Wall clock time and date at job start Tue Mar 31 2020 20:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99811 * 2 1 4 4 H 1.09004 * 109.47694 * 29.99227 * 3 2 1 5 5 C 1.52996 * 109.47047 * 269.99701 * 3 2 1 6 6 C 1.50698 * 109.47458 * 149.99463 * 3 2 1 7 7 O 1.21286 * 119.99631 * 4.99972 * 6 3 2 8 8 N 1.34779 * 120.00558 * 184.99605 * 6 3 2 9 9 C 1.46496 * 120.00299 * 179.97438 * 8 6 3 10 10 H 1.08998 * 107.84891 * 328.47017 * 9 8 6 11 11 C 1.50955 * 108.02527 * 85.00399 * 9 8 6 12 12 C 1.53672 * 110.95478 * 194.29376 * 11 9 8 13 13 C 1.51883 * 106.90549 * 280.90263 * 12 11 9 14 14 N 1.29889 * 127.81059 * 245.21890 * 13 12 11 15 15 N 1.29032 * 109.22175 * 179.43015 * 14 13 12 16 16 C 1.30965 * 109.70768 * 0.50060 * 15 14 13 17 17 C 1.50702 * 126.60956 * 179.90844 * 16 15 14 18 18 N 1.46496 * 109.47670 * 269.69185 * 17 16 15 19 19 C 1.36934 * 120.00548 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99288 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00389 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00257 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00277 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00228 * 23 21 19 26 26 H 1.48499 * 109.46981 * 150.00382 * 23 21 19 27 27 N 1.34596 * 124.56825 * 65.07670 * 13 12 11 28 28 C 1.47506 * 125.03751 * 0.54130 * 27 13 12 29 29 C 1.50859 * 108.02755 * 211.93276 * 9 8 6 30 30 H 1.08999 * 109.47305 * 300.00337 * 1 2 3 31 31 H 1.09001 * 109.46782 * 60.00496 * 1 2 3 32 32 H 1.08999 * 109.46749 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47339 * 60.00116 * 5 3 2 34 34 H 1.09000 * 109.47531 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.47293 * 299.99885 * 5 3 2 36 36 H 0.97005 * 119.99523 * 0.02562 * 8 6 3 37 37 H 1.08995 * 109.18228 * 73.91162 * 11 9 8 38 38 H 1.09007 * 109.14126 * 314.64492 * 11 9 8 39 39 H 1.09001 * 109.96458 * 161.55725 * 12 11 9 40 40 H 1.09003 * 110.04049 * 40.29527 * 12 11 9 41 41 H 1.09004 * 109.46923 * 149.69273 * 17 16 15 42 42 H 1.09004 * 109.46818 * 29.69824 * 17 16 15 43 43 H 0.96999 * 119.99694 * 0.02562 * 18 17 16 44 44 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 45 45 H 1.08998 * 109.92816 * 53.41773 * 28 27 13 46 46 H 1.08998 * 109.93121 * 174.63171 * 28 27 13 47 47 H 1.08995 * 109.15070 * 285.98767 * 29 9 8 48 48 H 1.08996 * 109.14740 * 45.14691 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9995 0.5137 5 6 2.2177 1.7713 -1.4425 6 6 3.3385 1.2640 0.7105 7 8 3.7896 0.2046 1.0916 8 7 4.0254 2.4042 0.9224 9 6 5.3164 2.3639 1.6136 10 1 5.2877 1.5407 2.3274 11 6 6.3843 2.0588 0.5913 12 6 7.6993 1.6522 1.2747 13 6 8.3702 2.9333 1.7389 14 7 9.4929 3.4392 1.3256 15 7 9.7182 4.5433 1.9541 16 6 8.7471 4.7752 2.8017 17 6 8.6273 5.9562 3.7301 18 7 9.2670 5.6388 5.0092 19 6 9.2834 6.5672 6.0156 20 1 8.8243 7.5334 5.8664 21 6 9.8900 6.2667 7.2274 22 7 9.9054 7.1589 8.1949 23 14 10.6835 4.5953 7.4855 24 1 9.6794 3.6506 8.0373 25 1 11.1864 4.0802 6.1867 26 1 11.8154 4.7265 8.4378 27 7 7.8735 3.7579 2.6796 28 6 6.6117 3.5437 3.4129 29 6 5.4712 3.6488 2.3887 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.2569 1.8014 -1.9564 34 1 2.6614 2.7669 -1.4426 35 1 2.8830 1.0774 -1.9563 36 1 3.6644 3.2515 0.6179 37 1 6.5575 2.9439 -0.0208 38 1 6.0452 1.2428 -0.0471 39 1 8.3421 1.1316 0.5649 40 1 7.4924 1.0092 2.1302 41 1 7.5740 6.1819 3.8968 42 1 9.1179 6.8209 3.2831 43 1 9.6797 4.7712 5.1430 44 1 10.3290 6.9487 9.0419 45 1 6.6109 2.5540 3.8697 46 1 6.4936 4.3085 4.1805 47 1 5.6876 4.4611 1.6949 48 1 4.5399 3.8652 2.9119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127944382.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:54 Heat of formation + Delta-G solvation = -10.753203 kcal Electronic energy + Delta-G solvation = -29670.901748 eV Core-core repulsion = 25568.962993 eV Total energy + Delta-G solvation = -4101.938755 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.39565 -41.29020 -39.14845 -38.06133 -37.11155 -35.77056 -34.70997 -33.58033 -33.00421 -31.60492 -31.11228 -28.15096 -27.69207 -27.14168 -25.36567 -24.79980 -24.37877 -22.45116 -21.76078 -21.62708 -21.12337 -19.93308 -18.56906 -18.25470 -17.99851 -17.26173 -16.90967 -16.55197 -16.40979 -16.21649 -16.00802 -15.86792 -15.76066 -15.08107 -14.98246 -14.56884 -14.40508 -14.32280 -14.11956 -13.91318 -13.76085 -13.62671 -13.32231 -13.25671 -13.05010 -12.92418 -12.77213 -12.67407 -12.53216 -12.24248 -12.18095 -12.10802 -11.88101 -11.86905 -11.39397 -11.22950 -11.07490 -11.02127 -10.50532 -10.27591 -10.13087 -9.42752 -8.06887 -5.42376 0.76127 1.32282 1.37325 1.42288 1.47225 1.54504 1.73887 1.80666 2.42626 2.98423 3.10961 3.24825 3.30062 3.43527 3.56419 3.65682 3.69514 3.77366 3.91436 3.93328 4.00227 4.06002 4.18160 4.27026 4.29196 4.45400 4.46896 4.55441 4.55921 4.63807 4.68206 4.80528 4.81654 4.86697 4.87727 4.97673 5.00179 5.03090 5.07448 5.15478 5.20890 5.37252 5.69133 5.87761 6.06847 6.15361 6.51926 6.97325 7.20105 7.68180 7.70271 7.88914 9.13376 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018221 B = 0.002434 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.323047 B =11499.672964 C =12096.521325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.398 6.398 3 C 0.068 3.932 4 H 0.117 0.883 5 C -0.166 4.166 6 C 0.512 3.488 7 O -0.567 6.567 8 N -0.710 5.710 9 C 0.146 3.854 10 H 0.080 0.920 11 C -0.115 4.115 12 C -0.023 4.023 13 C 0.181 3.819 14 N -0.336 5.336 15 N -0.332 5.332 16 C 0.177 3.823 17 C 0.245 3.755 18 N -0.751 5.751 19 C -0.230 4.230 20 H 0.075 0.925 21 C -0.050 4.050 22 N -0.973 5.973 23 Si 0.944 3.056 24 H -0.271 1.271 25 H -0.274 1.274 26 H -0.295 1.295 27 N -0.455 5.455 28 C 0.097 3.903 29 C -0.129 4.129 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.052 0.948 36 H 0.417 0.583 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.111 0.889 40 H 0.103 0.897 41 H 0.077 0.923 42 H 0.057 0.943 43 H 0.362 0.638 44 H 0.260 0.740 45 H 0.112 0.888 46 H 0.118 0.882 47 H 0.082 0.918 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.621 -12.353 -20.048 34.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.317 6.317 3 C 0.007 3.993 4 H 0.135 0.865 5 C -0.224 4.224 6 C 0.298 3.702 7 O -0.445 6.445 8 N -0.364 5.364 9 C 0.041 3.959 10 H 0.098 0.902 11 C -0.154 4.154 12 C -0.063 4.063 13 C -0.088 4.088 14 N -0.176 5.176 15 N -0.173 5.173 16 C -0.093 4.093 17 C 0.117 3.883 18 N -0.398 5.398 19 C -0.361 4.361 20 H 0.093 0.907 21 C -0.242 4.242 22 N -0.623 5.623 23 Si 0.772 3.228 24 H -0.197 1.197 25 H -0.200 1.200 26 H -0.221 1.221 27 N -0.145 5.145 28 C -0.025 4.025 29 C -0.167 4.167 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.071 0.929 36 H 0.255 0.745 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.129 0.871 40 H 0.121 0.879 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.194 0.806 44 H 0.069 0.931 45 H 0.130 0.870 46 H 0.137 0.863 47 H 0.101 0.899 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -22.998 -12.884 -20.450 33.363 hybrid contribution -0.281 -0.347 1.134 1.218 sum -23.279 -13.230 -19.316 33.016 Atomic orbital electron populations 1.23068 0.78748 1.04045 1.01448 1.88014 1.21805 1.26699 1.95182 1.22108 0.92408 0.86951 0.97848 0.86548 1.22232 1.04162 1.02487 0.93514 1.20967 0.86842 0.83725 0.78631 1.90726 1.70615 1.31546 1.51627 1.45963 1.20816 1.09831 1.59802 1.20285 0.82613 0.98972 0.93981 0.90183 1.21596 0.92789 1.02721 0.98320 1.20608 0.95512 0.87955 1.02206 1.25325 0.93391 0.97713 0.92394 1.74126 1.14536 1.05056 1.23878 1.74483 1.22582 1.11096 1.09115 1.24884 0.89073 0.94485 1.00827 1.19041 0.98654 0.88952 0.81652 1.42643 1.69487 1.15978 1.11666 1.18974 1.29907 0.95955 0.91215 0.90704 1.25302 1.01805 1.00847 0.96284 1.69832 1.50923 1.36051 1.05512 0.85591 0.78562 0.81336 0.77285 1.19659 1.19987 1.22117 1.46274 1.20543 1.17486 1.30211 1.22756 0.78387 1.06195 0.95149 1.21847 0.99551 0.97352 0.97998 0.92740 0.91920 0.88977 0.89655 0.88768 0.92912 0.74505 0.91247 0.89855 0.87090 0.87882 0.90563 0.92487 0.80606 0.93132 0.86961 0.86339 0.89934 0.85691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.82 113.37 1.23 1.41 16 2 O -0.40 -6.55 9.89 -129.99 -1.29 -7.84 16 3 C 0.07 0.69 3.13 29.85 0.09 0.79 16 4 H 0.12 0.45 7.79 -2.38 -0.02 0.44 16 5 C -0.17 -1.02 9.48 71.98 0.68 -0.34 16 6 C 0.51 7.95 6.93 87.66 0.61 8.56 16 7 O -0.57 -14.80 16.06 15.94 0.26 -14.54 16 8 N -0.71 -6.53 4.86 -449.06 -2.18 -8.71 16 9 C 0.15 1.79 1.95 43.63 0.08 1.88 16 10 H 0.08 1.24 6.90 -2.39 -0.02 1.23 16 11 C -0.11 -1.70 5.14 30.15 0.16 -1.55 16 12 C -0.02 -0.42 6.02 30.45 0.18 -0.23 16 13 C 0.18 4.97 7.03 138.83 0.98 5.94 16 14 N -0.34 -12.30 12.23 -50.01 -0.61 -12.91 16 15 N -0.33 -13.43 12.24 -50.44 -0.62 -14.05 16 16 C 0.18 6.12 7.45 138.12 1.03 7.15 16 17 C 0.24 8.96 6.48 85.63 0.56 9.52 16 18 N -0.75 -34.34 5.40 -347.18 -1.87 -36.21 16 19 C -0.23 -12.50 10.47 84.03 0.88 -11.61 16 20 H 0.08 4.31 8.06 -2.91 -0.02 4.29 16 21 C -0.05 -2.86 5.50 84.86 0.47 -2.39 16 22 N -0.97 -60.41 13.97 21.65 0.30 -60.11 16 23 Si 0.94 45.79 27.74 68.60 1.90 47.69 16 24 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 25 H -0.27 -13.03 6.52 99.48 0.65 -12.38 16 26 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 27 N -0.46 -12.01 2.72 -500.62 -1.36 -13.37 16 28 C 0.10 1.66 6.47 86.40 0.56 2.22 16 29 C -0.13 -1.36 5.09 30.11 0.15 -1.21 16 30 H 0.05 0.31 8.08 -2.39 -0.02 0.29 16 31 H 0.06 0.25 7.87 -2.39 -0.02 0.23 16 32 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 0.30 7.87 -2.39 -0.02 0.28 16 34 H 0.09 0.15 7.92 -2.39 -0.02 0.14 16 35 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.42 1.09 8.40 -92.70 -0.78 0.31 16 37 H 0.07 1.09 7.91 -2.39 -0.02 1.07 16 38 H 0.08 1.32 7.91 -2.38 -0.02 1.30 16 39 H 0.11 1.95 8.14 -2.39 -0.02 1.94 16 40 H 0.10 1.66 7.89 -2.39 -0.02 1.64 16 41 H 0.08 2.36 7.46 -2.38 -0.02 2.34 16 42 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.36 16.89 5.52 -92.71 -0.51 16.38 16 44 H 0.26 15.43 8.31 -92.71 -0.77 14.65 16 45 H 0.11 1.67 7.87 -2.39 -0.02 1.65 16 46 H 0.12 2.13 7.16 -2.39 -0.02 2.11 16 47 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 48 H 0.12 0.73 8.12 -2.39 -0.02 0.71 16 Total: -1.00 -84.41 389.50 1.82 -82.59 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -0.36 Total: 17.31 kcal Atomic # 6 Polarization: 12.49 SS G_CDS: 7.65 Total: 20.14 kcal Atomic # 7 Polarization: -139.01 SS G_CDS: -6.34 Total: -145.35 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -1.03 Total: -22.38 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.90 Total: 47.69 kcal Total: -84.41 1.82 -82.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127944382.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.836 kcal (2) G-P(sol) polarization free energy of solvation -84.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds