Wall clock time and date at job start Tue Mar 31 2020 20:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99811 * 2 1 4 4 H 1.09004 * 109.47694 * 29.99227 * 3 2 1 5 5 C 1.52996 * 109.47047 * 269.99701 * 3 2 1 6 6 C 1.50698 * 109.47458 * 149.99463 * 3 2 1 7 7 O 1.21286 * 119.99631 * 4.99972 * 6 3 2 8 8 N 1.34779 * 120.00558 * 184.99605 * 6 3 2 9 9 C 1.46496 * 120.00299 * 179.97438 * 8 6 3 10 10 H 1.08998 * 107.84891 * 328.47017 * 9 8 6 11 11 C 1.50955 * 108.02527 * 85.00399 * 9 8 6 12 12 C 1.53672 * 110.95478 * 194.29376 * 11 9 8 13 13 C 1.51883 * 106.90549 * 280.90263 * 12 11 9 14 14 N 1.29889 * 127.81059 * 245.21890 * 13 12 11 15 15 N 1.29032 * 109.22175 * 179.43015 * 14 13 12 16 16 C 1.30965 * 109.70768 * 0.50060 * 15 14 13 17 17 C 1.50702 * 126.60956 * 179.90844 * 16 15 14 18 18 N 1.46496 * 109.47670 * 269.69185 * 17 16 15 19 19 C 1.36934 * 120.00548 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99288 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00389 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00257 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00277 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00228 * 23 21 19 26 26 H 1.48499 * 109.46981 * 150.00382 * 23 21 19 27 27 N 1.34596 * 124.56825 * 65.07670 * 13 12 11 28 28 C 1.47506 * 125.03751 * 0.54130 * 27 13 12 29 29 C 1.50859 * 108.02755 * 211.93276 * 9 8 6 30 30 H 1.08999 * 109.47305 * 300.00337 * 1 2 3 31 31 H 1.09001 * 109.46782 * 60.00496 * 1 2 3 32 32 H 1.08999 * 109.46749 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47339 * 60.00116 * 5 3 2 34 34 H 1.09000 * 109.47531 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.47293 * 299.99885 * 5 3 2 36 36 H 0.97005 * 119.99523 * 0.02562 * 8 6 3 37 37 H 1.08995 * 109.18228 * 73.91162 * 11 9 8 38 38 H 1.09007 * 109.14126 * 314.64492 * 11 9 8 39 39 H 1.09001 * 109.96458 * 161.55725 * 12 11 9 40 40 H 1.09003 * 110.04049 * 40.29527 * 12 11 9 41 41 H 1.09004 * 109.46923 * 149.69273 * 17 16 15 42 42 H 1.09004 * 109.46818 * 29.69824 * 17 16 15 43 43 H 0.96999 * 119.99694 * 0.02562 * 18 17 16 44 44 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 45 45 H 1.08998 * 109.92816 * 53.41773 * 28 27 13 46 46 H 1.08998 * 109.93121 * 174.63171 * 28 27 13 47 47 H 1.08995 * 109.15070 * 285.98767 * 29 9 8 48 48 H 1.08996 * 109.14740 * 45.14691 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9995 0.5137 5 6 2.2177 1.7713 -1.4425 6 6 3.3385 1.2640 0.7105 7 8 3.7896 0.2046 1.0916 8 7 4.0254 2.4042 0.9224 9 6 5.3164 2.3639 1.6136 10 1 5.2877 1.5407 2.3274 11 6 6.3843 2.0588 0.5913 12 6 7.6993 1.6522 1.2747 13 6 8.3702 2.9333 1.7389 14 7 9.4929 3.4392 1.3256 15 7 9.7182 4.5433 1.9541 16 6 8.7471 4.7752 2.8017 17 6 8.6273 5.9562 3.7301 18 7 9.2670 5.6388 5.0092 19 6 9.2834 6.5672 6.0156 20 1 8.8243 7.5334 5.8664 21 6 9.8900 6.2667 7.2274 22 7 9.9054 7.1589 8.1949 23 14 10.6835 4.5953 7.4855 24 1 9.6794 3.6506 8.0373 25 1 11.1864 4.0802 6.1867 26 1 11.8154 4.7265 8.4378 27 7 7.8735 3.7579 2.6796 28 6 6.6117 3.5437 3.4129 29 6 5.4712 3.6488 2.3887 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.2569 1.8014 -1.9564 34 1 2.6614 2.7669 -1.4426 35 1 2.8830 1.0774 -1.9563 36 1 3.6644 3.2515 0.6179 37 1 6.5575 2.9439 -0.0208 38 1 6.0452 1.2428 -0.0471 39 1 8.3421 1.1316 0.5649 40 1 7.4924 1.0092 2.1302 41 1 7.5740 6.1819 3.8968 42 1 9.1179 6.8209 3.2831 43 1 9.6797 4.7712 5.1430 44 1 10.3290 6.9487 9.0419 45 1 6.6109 2.5540 3.8697 46 1 6.4936 4.3085 4.1805 47 1 5.6876 4.4611 1.6949 48 1 4.5399 3.8652 2.9119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127944382.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:54 Heat of formation + Delta-G solvation = 16.477394 kcal Electronic energy + Delta-G solvation = -29669.720941 eV Core-core repulsion = 25568.962993 eV Total energy + Delta-G solvation = -4100.757948 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.15859 -40.65203 -38.56053 -37.32281 -35.41348 -34.75167 -33.66256 -32.40758 -31.64544 -30.89689 -29.73166 -27.33672 -26.79547 -26.09821 -24.38653 -24.26264 -22.50908 -21.43627 -20.95993 -20.74309 -20.09301 -18.11411 -17.83913 -17.59464 -17.05937 -16.39174 -16.04363 -15.75910 -15.38998 -15.16829 -15.00506 -14.58529 -14.44984 -14.36037 -13.90251 -13.65521 -13.31885 -13.21461 -13.08241 -12.99828 -12.84082 -12.70793 -12.48535 -12.36170 -12.12191 -11.90696 -11.71400 -11.62526 -11.42599 -11.23215 -11.04619 -10.95091 -10.53731 -10.25570 -10.14304 -10.07446 -9.88171 -9.70115 -9.59540 -9.04959 -8.84687 -7.40672 -5.87207 -3.25700 1.98825 2.16786 2.32266 2.56262 3.08016 3.31664 3.39698 3.40909 3.41744 3.98364 4.11408 4.22049 4.29381 4.33597 4.40695 4.47473 4.51402 4.64684 4.73250 4.75489 4.81624 4.84186 4.94315 4.97568 5.00958 5.11371 5.18283 5.19282 5.23114 5.32879 5.42942 5.48802 5.50806 5.56953 5.63334 5.66986 5.78058 5.95724 6.04783 6.17577 6.39312 6.45106 6.46722 6.99680 7.01071 7.76890 7.82924 8.30136 8.98557 9.05656 9.78507 9.96267 11.30077 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018221 B = 0.002434 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.323047 B =11499.672964 C =12096.521325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.069 3.931 4 H 0.087 0.913 5 C -0.171 4.171 6 C 0.515 3.485 7 O -0.514 6.514 8 N -0.728 5.728 9 C 0.143 3.857 10 H 0.090 0.910 11 C -0.125 4.125 12 C -0.024 4.024 13 C 0.161 3.839 14 N -0.296 5.296 15 N -0.292 5.292 16 C 0.186 3.814 17 C 0.242 3.758 18 N -0.748 5.748 19 C -0.251 4.251 20 H 0.095 0.905 21 C 0.013 3.987 22 N -0.928 5.928 23 Si 0.880 3.120 24 H -0.284 1.284 25 H -0.276 1.276 26 H -0.288 1.288 27 N -0.464 5.464 28 C 0.107 3.893 29 C -0.142 4.142 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.400 0.600 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.088 0.912 41 H 0.046 0.954 42 H 0.065 0.935 43 H 0.364 0.636 44 H 0.262 0.738 45 H 0.098 0.902 46 H 0.119 0.881 47 H 0.081 0.919 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.226 -11.529 -18.962 31.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.008 3.992 4 H 0.105 0.895 5 C -0.229 4.229 6 C 0.299 3.701 7 O -0.388 6.388 8 N -0.382 5.382 9 C 0.039 3.961 10 H 0.108 0.892 11 C -0.164 4.164 12 C -0.064 4.064 13 C -0.107 4.107 14 N -0.135 5.135 15 N -0.132 5.132 16 C -0.082 4.082 17 C 0.113 3.887 18 N -0.395 5.395 19 C -0.380 4.380 20 H 0.113 0.887 21 C -0.184 4.184 22 N -0.574 5.574 23 Si 0.710 3.290 24 H -0.210 1.210 25 H -0.202 1.202 26 H -0.214 1.214 27 N -0.155 5.155 28 C -0.016 4.016 29 C -0.181 4.181 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.235 0.765 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.123 0.877 40 H 0.107 0.893 41 H 0.063 0.937 42 H 0.083 0.917 43 H 0.197 0.803 44 H 0.072 0.928 45 H 0.116 0.884 46 H 0.137 0.863 47 H 0.099 0.901 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -20.550 -12.084 -19.312 30.680 hybrid contribution -0.933 -0.614 0.902 1.435 sum -21.482 -12.698 -18.410 31.010 Atomic orbital electron populations 1.22904 0.80400 1.03444 1.00093 1.88063 1.19818 1.24954 1.94923 1.21934 0.93417 0.87100 0.96789 0.89533 1.22235 1.03620 1.02063 0.94951 1.20420 0.86110 0.84146 0.79392 1.90750 1.69206 1.29566 1.49235 1.46154 1.21687 1.09524 1.60818 1.20403 0.82341 0.99011 0.94312 0.89180 1.21700 0.93489 1.02926 0.98319 1.20380 0.94950 0.89737 1.01378 1.24665 0.94722 0.97453 0.93882 1.74210 1.12229 1.04752 1.22340 1.74591 1.20963 1.09800 1.07837 1.25299 0.88270 0.93745 1.00845 1.19018 0.97712 0.88594 0.83416 1.42654 1.69144 1.16882 1.10833 1.18968 1.32090 0.96315 0.90630 0.88733 1.24627 1.00185 0.97458 0.96127 1.69689 1.48914 1.33940 1.04896 0.86608 0.79562 0.85107 0.77698 1.21044 1.20218 1.21365 1.46098 1.20012 1.18844 1.30543 1.22359 0.79348 1.05394 0.94489 1.21932 0.99665 0.97855 0.98642 0.93732 0.93747 0.89003 0.91078 0.90866 0.90921 0.76547 0.91040 0.89774 0.87680 0.89341 0.93652 0.91728 0.80309 0.92827 0.88379 0.86268 0.90059 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.82 101.05 1.09 1.23 16 2 O -0.36 -3.19 9.89 -55.09 -0.54 -3.74 16 3 C 0.07 0.44 3.13 -27.89 -0.09 0.35 16 4 H 0.09 0.33 7.79 -51.93 -0.40 -0.08 16 5 C -0.17 -0.75 9.48 37.16 0.35 -0.40 16 6 C 0.51 4.51 6.93 -10.99 -0.08 4.43 16 7 O -0.51 -6.90 16.06 -14.31 -0.23 -7.13 16 8 N -0.73 -4.46 4.86 -55.87 -0.27 -4.73 16 9 C 0.14 1.08 1.95 -70.03 -0.14 0.95 16 10 H 0.09 0.82 6.90 -51.93 -0.36 0.46 16 11 C -0.12 -1.07 5.14 -27.41 -0.14 -1.21 16 12 C -0.02 -0.25 6.02 -26.95 -0.16 -0.41 16 13 C 0.16 2.33 7.03 -155.75 -1.09 1.24 16 14 N -0.30 -5.47 12.23 32.84 0.40 -5.07 16 15 N -0.29 -5.92 12.24 32.71 0.40 -5.52 16 16 C 0.19 3.33 7.45 -155.39 -1.16 2.17 16 17 C 0.24 4.56 6.48 -5.19 -0.03 4.53 16 18 N -0.75 -17.46 5.40 -61.09 -0.33 -17.79 16 19 C -0.25 -6.83 10.47 -15.06 -0.16 -6.99 16 20 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 21 C 0.01 0.37 5.50 -17.43 -0.10 0.27 16 22 N -0.93 -28.42 13.97 55.49 0.78 -27.64 16 23 Si 0.88 22.13 27.74 -169.99 -4.71 17.42 16 24 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.87 6.52 56.52 0.37 -6.51 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 N -0.46 -6.57 2.72 -109.58 -0.30 -6.87 16 28 C 0.11 1.08 6.47 -3.16 -0.02 1.06 16 29 C -0.14 -1.00 5.09 -27.47 -0.14 -1.14 16 30 H 0.04 0.18 8.08 -51.93 -0.42 -0.24 16 31 H 0.04 0.15 7.87 -51.93 -0.41 -0.26 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.23 7.87 -51.93 -0.41 -0.18 16 34 H 0.07 0.19 7.92 -51.93 -0.41 -0.22 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.40 1.33 8.40 -40.82 -0.34 0.99 16 37 H 0.07 0.65 7.91 -51.93 -0.41 0.23 16 38 H 0.08 0.74 7.91 -51.93 -0.41 0.33 16 39 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.09 0.82 7.89 -51.93 -0.41 0.41 16 41 H 0.05 0.76 7.46 -51.93 -0.39 0.37 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.36 8.74 5.52 -40.82 -0.23 8.52 16 44 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 45 H 0.10 0.88 7.87 -51.93 -0.41 0.47 16 46 H 0.12 1.25 7.16 -51.93 -0.37 0.88 16 47 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 48 H 0.10 0.51 8.12 -51.93 -0.42 0.09 16 LS Contribution 389.50 15.07 5.87 5.87 Total: -1.00 -37.86 389.50 -8.30 -46.16 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -7.50 Total: 2.96 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -1.86 Total: 6.08 kcal Atomic # 7 Polarization: -68.29 SS G_CDS: 0.68 Total: -67.61 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: -0.77 Total: -10.87 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.71 Total: 17.42 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.86 -8.30 -46.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127944382.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.637 kcal (2) G-P(sol) polarization free energy of solvation -37.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds