Wall clock time and date at job start Tue Mar 31 2020 20:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46491 * 109.47508 * 2 1 4 4 C 1.36742 * 127.13860 * 269.03083 * 3 2 1 5 5 C 1.50699 * 126.34353 * 359.96246 * 4 3 2 6 6 C 1.53002 * 109.47073 * 270.28729 * 5 4 3 7 7 C 1.50699 * 109.47073 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00345 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00285 * 180.02562 * 7 6 5 10 10 N 1.31508 * 120.00523 * 180.02562 * 9 7 6 11 11 Si 1.86805 * 119.99576 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.46983 * 89.99834 * 11 9 7 13 13 H 1.48503 * 109.47127 * 209.99871 * 11 9 7 14 14 H 1.48498 * 109.47144 * 329.99825 * 11 9 7 15 15 N 1.30289 * 107.30835 * 180.22615 * 4 3 2 16 16 N 1.28528 * 110.05445 * 359.76831 * 15 4 3 17 17 C 1.31218 * 109.86257 * 0.02562 * 16 15 4 18 18 N 1.38576 * 126.47565 * 179.97438 * 17 16 15 19 19 C 1.47015 * 111.00155 * 61.71981 * 18 17 16 20 20 C 1.53094 * 109.25523 * 177.60537 * 19 18 17 21 21 O 1.43008 * 109.26004 * 56.85306 * 20 19 18 22 22 C 1.43016 * 113.73724 * 301.32481 * 21 20 19 23 23 H 1.09004 * 109.54199 * 298.71343 * 22 21 20 24 24 C 1.50706 * 109.50632 * 178.60619 * 22 21 20 25 25 O 1.21272 * 119.99860 * 355.21549 * 24 22 21 26 26 N 1.34779 * 119.99550 * 175.21511 * 24 22 21 27 27 C 1.46498 * 119.99575 * 180.27468 * 26 24 22 28 28 C 1.47008 * 111.00075 * 298.08269 * 18 17 16 29 29 H 1.09006 * 109.46768 * 62.06278 * 1 2 3 30 30 H 1.09000 * 109.47432 * 182.06710 * 1 2 3 31 31 H 1.09007 * 109.47121 * 302.07082 * 1 2 3 32 32 H 1.08993 * 109.46926 * 239.99571 * 2 1 3 33 33 H 1.09001 * 109.46531 * 119.99681 * 2 1 3 34 34 H 1.09007 * 109.47155 * 30.28946 * 5 4 3 35 35 H 1.08998 * 109.47037 * 150.28760 * 5 4 3 36 36 H 1.08997 * 109.47321 * 299.99978 * 6 5 4 37 37 H 1.08998 * 109.47163 * 60.00109 * 6 5 4 38 38 H 0.97001 * 120.00267 * 180.02562 * 10 9 7 39 39 H 1.08996 * 109.50631 * 297.54278 * 19 18 17 40 40 H 1.09002 * 109.50272 * 57.67019 * 19 18 17 41 41 H 1.09003 * 109.50076 * 176.78362 * 20 19 18 42 42 H 1.08997 * 109.51234 * 296.91041 * 20 19 18 43 43 H 0.96999 * 119.99847 * 0.02562 * 26 24 22 44 44 H 1.09004 * 109.46928 * 299.72306 * 27 26 24 45 45 H 1.08995 * 109.47464 * 59.72737 * 27 26 24 46 46 H 1.09002 * 109.47258 * 179.72713 * 27 26 24 47 47 H 1.09000 * 109.50533 * 62.45982 * 28 18 17 48 48 H 1.09004 * 109.51100 * 302.32884 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3110 2.1533 -1.0899 5 6 2.1920 1.7409 -2.5345 6 6 3.5093 1.1147 -2.9963 7 6 3.3901 0.7018 -4.4407 8 1 2.4669 0.8688 -4.9757 9 6 4.4592 0.1097 -5.0791 10 7 4.3553 -0.2502 -6.3397 11 14 6.0553 -0.1812 -4.1532 12 1 6.0176 -1.5191 -3.5099 13 1 7.1962 -0.1201 -5.1019 14 1 6.2211 0.8643 -3.1117 15 7 2.7172 3.3097 -0.6479 16 7 2.6967 3.3223 0.6371 17 6 2.2733 2.1648 1.0876 18 7 2.1190 1.8047 2.4169 19 6 1.1300 2.6639 3.0841 20 6 0.9471 2.1945 4.5298 21 8 2.2133 2.2095 5.1944 22 6 3.2002 1.3829 4.5715 23 1 2.8644 0.3459 4.5785 24 6 4.5001 1.4959 5.3257 25 8 4.6005 2.2780 6.2471 26 7 5.5510 0.7278 4.9761 27 6 6.8127 0.8334 5.7131 28 6 3.4060 1.8439 3.1262 29 1 -0.3633 0.4815 -0.9080 30 1 -0.3634 -1.0270 0.0371 31 1 -0.3634 0.5457 0.8709 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 1.3872 1.0132 -2.6395 35 1 1.9720 2.6165 -3.1453 36 1 4.3140 1.8424 -2.8914 37 1 3.7293 0.2392 -2.3855 38 1 5.1074 -0.6671 -6.7886 39 1 1.4813 3.6957 3.0780 40 1 0.1779 2.5997 2.5573 41 1 0.2577 2.8634 5.0450 42 1 0.5450 1.1815 4.5355 43 1 5.4707 0.1026 4.2389 44 1 7.1963 1.8505 5.6328 45 1 6.6421 0.5912 6.7621 46 1 7.5384 0.1371 5.2928 47 1 3.7936 2.8626 3.1208 48 1 4.1153 1.1813 2.6303 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121844646.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:48 Heat of formation + Delta-G solvation = -15.648156 kcal Electronic energy + Delta-G solvation = -30153.162618 eV Core-core repulsion = 26051.011602 eV Total energy + Delta-G solvation = -4102.151016 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.13055 -41.51845 -39.89712 -37.19570 -36.86819 -35.84282 -35.68157 -33.84200 -32.88300 -31.52248 -30.94047 -29.04354 -27.65959 -26.91321 -25.63427 -24.98035 -23.58991 -23.01298 -21.74613 -21.50913 -21.24404 -19.23574 -18.98756 -18.09204 -17.87314 -17.60833 -17.16327 -16.73843 -16.40663 -16.34530 -16.07347 -15.88082 -15.57800 -15.45415 -15.23424 -14.99436 -14.84916 -14.52510 -14.17713 -14.04531 -13.85774 -13.53086 -13.22746 -13.16813 -13.11531 -12.96098 -12.72953 -12.57484 -12.39910 -12.17406 -12.11400 -11.97092 -11.84517 -11.59200 -11.42614 -11.15092 -11.02280 -10.97936 -10.77554 -10.26353 -10.11805 -10.08179 -8.29929 -6.34266 0.59539 1.06274 1.31689 1.37868 1.40121 1.47621 1.66854 1.77595 2.34225 2.41504 2.92321 3.05449 3.34376 3.43526 3.61735 3.64677 3.71848 3.83705 3.96602 4.01937 4.08695 4.14093 4.21499 4.34007 4.38893 4.42763 4.50254 4.51082 4.58582 4.60588 4.63669 4.73399 4.77825 4.83642 4.88925 4.91544 5.13609 5.20018 5.26799 5.27898 5.29933 5.40103 5.41300 5.60664 5.87819 6.08286 6.24195 6.39567 6.73215 7.07452 7.30554 7.61796 8.86069 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012258 B = 0.003151 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.677328 B = 8884.399302 C =10334.148336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.095 3.905 3 N -0.452 5.452 4 C 0.206 3.794 5 C -0.011 4.011 6 C 0.006 3.994 7 C -0.527 4.527 8 H 0.047 0.953 9 C 0.014 3.986 10 N -0.944 5.944 11 Si 0.940 3.060 12 H -0.257 1.257 13 H -0.286 1.286 14 H -0.262 1.262 15 N -0.331 5.331 16 N -0.345 5.345 17 C 0.336 3.664 18 N -0.437 5.437 19 C 0.025 3.975 20 C 0.071 3.929 21 O -0.381 6.381 22 C 0.090 3.910 23 H 0.132 0.868 24 C 0.517 3.483 25 O -0.565 6.565 26 N -0.717 5.717 27 C 0.083 3.917 28 C 0.043 3.957 29 H 0.049 0.951 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.123 0.877 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.008 0.992 37 H 0.023 0.977 38 H 0.267 0.733 39 H 0.041 0.959 40 H 0.103 0.897 41 H 0.129 0.871 42 H 0.092 0.908 43 H 0.420 0.580 44 H 0.047 0.953 45 H 0.057 0.943 46 H 0.113 0.887 47 H 0.039 0.961 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.487 -5.952 25.329 26.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.026 4.026 3 N -0.144 5.144 4 C -0.063 4.063 5 C -0.051 4.051 6 C -0.033 4.033 7 C -0.565 4.565 8 H 0.065 0.935 9 C -0.183 4.183 10 N -0.584 5.584 11 Si 0.764 3.236 12 H -0.181 1.181 13 H -0.211 1.211 14 H -0.186 1.186 15 N -0.172 5.172 16 N -0.189 5.189 17 C -0.021 4.021 18 N -0.164 5.164 19 C -0.102 4.102 20 C -0.005 4.005 21 O -0.299 6.299 22 C 0.028 3.972 23 H 0.149 0.851 24 C 0.302 3.698 25 O -0.443 6.443 26 N -0.371 5.371 27 C -0.060 4.060 28 C -0.085 4.085 29 H 0.068 0.932 30 H 0.124 0.876 31 H 0.083 0.917 32 H 0.117 0.883 33 H 0.141 0.859 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.026 0.974 37 H 0.041 0.959 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.122 0.878 41 H 0.147 0.853 42 H 0.110 0.890 43 H 0.257 0.743 44 H 0.065 0.935 45 H 0.076 0.924 46 H 0.131 0.869 47 H 0.057 0.943 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.957 -4.463 26.050 26.890 hybrid contribution 0.650 -0.594 -0.979 1.316 sum -4.308 -5.056 25.071 25.936 Atomic orbital electron populations 1.22081 0.92227 1.04857 1.02385 1.22294 0.97172 0.76710 1.06402 1.46608 1.48469 1.14753 1.04616 1.25307 0.99866 0.88282 0.92821 1.19989 1.00229 1.01854 0.83053 1.19369 0.93541 0.95430 0.94932 1.21296 1.00058 1.39176 0.95979 0.93490 1.25822 1.02199 0.94869 0.95456 1.70027 1.33181 1.43003 1.12228 0.85815 0.79171 0.79702 0.78910 1.18138 1.21142 1.18649 1.74002 1.20525 1.19569 1.03059 1.74457 1.20751 1.19687 1.03996 1.22297 1.03243 0.87816 0.88793 1.59008 1.10194 1.52513 0.94640 1.23017 0.95713 0.94732 0.96747 1.22992 0.84499 1.04169 0.88860 1.88123 1.21776 1.67871 1.52103 1.21959 0.88202 0.98113 0.88884 0.85068 1.20388 0.85550 0.80225 0.83656 1.90720 1.83843 1.38259 1.31484 1.45675 1.12315 1.42095 1.37021 1.21726 0.84401 1.02785 0.97119 1.22706 0.90236 1.02089 0.93460 0.93166 0.87631 0.91700 0.88285 0.85878 0.88445 0.89594 0.97367 0.95873 0.92375 0.94096 0.87834 0.85301 0.88962 0.74337 0.93453 0.92378 0.86868 0.94257 0.87512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 10.24 71.98 0.74 -1.53 16 2 C 0.09 1.73 6.62 86.38 0.57 2.30 16 3 N -0.45 -12.30 2.81 -514.88 -1.45 -13.75 16 4 C 0.21 7.21 7.32 137.64 1.01 8.22 16 5 C -0.01 -0.42 5.35 29.85 0.16 -0.26 16 6 C 0.01 0.26 4.02 29.85 0.12 0.38 16 7 C -0.53 -28.41 9.66 25.60 0.25 -28.16 16 8 H 0.05 2.74 7.99 -2.91 -0.02 2.71 16 9 C 0.01 0.80 5.47 84.66 0.46 1.27 16 10 N -0.94 -56.68 13.96 21.45 0.30 -56.38 16 11 Si 0.94 42.65 27.47 68.60 1.88 44.53 16 12 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 13 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 14 H -0.26 -11.67 6.54 99.48 0.65 -11.02 16 15 N -0.33 -13.33 12.18 -49.54 -0.60 -13.94 16 16 N -0.35 -12.62 12.19 -58.00 -0.71 -13.33 16 17 C 0.34 9.41 6.46 260.11 1.68 11.09 16 18 N -0.44 -8.74 4.74 -705.08 -3.34 -12.08 16 19 C 0.03 0.45 5.57 86.31 0.48 0.93 16 20 C 0.07 0.93 7.01 72.01 0.50 1.44 16 21 O -0.38 -7.85 10.01 -130.02 -1.30 -9.16 16 22 C 0.09 1.50 3.22 29.88 0.10 1.59 16 23 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 24 C 0.52 10.63 7.18 87.66 0.63 11.26 16 25 O -0.57 -17.34 16.51 15.96 0.26 -17.07 16 26 N -0.72 -9.27 5.68 -484.52 -2.75 -12.02 16 27 C 0.08 0.95 10.70 127.77 1.37 2.32 16 28 C 0.04 0.85 4.81 86.32 0.41 1.26 16 29 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.10 1.95 7.83 -2.39 -0.02 1.94 16 33 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.10 3.13 7.90 -2.38 -0.02 3.11 16 35 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 36 H 0.01 0.38 7.20 -2.39 -0.02 0.37 16 37 H 0.02 0.96 7.57 -2.39 -0.02 0.94 16 38 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 39 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.42 2.68 8.69 -92.71 -0.81 1.88 16 44 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.04 1.03 8.14 -2.39 -0.02 1.02 16 48 H 0.11 1.74 8.00 -2.39 -0.02 1.72 16 Total: -1.00 -82.12 397.39 0.88 -81.24 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.10 Total: 9.84 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 8.48 Total: 12.10 kcal Atomic # 7 Polarization: -112.94 SS G_CDS: -8.55 Total: -121.49 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -1.04 Total: -26.23 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.88 Total: 44.53 kcal Total: -82.12 0.88 -81.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121844646.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.595 kcal (2) G-P(sol) polarization free energy of solvation -82.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds