Wall clock time and date at job start Tue Mar 31 2020 20:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99972 * 2 1 4 4 H 1.09002 * 109.47382 * 330.00104 * 3 2 1 5 5 C 1.53000 * 109.46726 * 90.00358 * 3 2 1 6 6 C 1.50699 * 109.47184 * 210.00106 * 3 2 1 7 7 O 1.21277 * 119.99833 * 0.02562 * 6 3 2 8 8 N 1.34773 * 120.00068 * 180.02562 * 6 3 2 9 9 C 1.46500 * 119.99996 * 179.97438 * 8 6 3 10 10 H 1.09003 * 107.88092 * 321.54933 * 9 8 6 11 11 C 1.50952 * 108.02754 * 78.06841 * 9 8 6 12 12 C 1.53669 * 110.95737 * 194.28121 * 11 9 8 13 13 C 1.51886 * 106.90463 * 280.92133 * 12 11 9 14 14 N 1.29900 * 127.79786 * 245.25937 * 13 12 11 15 15 N 1.29025 * 109.22162 * 179.66306 * 14 13 12 16 16 C 1.30971 * 109.70975 * 0.06403 * 15 14 13 17 17 C 1.50700 * 126.60998 * 180.12620 * 16 15 14 18 18 N 1.46505 * 109.47220 * 269.95979 * 17 16 15 19 19 C 1.36932 * 119.99843 * 180.02562 * 18 17 16 20 20 H 1.08003 * 120.00585 * 359.97438 * 19 18 17 21 21 C 1.38815 * 120.00113 * 179.97438 * 19 18 17 22 22 N 1.31622 * 119.99620 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00377 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47120 * 89.99980 * 23 21 19 25 25 H 1.48503 * 109.47183 * 209.99993 * 23 21 19 26 26 H 1.48497 * 109.47233 * 329.99911 * 23 21 19 27 27 N 1.34593 * 124.58317 * 65.09835 * 13 12 11 28 28 C 1.47501 * 125.02818 * 0.49356 * 27 13 12 29 29 C 1.50867 * 108.02978 * 204.99872 * 9 8 6 30 30 H 1.09003 * 109.47264 * 59.99735 * 1 2 3 31 31 H 1.08994 * 109.47245 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46765 * 300.00001 * 1 2 3 33 33 H 1.09004 * 109.46724 * 180.02562 * 5 3 2 34 34 H 1.09001 * 109.47194 * 299.99575 * 5 3 2 35 35 H 1.08992 * 109.47399 * 59.99748 * 5 3 2 36 36 H 0.96998 * 119.99906 * 359.97438 * 8 6 3 37 37 H 1.08996 * 109.18423 * 314.65870 * 11 9 8 38 38 H 1.08997 * 109.18681 * 73.90506 * 11 9 8 39 39 H 1.08998 * 109.97112 * 161.56904 * 12 11 9 40 40 H 1.09003 * 110.03005 * 40.30387 * 12 11 9 41 41 H 1.08999 * 109.47683 * 29.95995 * 17 16 15 42 42 H 1.09001 * 109.47302 * 149.96119 * 17 16 15 43 43 H 0.96994 * 120.00056 * 359.97438 * 18 17 16 44 44 H 0.97005 * 119.99836 * 179.97438 * 22 21 19 45 45 H 1.08999 * 109.93417 * 174.66365 * 28 27 13 46 46 H 1.09005 * 109.92710 * 53.45303 * 28 27 13 47 47 H 1.09006 * 109.14219 * 285.97733 * 29 9 8 48 48 H 1.08994 * 109.14519 * 45.12505 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.3386 1.2639 -0.7104 7 8 3.7471 0.2194 -1.1717 8 7 4.0726 2.3876 -0.8331 9 6 5.3643 2.3471 -1.5232 10 1 5.8564 1.4114 -1.2577 11 6 5.0996 2.3296 -3.0093 12 6 6.3638 1.9342 -3.7882 13 6 7.2438 3.1702 -3.8587 14 7 7.5853 3.8451 -4.9147 15 7 8.3360 4.8337 -4.5627 16 6 8.5010 4.8222 -3.2634 17 6 9.3051 5.8041 -2.4509 18 7 10.6858 5.3280 -2.3361 19 6 11.6069 6.0610 -1.6366 20 1 11.3157 6.9905 -1.1699 21 6 12.9151 5.6096 -1.5273 22 7 13.2699 4.4767 -2.0956 23 14 14.1718 6.6100 -0.5738 24 1 14.1683 6.1830 0.8484 25 1 15.5215 6.3908 -1.1531 26 1 13.8247 8.0513 -0.6588 27 7 7.8131 3.7644 -2.7937 28 6 7.6820 3.3060 -1.3979 29 6 6.2085 3.4832 -1.0012 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.6606 2.7673 1.4425 34 1 1.2569 1.8014 1.9564 35 1 2.8829 1.0774 1.9563 36 1 3.7457 3.2231 -0.4645 37 1 4.3078 1.6118 -3.2237 38 1 4.7785 3.3214 -3.3276 39 1 6.0955 1.6104 -4.7938 40 1 6.8882 1.1332 -3.2669 41 1 9.2959 6.7766 -2.9431 42 1 8.8686 5.8962 -1.4563 43 1 10.9473 4.4931 -2.7548 44 1 14.1841 4.1614 -2.0196 45 1 8.3169 3.9080 -0.7478 46 1 7.9630 2.2553 -1.3239 47 1 5.8379 4.4222 -1.4125 48 1 6.1321 3.5152 0.0856 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127944383.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:57 Heat of formation + Delta-G solvation = 12.825174 kcal Electronic energy + Delta-G solvation = -29576.954834 eV Core-core repulsion = 25476.038513 eV Total energy + Delta-G solvation = -4100.916320 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.01178 -40.61190 -38.50869 -37.24450 -35.20622 -34.64331 -33.59503 -32.34503 -31.48255 -30.80030 -29.36757 -27.30503 -26.55063 -25.88356 -24.27748 -24.25398 -22.88077 -21.36316 -20.89335 -20.59122 -19.95390 -17.95750 -17.50449 -17.43898 -16.99153 -16.46453 -15.81486 -15.64927 -15.30574 -15.11668 -14.90414 -14.77510 -14.30873 -14.03227 -13.80168 -13.69255 -13.30645 -13.19154 -12.98882 -12.94794 -12.80217 -12.55534 -12.44040 -12.27547 -11.94552 -11.76848 -11.68229 -11.54363 -11.16588 -11.06244 -10.92639 -10.87375 -10.49616 -10.18811 -10.03321 -9.94086 -9.89509 -9.78376 -9.52184 -9.01338 -8.68673 -7.08437 -5.84929 -3.17326 2.13300 2.22211 2.37708 2.70390 3.22764 3.38571 3.44332 3.45045 3.46638 4.05996 4.16999 4.32807 4.34047 4.39057 4.47376 4.51739 4.54446 4.76430 4.78289 4.86740 4.87216 4.92793 4.96771 5.06877 5.09459 5.15266 5.20713 5.29099 5.33304 5.40166 5.51453 5.53746 5.64797 5.71934 5.77465 5.86729 5.94955 6.02411 6.18310 6.28645 6.50306 6.53323 6.57627 7.05088 7.15662 7.59627 7.82000 8.30143 9.13361 9.42727 9.93501 10.29707 11.37058 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018243 B = 0.002314 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.432730 B =12095.822356 C =13032.115152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.069 3.931 4 H 0.087 0.913 5 C -0.172 4.172 6 C 0.514 3.486 7 O -0.513 6.513 8 N -0.728 5.728 9 C 0.146 3.854 10 H 0.087 0.913 11 C -0.126 4.126 12 C -0.023 4.023 13 C 0.159 3.841 14 N -0.296 5.296 15 N -0.294 5.294 16 C 0.193 3.807 17 C 0.237 3.763 18 N -0.724 5.724 19 C -0.248 4.248 20 H 0.075 0.925 21 C -0.009 4.009 22 N -0.928 5.928 23 Si 0.912 3.088 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.280 1.280 27 N -0.462 5.462 28 C 0.111 3.889 29 C -0.142 4.142 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.400 0.600 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.057 0.943 42 H 0.036 0.964 43 H 0.387 0.613 44 H 0.257 0.743 45 H 0.118 0.882 46 H 0.098 0.902 47 H 0.080 0.920 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.894 -5.875 8.242 29.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.007 3.993 4 H 0.105 0.895 5 C -0.229 4.229 6 C 0.299 3.701 7 O -0.387 6.387 8 N -0.382 5.382 9 C 0.042 3.958 10 H 0.105 0.895 11 C -0.165 4.165 12 C -0.063 4.063 13 C -0.109 4.109 14 N -0.136 5.136 15 N -0.134 5.134 16 C -0.075 4.075 17 C 0.107 3.893 18 N -0.370 5.370 19 C -0.378 4.378 20 H 0.093 0.907 21 C -0.206 4.206 22 N -0.575 5.575 23 Si 0.742 3.258 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.206 1.206 27 N -0.153 5.153 28 C -0.013 4.013 29 C -0.181 4.181 30 H 0.062 0.938 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.234 0.766 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.122 0.878 40 H 0.107 0.893 41 H 0.074 0.926 42 H 0.054 0.946 43 H 0.221 0.779 44 H 0.067 0.933 45 H 0.136 0.864 46 H 0.116 0.884 47 H 0.099 0.901 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -27.290 -6.265 6.555 28.757 hybrid contribution 0.394 0.493 1.876 1.980 sum -26.895 -5.771 8.432 28.771 Atomic orbital electron populations 1.22897 0.80441 1.03421 1.00056 1.88062 1.19794 1.24961 1.94911 1.21945 0.93490 0.87092 0.96759 0.89482 1.22249 1.03615 1.02023 0.95041 1.20395 0.86016 0.83892 0.79827 1.90750 1.70822 1.30133 1.46961 1.46184 1.21331 1.11329 1.59361 1.20391 0.83226 1.00299 0.91858 0.89532 1.21692 0.98171 1.03155 0.93496 1.20354 0.92301 0.90556 1.03118 1.24627 1.01887 1.00324 0.84056 1.74193 1.12286 1.03562 1.23572 1.74573 1.14334 1.15732 1.08726 1.25247 0.97987 0.91731 0.92511 1.19051 0.84761 0.91736 0.93733 1.42295 1.03246 1.27029 1.64466 1.19172 0.89798 1.03220 1.25631 0.90739 1.24799 0.97365 0.97520 1.00866 1.69685 1.18279 1.21457 1.48089 0.86129 0.81034 0.79368 0.79231 1.21642 1.21668 1.20569 1.46037 1.37701 1.22419 1.09186 1.22298 0.96652 1.02792 0.79551 1.21924 0.94215 0.99221 1.02732 0.93762 0.89016 0.93779 0.90884 0.91134 0.90888 0.76604 0.89717 0.91182 0.87766 0.89342 0.92583 0.94607 0.77916 0.93297 0.86417 0.88384 0.90137 0.88544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.24 16 2 O -0.36 -3.29 9.88 -55.14 -0.54 -3.83 16 3 C 0.07 0.46 3.14 -27.88 -0.09 0.37 16 4 H 0.09 0.37 7.79 -51.93 -0.40 -0.03 16 5 C -0.17 -0.77 9.42 37.16 0.35 -0.42 16 6 C 0.51 4.71 6.84 -10.99 -0.08 4.64 16 7 O -0.51 -7.08 15.61 -14.35 -0.22 -7.30 16 8 N -0.73 -4.83 4.89 -55.87 -0.27 -5.10 16 9 C 0.15 1.20 1.90 -70.03 -0.13 1.07 16 10 H 0.09 0.83 7.13 -51.93 -0.37 0.46 16 11 C -0.13 -1.19 5.09 -27.41 -0.14 -1.33 16 12 C -0.02 -0.26 6.02 -26.95 -0.16 -0.42 16 13 C 0.16 2.48 7.03 -155.75 -1.09 1.39 16 14 N -0.30 -5.81 12.23 32.84 0.40 -5.41 16 15 N -0.29 -6.30 12.24 32.71 0.40 -5.90 16 16 C 0.19 3.68 7.45 -155.39 -1.16 2.52 16 17 C 0.24 4.72 6.48 -5.19 -0.03 4.68 16 18 N -0.72 -18.08 5.59 -61.08 -0.34 -18.42 16 19 C -0.25 -6.68 9.99 -15.06 -0.15 -6.83 16 20 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 21 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 22 N -0.93 -27.85 13.06 55.49 0.72 -27.13 16 23 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 N -0.46 -7.05 2.72 -109.59 -0.30 -7.35 16 28 C 0.11 1.22 6.47 -3.17 -0.02 1.20 16 29 C -0.14 -1.09 5.05 -27.48 -0.14 -1.23 16 30 H 0.04 0.19 8.09 -51.93 -0.42 -0.23 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.04 0.15 7.87 -51.93 -0.41 -0.26 16 33 H 0.07 0.19 7.56 -51.93 -0.39 -0.21 16 34 H 0.07 0.24 7.87 -51.93 -0.41 -0.17 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.40 1.50 7.95 -40.82 -0.32 1.18 16 37 H 0.08 0.84 7.23 -51.93 -0.38 0.47 16 38 H 0.07 0.70 7.91 -51.93 -0.41 0.29 16 39 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.09 0.91 7.89 -51.93 -0.41 0.50 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.04 0.63 7.46 -51.93 -0.39 0.25 16 43 H 0.39 10.62 7.66 -40.82 -0.31 10.31 16 44 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.12 1.37 7.16 -51.93 -0.37 1.00 16 46 H 0.10 1.00 7.87 -51.93 -0.41 0.59 16 47 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 48 H 0.10 0.53 8.12 -51.93 -0.42 0.11 16 LS Contribution 390.65 15.07 5.89 5.89 Total: -1.00 -37.28 390.65 -8.62 -45.90 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -7.48 Total: 5.31 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: -1.85 Total: 6.53 kcal Atomic # 7 Polarization: -69.92 SS G_CDS: 0.61 Total: -69.31 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: -0.77 Total: -11.13 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.28 -8.62 -45.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127944383.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.722 kcal (2) G-P(sol) polarization free energy of solvation -37.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds