Wall clock time and date at job start Tue Mar 31 2020 20:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 H 1.08994 * 109.46677 * 29.99907 * 3 2 1 5 5 C 1.53001 * 109.47018 * 270.00354 * 3 2 1 6 6 C 1.50697 * 109.46859 * 150.00027 * 3 2 1 7 7 O 1.21280 * 120.00613 * 5.00509 * 6 3 2 8 8 N 1.34776 * 119.99644 * 184.99578 * 6 3 2 9 9 C 1.46502 * 120.00249 * 179.97438 * 8 6 3 10 10 H 1.09011 * 107.87556 * 38.45616 * 9 8 6 11 11 C 1.50949 * 108.02935 * 281.94263 * 9 8 6 12 12 C 1.53682 * 110.95195 * 165.71523 * 11 9 8 13 13 C 1.51880 * 106.90196 * 79.08160 * 12 11 9 14 14 N 1.29896 * 127.80302 * 114.73560 * 13 12 11 15 15 N 1.29038 * 109.22289 * 180.34019 * 14 13 12 16 16 C 1.30968 * 109.70667 * 359.92277 * 15 14 13 17 17 C 1.50707 * 126.60763 * 179.97438 * 16 15 14 18 18 N 1.46498 * 109.47597 * 269.98097 * 17 16 15 19 19 C 1.36929 * 120.00159 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00033 * 359.97438 * 19 18 17 21 21 C 1.38810 * 120.00183 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99804 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00263 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47197 * 59.99339 * 23 21 19 25 25 H 1.48507 * 109.47404 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46973 * 299.99498 * 23 21 19 27 27 N 1.34603 * 124.58254 * 294.89049 * 13 12 11 28 28 C 1.47507 * 125.02274 * 359.50947 * 27 13 12 29 29 C 1.50860 * 108.02935 * 155.00292 * 9 8 6 30 30 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 32 32 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 33 33 H 1.08998 * 109.46767 * 299.99763 * 5 3 2 34 34 H 1.08995 * 109.47219 * 60.00003 * 5 3 2 35 35 H 1.09001 * 109.46736 * 179.97438 * 5 3 2 36 36 H 0.97007 * 120.00221 * 0.02562 * 8 6 3 37 37 H 1.09002 * 109.17770 * 286.08608 * 11 9 8 38 38 H 1.08998 * 109.18435 * 45.33347 * 11 9 8 39 39 H 1.09002 * 109.97082 * 319.73049 * 12 11 9 40 40 H 1.09000 * 109.96471 * 198.42746 * 12 11 9 41 41 H 1.09006 * 109.46774 * 29.98633 * 17 16 15 42 42 H 1.09004 * 109.46582 * 149.97538 * 17 16 15 43 43 H 0.97001 * 119.99433 * 359.97438 * 18 17 16 44 44 H 0.97003 * 119.99857 * 179.97438 * 22 21 19 45 45 H 1.08996 * 109.93191 * 306.55293 * 28 27 13 46 46 H 1.08996 * 109.99977 * 185.37158 * 28 27 13 47 47 H 1.08996 * 109.15034 * 314.87925 * 29 9 8 48 48 H 1.09001 * 109.14653 * 74.02511 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3387 1.2637 0.7104 7 8 3.7898 0.2044 1.0913 8 7 4.0256 2.4038 0.9223 9 6 5.3167 2.3635 1.6134 10 1 5.8474 1.4719 1.2792 11 6 5.0507 2.2210 3.0924 12 6 6.3292 1.8190 3.8445 13 6 7.1571 3.0810 4.0138 14 7 7.4688 3.6863 5.1201 15 7 8.1785 4.7292 4.8483 16 6 8.3459 4.8242 3.5529 17 6 9.1118 5.8967 2.8219 18 7 8.2091 7.0023 2.4915 19 6 8.6847 8.0975 1.8211 20 1 9.7253 8.1464 1.5363 21 6 7.8296 9.1453 1.5085 22 7 6.5615 9.0858 1.8561 23 14 8.4781 10.6390 0.5934 24 1 9.0228 10.2158 -0.7217 25 1 7.3732 11.6085 0.3823 26 1 9.5539 11.2799 1.3916 27 7 7.7032 3.7783 3.0002 28 6 7.5932 3.4233 1.5727 29 6 6.1141 3.5700 1.1839 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 2.8829 1.0774 -1.9563 34 1 1.2569 1.8015 -1.9563 35 1 2.6607 2.7673 -1.4425 36 1 3.6647 3.2512 0.6179 37 1 4.6885 3.1714 3.4843 38 1 4.2889 1.4570 3.2473 39 1 6.8865 1.0833 3.2646 40 1 6.0730 1.4082 4.8210 41 1 9.9186 6.2636 3.4564 42 1 9.5306 5.4829 1.9045 43 1 7.2744 6.9581 2.7470 44 1 5.9640 9.8182 1.6379 45 1 7.9173 2.3940 1.4197 46 1 8.2037 4.0981 0.9727 47 1 6.0381 3.6822 0.1024 48 1 5.7045 4.4586 1.6642 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127944381.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:52 Heat of formation + Delta-G solvation = 12.074422 kcal Electronic energy + Delta-G solvation = -29919.220492 eV Core-core repulsion = 25818.271617 eV Total energy + Delta-G solvation = -4100.948875 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.00300 -40.49794 -38.41013 -37.15269 -35.20785 -34.57695 -33.53879 -32.24819 -31.48172 -30.73005 -29.35943 -27.21241 -26.52318 -25.86062 -24.22458 -24.14807 -22.90038 -21.31749 -20.79004 -20.50393 -19.91677 -17.82862 -17.56659 -17.39623 -16.86130 -16.30700 -15.78400 -15.66988 -15.21094 -15.02926 -14.91109 -14.66166 -14.22018 -14.05500 -13.70290 -13.63459 -13.28925 -13.09395 -12.91337 -12.86220 -12.77935 -12.59287 -12.33449 -12.18003 -11.85399 -11.73323 -11.58383 -11.45072 -11.11054 -11.02953 -10.91545 -10.87042 -10.40025 -10.24860 -9.98372 -9.97167 -9.88296 -9.72096 -9.40252 -9.03096 -8.68344 -7.10749 -5.88205 -3.19841 2.14221 2.32812 2.48613 2.70867 3.22906 3.36845 3.42420 3.43086 3.55861 4.17046 4.28655 4.37004 4.45101 4.47764 4.51105 4.58479 4.64522 4.81653 4.87877 4.90952 4.95994 4.97052 5.10638 5.13416 5.16713 5.25188 5.28533 5.31323 5.34290 5.46602 5.57251 5.65396 5.75486 5.78461 5.85996 5.93912 5.98284 6.14543 6.18760 6.29464 6.53604 6.57611 6.59823 7.15956 7.18283 7.57220 7.92525 8.27279 9.13488 9.40088 9.90667 10.27413 11.33825 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011087 B = 0.002987 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.980927 B = 9371.814404 C =11308.576757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.068 3.932 4 H 0.087 0.913 5 C -0.171 4.171 6 C 0.516 3.484 7 O -0.518 6.518 8 N -0.727 5.727 9 C 0.149 3.851 10 H 0.083 0.917 11 C -0.129 4.129 12 C -0.021 4.021 13 C 0.159 3.841 14 N -0.297 5.297 15 N -0.294 5.294 16 C 0.193 3.807 17 C 0.236 3.764 18 N -0.723 5.723 19 C -0.246 4.246 20 H 0.074 0.926 21 C -0.008 4.008 22 N -0.930 5.930 23 Si 0.911 3.089 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.284 1.284 27 N -0.463 5.463 28 C 0.113 3.887 29 C -0.144 4.144 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.402 0.598 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.057 0.943 42 H 0.037 0.963 43 H 0.386 0.614 44 H 0.257 0.743 45 H 0.094 0.906 46 H 0.115 0.885 47 H 0.096 0.904 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.931 -17.868 -7.435 21.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.007 3.993 4 H 0.105 0.895 5 C -0.229 4.229 6 C 0.300 3.700 7 O -0.392 6.392 8 N -0.380 5.380 9 C 0.046 3.954 10 H 0.101 0.899 11 C -0.168 4.168 12 C -0.062 4.062 13 C -0.109 4.109 14 N -0.136 5.136 15 N -0.134 5.134 16 C -0.075 4.075 17 C 0.107 3.893 18 N -0.369 5.369 19 C -0.377 4.377 20 H 0.092 0.908 21 C -0.204 4.204 22 N -0.577 5.577 23 Si 0.741 3.259 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.210 1.210 27 N -0.154 5.154 28 C -0.010 4.010 29 C -0.183 4.183 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.237 0.763 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.122 0.878 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.220 0.780 44 H 0.067 0.933 45 H 0.112 0.888 46 H 0.133 0.867 47 H 0.115 0.885 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.297 -18.381 -5.777 21.393 hybrid contribution -0.601 1.360 -1.922 2.430 sum -9.898 -17.021 -7.699 21.142 Atomic orbital electron populations 1.22896 0.80503 1.03314 1.00128 1.88049 1.19738 1.25074 1.94944 1.21949 0.93515 0.86989 0.96878 0.89490 1.22236 1.03578 1.02172 0.94893 1.20375 0.86187 0.84087 0.79316 1.90726 1.68864 1.29699 1.49891 1.46198 1.22061 1.09590 1.60189 1.20361 0.83618 0.99463 0.92002 0.89864 1.21721 0.97916 1.03334 0.93850 1.20345 0.93008 0.89915 1.02883 1.24645 1.02085 0.99391 0.84765 1.74195 1.13122 1.03841 1.22481 1.74577 1.15254 1.12568 1.10981 1.25237 0.99256 0.91907 0.91120 1.19060 0.91599 0.84104 0.94582 1.42260 1.08739 1.16919 1.68978 1.19141 0.94680 0.95150 1.28687 0.90804 1.24761 0.95656 0.98625 1.01398 1.69669 1.03441 1.33153 1.51449 0.86222 0.77596 0.82536 0.79509 1.21180 1.21655 1.21030 1.46064 1.39480 1.20971 1.08889 1.22260 0.97584 1.02961 0.78212 1.21896 0.94061 0.98884 1.03428 0.89088 0.93773 0.93737 0.90993 0.91139 0.90694 0.76288 0.90918 0.89730 0.89531 0.87828 0.92536 0.94558 0.77991 0.93327 0.88782 0.86727 0.88529 0.89321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.82 101.05 1.09 1.27 16 2 O -0.36 -3.68 9.89 -55.09 -0.54 -4.22 16 3 C 0.07 0.56 3.13 -27.88 -0.09 0.47 16 4 H 0.09 0.52 7.79 -51.93 -0.40 0.12 16 5 C -0.17 -1.06 9.48 37.16 0.35 -0.71 16 6 C 0.52 5.43 6.78 -10.99 -0.07 5.36 16 7 O -0.52 -7.56 15.62 -14.30 -0.22 -7.78 16 8 N -0.73 -6.26 4.96 -55.87 -0.28 -6.53 16 9 C 0.15 1.45 1.90 -70.03 -0.13 1.31 16 10 H 0.08 0.84 7.13 -51.92 -0.37 0.47 16 11 C -0.13 -1.40 5.10 -27.41 -0.14 -1.54 16 12 C -0.02 -0.24 6.02 -26.95 -0.16 -0.40 16 13 C 0.16 2.48 7.03 -155.74 -1.09 1.39 16 14 N -0.30 -5.81 12.23 32.84 0.40 -5.41 16 15 N -0.29 -6.30 12.25 32.71 0.40 -5.89 16 16 C 0.19 3.66 7.45 -155.40 -1.16 2.50 16 17 C 0.24 4.68 6.55 -5.19 -0.03 4.65 16 18 N -0.72 -17.62 5.59 -61.08 -0.34 -17.96 16 19 C -0.25 -6.51 9.99 -15.06 -0.15 -6.66 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 22 N -0.93 -27.02 13.06 55.49 0.72 -26.30 16 23 Si 0.91 21.45 29.55 -169.99 -5.02 16.42 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 N -0.46 -7.04 2.72 -109.58 -0.30 -7.34 16 28 C 0.11 1.25 6.48 -3.16 -0.02 1.23 16 29 C -0.14 -1.45 5.05 -27.47 -0.14 -1.59 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.04 0.21 7.87 -51.93 -0.41 -0.20 16 32 H 0.04 0.24 8.09 -51.93 -0.42 -0.18 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.36 7.87 -51.93 -0.41 -0.05 16 35 H 0.07 0.36 7.93 -51.93 -0.41 -0.05 16 36 H 0.40 2.66 8.32 -40.82 -0.34 2.32 16 37 H 0.07 0.90 7.91 -51.93 -0.41 0.49 16 38 H 0.08 0.94 7.23 -51.93 -0.38 0.57 16 39 H 0.09 0.82 7.89 -51.93 -0.41 0.41 16 40 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.04 0.65 7.28 -51.93 -0.38 0.27 16 43 H 0.39 10.25 7.66 -40.82 -0.31 9.94 16 44 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.09 0.79 7.87 -51.93 -0.41 0.38 16 46 H 0.11 1.28 7.04 -51.93 -0.37 0.91 16 47 H 0.10 0.81 8.12 -51.93 -0.42 0.38 16 48 H 0.09 1.15 8.08 -51.93 -0.42 0.73 16 LS Contribution 391.25 15.07 5.90 5.90 Total: -1.00 -35.97 391.25 -8.63 -44.60 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -7.50 Total: 7.56 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -1.84 Total: 6.96 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: 0.61 Total: -69.44 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -0.77 Total: -12.00 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.97 -8.63 -44.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127944381.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.677 kcal (2) G-P(sol) polarization free energy of solvation -35.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds