Wall clock time and date at job start Tue Mar 31 2020 20:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 H 1.08994 * 109.46677 * 29.99907 * 3 2 1 5 5 C 1.53001 * 109.47018 * 270.00354 * 3 2 1 6 6 C 1.50697 * 109.46859 * 150.00027 * 3 2 1 7 7 O 1.21280 * 120.00613 * 5.00509 * 6 3 2 8 8 N 1.34776 * 119.99644 * 184.99578 * 6 3 2 9 9 C 1.46502 * 120.00249 * 179.97438 * 8 6 3 10 10 H 1.09011 * 107.87556 * 38.45616 * 9 8 6 11 11 C 1.50949 * 108.02935 * 281.94263 * 9 8 6 12 12 C 1.53682 * 110.95195 * 165.71523 * 11 9 8 13 13 C 1.51880 * 106.90196 * 79.08160 * 12 11 9 14 14 N 1.29896 * 127.80302 * 114.73560 * 13 12 11 15 15 N 1.29038 * 109.22289 * 180.34019 * 14 13 12 16 16 C 1.30968 * 109.70667 * 359.92277 * 15 14 13 17 17 C 1.50707 * 126.60763 * 179.97438 * 16 15 14 18 18 N 1.46498 * 109.47597 * 269.98097 * 17 16 15 19 19 C 1.36929 * 120.00159 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00033 * 359.97438 * 19 18 17 21 21 C 1.38810 * 120.00183 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99804 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00263 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47197 * 59.99339 * 23 21 19 25 25 H 1.48507 * 109.47404 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46973 * 299.99498 * 23 21 19 27 27 N 1.34603 * 124.58254 * 294.89049 * 13 12 11 28 28 C 1.47507 * 125.02274 * 359.50947 * 27 13 12 29 29 C 1.50860 * 108.02935 * 155.00292 * 9 8 6 30 30 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 32 32 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 33 33 H 1.08998 * 109.46767 * 299.99763 * 5 3 2 34 34 H 1.08995 * 109.47219 * 60.00003 * 5 3 2 35 35 H 1.09001 * 109.46736 * 179.97438 * 5 3 2 36 36 H 0.97007 * 120.00221 * 0.02562 * 8 6 3 37 37 H 1.09002 * 109.17770 * 286.08608 * 11 9 8 38 38 H 1.08998 * 109.18435 * 45.33347 * 11 9 8 39 39 H 1.09002 * 109.97082 * 319.73049 * 12 11 9 40 40 H 1.09000 * 109.96471 * 198.42746 * 12 11 9 41 41 H 1.09006 * 109.46774 * 29.98633 * 17 16 15 42 42 H 1.09004 * 109.46582 * 149.97538 * 17 16 15 43 43 H 0.97001 * 119.99433 * 359.97438 * 18 17 16 44 44 H 0.97003 * 119.99857 * 179.97438 * 22 21 19 45 45 H 1.08996 * 109.93191 * 306.55293 * 28 27 13 46 46 H 1.08996 * 109.99977 * 185.37158 * 28 27 13 47 47 H 1.08996 * 109.15034 * 314.87925 * 29 9 8 48 48 H 1.09001 * 109.14653 * 74.02511 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3387 1.2637 0.7104 7 8 3.7898 0.2044 1.0913 8 7 4.0256 2.4038 0.9223 9 6 5.3167 2.3635 1.6134 10 1 5.8474 1.4719 1.2792 11 6 5.0507 2.2210 3.0924 12 6 6.3292 1.8190 3.8445 13 6 7.1571 3.0810 4.0138 14 7 7.4688 3.6863 5.1201 15 7 8.1785 4.7292 4.8483 16 6 8.3459 4.8242 3.5529 17 6 9.1118 5.8967 2.8219 18 7 8.2091 7.0023 2.4915 19 6 8.6847 8.0975 1.8211 20 1 9.7253 8.1464 1.5363 21 6 7.8296 9.1453 1.5085 22 7 6.5615 9.0858 1.8561 23 14 8.4781 10.6390 0.5934 24 1 9.0228 10.2158 -0.7217 25 1 7.3732 11.6085 0.3823 26 1 9.5539 11.2799 1.3916 27 7 7.7032 3.7783 3.0002 28 6 7.5932 3.4233 1.5727 29 6 6.1141 3.5700 1.1839 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 2.8829 1.0774 -1.9563 34 1 1.2569 1.8015 -1.9563 35 1 2.6607 2.7673 -1.4425 36 1 3.6647 3.2512 0.6179 37 1 4.6885 3.1714 3.4843 38 1 4.2889 1.4570 3.2473 39 1 6.8865 1.0833 3.2646 40 1 6.0730 1.4082 4.8210 41 1 9.9186 6.2636 3.4564 42 1 9.5306 5.4829 1.9045 43 1 7.2744 6.9581 2.7470 44 1 5.9640 9.8182 1.6379 45 1 7.9173 2.3940 1.4197 46 1 8.2037 4.0981 0.9727 47 1 6.0381 3.6822 0.1024 48 1 5.7045 4.4586 1.6642 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127944381.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:51 Heat of formation + Delta-G solvation = -13.094544 kcal Electronic energy + Delta-G solvation = -29920.311900 eV Core-core repulsion = 25818.271617 eV Total energy + Delta-G solvation = -4102.040284 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.33636 -41.29885 -39.14576 -38.03828 -36.90677 -35.72131 -34.69274 -33.36474 -32.92316 -31.59765 -30.83600 -27.88709 -27.69599 -27.10379 -25.39747 -24.82439 -24.72276 -22.43801 -21.65763 -21.57707 -21.05899 -19.42257 -18.55656 -18.21668 -17.94479 -17.29371 -16.98809 -16.50137 -16.36864 -16.10258 -15.88287 -15.79608 -15.69909 -15.09651 -15.03238 -14.55384 -14.34992 -14.30612 -14.10792 -13.85918 -13.60642 -13.41331 -13.23699 -13.13761 -12.94044 -12.77067 -12.73500 -12.66753 -12.51296 -12.20191 -12.14719 -12.11109 -11.91129 -11.88256 -11.34912 -11.18890 -11.00822 -10.98275 -10.51470 -10.23390 -10.09318 -9.09290 -7.95206 -5.27365 0.82377 1.50479 1.53144 1.54201 1.54469 1.59773 1.76666 1.83196 2.57781 2.97541 3.15579 3.35701 3.39414 3.46971 3.57886 3.67583 3.77106 3.91043 3.94117 4.02877 4.04911 4.06483 4.19543 4.27288 4.30009 4.45132 4.46252 4.54259 4.56947 4.65335 4.68349 4.79946 4.82082 4.86312 4.87439 4.99368 5.02558 5.08453 5.08754 5.19307 5.20214 5.37141 5.50284 5.93862 6.05011 6.21788 6.49004 7.16797 7.30413 7.73255 7.94663 8.22801 9.27607 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011087 B = 0.002987 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.980927 B = 9371.814404 C =11308.576757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.395 6.395 3 C 0.067 3.933 4 H 0.110 0.890 5 C -0.166 4.166 6 C 0.514 3.486 7 O -0.562 6.562 8 N -0.715 5.715 9 C 0.153 3.847 10 H 0.090 0.910 11 C -0.120 4.120 12 C -0.017 4.017 13 C 0.178 3.822 14 N -0.339 5.339 15 N -0.337 5.337 16 C 0.181 3.819 17 C 0.241 3.759 18 N -0.733 5.733 19 C -0.246 4.246 20 H 0.086 0.914 21 C -0.068 4.068 22 N -0.967 5.967 23 Si 0.976 3.024 24 H -0.270 1.270 25 H -0.299 1.299 26 H -0.282 1.282 27 N -0.454 5.454 28 C 0.104 3.896 29 C -0.133 4.133 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.414 0.586 37 H 0.052 0.948 38 H 0.084 0.916 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.050 0.950 42 H 0.068 0.932 43 H 0.372 0.628 44 H 0.251 0.749 45 H 0.130 0.870 46 H 0.117 0.883 47 H 0.120 0.880 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.946 -18.667 -9.578 23.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.313 6.313 3 C 0.006 3.994 4 H 0.127 0.873 5 C -0.224 4.224 6 C 0.300 3.700 7 O -0.440 6.440 8 N -0.368 5.368 9 C 0.049 3.951 10 H 0.108 0.892 11 C -0.159 4.159 12 C -0.057 4.057 13 C -0.091 4.091 14 N -0.179 5.179 15 N -0.178 5.178 16 C -0.088 4.088 17 C 0.112 3.888 18 N -0.377 5.377 19 C -0.377 4.377 20 H 0.104 0.896 21 C -0.261 4.261 22 N -0.617 5.617 23 Si 0.805 3.195 24 H -0.196 1.196 25 H -0.225 1.225 26 H -0.208 1.208 27 N -0.144 5.144 28 C -0.017 4.017 29 C -0.172 4.172 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.250 0.750 37 H 0.071 0.929 38 H 0.103 0.897 39 H 0.133 0.867 40 H 0.129 0.871 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.203 0.797 44 H 0.060 0.940 45 H 0.148 0.852 46 H 0.135 0.865 47 H 0.139 0.861 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.284 -19.182 -7.949 22.745 hybrid contribution -0.619 1.509 -1.229 2.043 sum -9.903 -17.673 -9.178 22.241 Atomic orbital electron populations 1.23075 0.78803 1.04142 1.01326 1.88001 1.21738 1.26390 1.95183 1.22086 0.92450 0.86938 0.97949 0.87251 1.22224 1.04233 1.02461 0.93441 1.20875 0.86849 0.83590 0.78641 1.90700 1.70084 1.31278 1.51923 1.46095 1.21548 1.09834 1.59368 1.20258 0.84175 0.99420 0.91231 0.89201 1.21621 0.97536 1.02175 0.94603 1.20587 0.92706 0.88424 1.04016 1.25339 1.00346 0.99522 0.83897 1.74094 1.14684 1.04459 1.24617 1.74456 1.16679 1.13948 1.12675 1.24934 1.00198 0.92869 0.90800 1.19080 0.90700 0.83335 0.95647 1.42375 1.08601 1.17845 1.68862 1.19577 0.95120 0.95496 1.27511 0.89585 1.25568 0.95924 1.01553 1.03016 1.69834 1.04689 1.33806 1.53387 0.85183 0.76597 0.78936 0.78806 1.19607 1.22515 1.20806 1.46227 1.38122 1.19609 1.10480 1.22694 0.98291 1.05060 0.75639 1.21806 0.93301 0.97531 1.04536 0.88607 0.92027 0.93013 0.92383 0.89692 0.89127 0.74957 0.92912 0.89710 0.86694 0.87105 0.93258 0.91408 0.79687 0.93986 0.85203 0.86518 0.86141 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.82 113.37 1.23 1.47 16 2 O -0.39 -7.60 9.89 -129.99 -1.29 -8.89 16 3 C 0.07 0.97 3.13 29.85 0.09 1.06 16 4 H 0.11 1.05 7.79 -2.39 -0.02 1.04 16 5 C -0.17 -1.69 9.48 71.98 0.68 -1.01 16 6 C 0.51 10.07 6.78 87.66 0.59 10.67 16 7 O -0.56 -15.89 15.62 15.96 0.25 -15.64 16 8 N -0.72 -10.95 4.96 -449.05 -2.23 -13.18 16 9 C 0.15 2.65 1.90 43.63 0.08 2.74 16 10 H 0.09 1.54 7.13 -2.38 -0.02 1.52 16 11 C -0.12 -2.45 5.10 30.16 0.15 -2.29 16 12 C -0.02 -0.36 6.02 30.46 0.18 -0.18 16 13 C 0.18 5.42 7.03 138.82 0.98 6.40 16 14 N -0.34 -13.49 12.23 -50.00 -0.61 -14.10 16 15 N -0.34 -14.79 12.25 -50.44 -0.62 -15.41 16 16 C 0.18 6.89 7.45 138.12 1.03 7.92 16 17 C 0.24 9.44 6.55 85.64 0.56 10.00 16 18 N -0.73 -35.79 5.59 -347.17 -1.94 -37.74 16 19 C -0.25 -12.88 9.99 84.03 0.84 -12.04 16 20 H 0.09 4.21 7.83 -2.91 -0.02 4.19 16 21 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 22 N -0.97 -56.97 13.06 21.65 0.28 -56.68 16 23 Si 0.98 43.80 29.55 68.60 2.03 45.83 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 25 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 26 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 27 N -0.45 -13.34 2.72 -500.62 -1.36 -14.70 16 28 C 0.10 2.04 6.48 86.40 0.56 2.60 16 29 C -0.13 -2.42 5.05 30.11 0.15 -2.27 16 30 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 0.44 7.87 -2.39 -0.02 0.42 16 32 H 0.05 0.47 8.09 -2.38 -0.02 0.46 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 0.63 7.87 -2.39 -0.02 0.61 16 35 H 0.09 0.62 7.93 -2.39 -0.02 0.60 16 36 H 0.41 4.60 8.32 -92.70 -0.77 3.82 16 37 H 0.05 1.30 7.91 -2.39 -0.02 1.28 16 38 H 0.08 1.79 7.23 -2.39 -0.02 1.77 16 39 H 0.11 1.81 7.89 -2.39 -0.02 1.79 16 40 H 0.11 2.19 8.14 -2.39 -0.02 2.18 16 41 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 42 H 0.07 2.26 7.28 -2.39 -0.02 2.24 16 43 H 0.37 20.14 7.66 -92.71 -0.71 19.43 16 44 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 45 H 0.13 1.66 7.87 -2.39 -0.02 1.64 16 46 H 0.12 2.29 7.04 -2.39 -0.02 2.27 16 47 H 0.12 1.65 8.12 -2.39 -0.02 1.63 16 48 H 0.06 1.47 8.08 -2.39 -0.02 1.45 16 Total: -1.00 -80.05 391.25 1.63 -78.42 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: -0.49 Total: 30.26 kcal Atomic # 6 Polarization: 14.23 SS G_CDS: 7.60 Total: 21.83 kcal Atomic # 7 Polarization: -145.33 SS G_CDS: -6.47 Total: -151.81 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -1.04 Total: -24.53 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -80.05 1.63 -78.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127944381.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.326 kcal (2) G-P(sol) polarization free energy of solvation -80.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds