16 9 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 10 N -0.90 -26.56 13.96 55.43 0.77 -25.79 16 11 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 15 N -0.29 -5.89 12.18 32.99 0.40 -5.49 16 16 N -0.31 -5.61 12.19 30.32 0.37 -5.24 16 17 C 0.31 4.65 6.46 -318.87 -2.06 2.59 16 18 N -0.45 -5.10 4.74 -174.21 -0.83 -5.92 16 19 C 0.03 0.26 5.57 -3.71 -0.02 0.24 16 20 C 0.07 0.53 7.01 37.21 0.26 0.79 16 21 O -0.35 -3.97 10.01 -55.06 -0.55 -4.52 16 22 C 0.08 0.77 3.22 -27.83 -0.09 0.68 16 23 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 24 C 0.52 5.70 7.18 -10.98 -0.08 5.63 16 25 O -0.51 -7.82 16.51 -14.27 -0.24 -8.06 16 26 N -0.73 -5.52 5.68 -67.08 -0.38 -5.90 16 27 C 0.09 0.58 10.70 59.85 0.64 1.22 16 28 C 0.04 0.43 4.81 -3.71 -0.02 0.41 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 32 H 0.10 1.19 7.83 -51.93 -0.41 0.78 16 33 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.08 1.28 7.90 -51.93 -0.41 0.87 16 35 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 36 H 0.03 0.61 7.20 -51.93 -0.37 0.24 16 37 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.40 1.96 8.69 -40.82 -0.35 1.60 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 48 H 0.09 0.88 8.00 -51.93 -0.42 0.47 16 LS Contribution 397.39 15.07 5.99 5.99 Total: -1.00 -36.26 397.39 -10.14 -46.40 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -7.86 Total: -1.80 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -2.83 Total: 1.13 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.02 Total: -55.40 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -0.79 Total: -12.58 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.26 -10.14 -46.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121844646.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.682 kcal (2) G-P(sol) polarization free energy of solvation -36.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds