Wall clock time and date at job start Tue Mar 31 2020 20:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99972 * 2 1 4 4 H 1.09002 * 109.47382 * 330.00104 * 3 2 1 5 5 C 1.53000 * 109.46726 * 90.00358 * 3 2 1 6 6 C 1.50699 * 109.47184 * 210.00106 * 3 2 1 7 7 O 1.21277 * 119.99833 * 0.02562 * 6 3 2 8 8 N 1.34773 * 120.00068 * 180.02562 * 6 3 2 9 9 C 1.46500 * 119.99996 * 179.97438 * 8 6 3 10 10 H 1.09003 * 107.88092 * 321.54933 * 9 8 6 11 11 C 1.50952 * 108.02754 * 78.06841 * 9 8 6 12 12 C 1.53669 * 110.95737 * 194.28121 * 11 9 8 13 13 C 1.51886 * 106.90463 * 280.92133 * 12 11 9 14 14 N 1.29900 * 127.79786 * 245.25937 * 13 12 11 15 15 N 1.29025 * 109.22162 * 179.66306 * 14 13 12 16 16 C 1.30971 * 109.70975 * 0.06403 * 15 14 13 17 17 C 1.50700 * 126.60998 * 180.12620 * 16 15 14 18 18 N 1.46505 * 109.47220 * 269.95979 * 17 16 15 19 19 C 1.36932 * 119.99843 * 180.02562 * 18 17 16 20 20 H 1.08003 * 120.00585 * 359.97438 * 19 18 17 21 21 C 1.38815 * 120.00113 * 179.97438 * 19 18 17 22 22 N 1.31622 * 119.99620 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00377 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47120 * 89.99980 * 23 21 19 25 25 H 1.48503 * 109.47183 * 209.99993 * 23 21 19 26 26 H 1.48497 * 109.47233 * 329.99911 * 23 21 19 27 27 N 1.34593 * 124.58317 * 65.09835 * 13 12 11 28 28 C 1.47501 * 125.02818 * 0.49356 * 27 13 12 29 29 C 1.50867 * 108.02978 * 204.99872 * 9 8 6 30 30 H 1.09003 * 109.47264 * 59.99735 * 1 2 3 31 31 H 1.08994 * 109.47245 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46765 * 300.00001 * 1 2 3 33 33 H 1.09004 * 109.46724 * 180.02562 * 5 3 2 34 34 H 1.09001 * 109.47194 * 299.99575 * 5 3 2 35 35 H 1.08992 * 109.47399 * 59.99748 * 5 3 2 36 36 H 0.96998 * 119.99906 * 359.97438 * 8 6 3 37 37 H 1.08996 * 109.18423 * 314.65870 * 11 9 8 38 38 H 1.08997 * 109.18681 * 73.90506 * 11 9 8 39 39 H 1.08998 * 109.97112 * 161.56904 * 12 11 9 40 40 H 1.09003 * 110.03005 * 40.30387 * 12 11 9 41 41 H 1.08999 * 109.47683 * 29.95995 * 17 16 15 42 42 H 1.09001 * 109.47302 * 149.96119 * 17 16 15 43 43 H 0.96994 * 120.00056 * 359.97438 * 18 17 16 44 44 H 0.97005 * 119.99836 * 179.97438 * 22 21 19 45 45 H 1.08999 * 109.93417 * 174.66365 * 28 27 13 46 46 H 1.09005 * 109.92710 * 53.45303 * 28 27 13 47 47 H 1.09006 * 109.14219 * 285.97733 * 29 9 8 48 48 H 1.08994 * 109.14519 * 45.12505 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.3386 1.2639 -0.7104 7 8 3.7471 0.2194 -1.1717 8 7 4.0726 2.3876 -0.8331 9 6 5.3643 2.3471 -1.5232 10 1 5.8564 1.4114 -1.2577 11 6 5.0996 2.3296 -3.0093 12 6 6.3638 1.9342 -3.7882 13 6 7.2438 3.1702 -3.8587 14 7 7.5853 3.8451 -4.9147 15 7 8.3360 4.8337 -4.5627 16 6 8.5010 4.8222 -3.2634 17 6 9.3051 5.8041 -2.4509 18 7 10.6858 5.3280 -2.3361 19 6 11.6069 6.0610 -1.6366 20 1 11.3157 6.9905 -1.1699 21 6 12.9151 5.6096 -1.5273 22 7 13.2699 4.4767 -2.0956 23 14 14.1718 6.6100 -0.5738 24 1 14.1683 6.1830 0.8484 25 1 15.5215 6.3908 -1.1531 26 1 13.8247 8.0513 -0.6588 27 7 7.8131 3.7644 -2.7937 28 6 7.6820 3.3060 -1.3979 29 6 6.2085 3.4832 -1.0012 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.6606 2.7673 1.4425 34 1 1.2569 1.8014 1.9564 35 1 2.8829 1.0774 1.9563 36 1 3.7457 3.2231 -0.4645 37 1 4.3078 1.6118 -3.2237 38 1 4.7785 3.3214 -3.3276 39 1 6.0955 1.6104 -4.7938 40 1 6.8882 1.1332 -3.2669 41 1 9.2959 6.7766 -2.9431 42 1 8.8686 5.8962 -1.4563 43 1 10.9473 4.4931 -2.7548 44 1 14.1841 4.1614 -2.0196 45 1 8.3169 3.9080 -0.7478 46 1 7.9630 2.2553 -1.3239 47 1 5.8379 4.4222 -1.4125 48 1 6.1321 3.5152 0.0856 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127944383.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:56 Heat of formation + Delta-G solvation = -13.813636 kcal Electronic energy + Delta-G solvation = -29578.109979 eV Core-core repulsion = 25476.038513 eV Total energy + Delta-G solvation = -4102.071466 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.34597 -41.29459 -39.13781 -38.04054 -36.91720 -35.73589 -34.71176 -33.37820 -32.93707 -31.56430 -30.83552 -27.89296 -27.68194 -27.10154 -25.41138 -24.81416 -24.72178 -22.39853 -21.69769 -21.59997 -21.07080 -19.39935 -18.53405 -18.26038 -17.95814 -17.29936 -16.89553 -16.59787 -16.32287 -16.12570 -15.88819 -15.79908 -15.67597 -15.10858 -15.04100 -14.56108 -14.35521 -14.29726 -14.03830 -13.86499 -13.58805 -13.46780 -13.29218 -13.10483 -12.92948 -12.77265 -12.74983 -12.67314 -12.50507 -12.18986 -12.11161 -12.09248 -11.89890 -11.89024 -11.36022 -11.19595 -11.00629 -10.99393 -10.50055 -10.23355 -10.09551 -9.11275 -7.96600 -5.29433 0.81514 1.49547 1.52444 1.52807 1.56212 1.61068 1.76797 1.83057 2.56994 2.99204 3.14650 3.35995 3.38561 3.45644 3.58400 3.68031 3.78692 3.91647 3.94122 3.99524 4.06430 4.08146 4.19654 4.28555 4.30335 4.46146 4.47632 4.55714 4.58236 4.65605 4.70523 4.82250 4.82856 4.87097 4.87965 4.98125 5.01565 5.07189 5.08710 5.19160 5.23055 5.37843 5.49083 5.92745 6.07909 6.20249 6.53081 7.21245 7.28205 7.72601 7.93428 8.20445 9.26689 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018243 B = 0.002314 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.432730 B =12095.822356 C =13032.115152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.398 6.398 3 C 0.067 3.933 4 H 0.115 0.885 5 C -0.167 4.167 6 C 0.511 3.489 7 O -0.567 6.567 8 N -0.710 5.710 9 C 0.149 3.851 10 H 0.076 0.924 11 C -0.115 4.115 12 C -0.022 4.022 13 C 0.178 3.822 14 N -0.338 5.338 15 N -0.336 5.336 16 C 0.182 3.818 17 C 0.241 3.759 18 N -0.737 5.737 19 C -0.244 4.244 20 H 0.090 0.910 21 C -0.075 4.075 22 N -0.971 5.971 23 Si 0.980 3.020 24 H -0.282 1.282 25 H -0.302 1.302 26 H -0.266 1.266 27 N -0.454 5.454 28 C 0.100 3.900 29 C -0.128 4.128 30 H 0.053 0.947 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.418 0.582 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.109 0.891 40 H 0.101 0.899 41 H 0.052 0.948 42 H 0.071 0.929 43 H 0.370 0.630 44 H 0.251 0.749 45 H 0.116 0.884 46 H 0.108 0.892 47 H 0.082 0.918 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.986 -4.767 10.610 32.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.317 6.317 3 C 0.007 3.993 4 H 0.133 0.867 5 C -0.224 4.224 6 C 0.297 3.703 7 O -0.444 6.444 8 N -0.364 5.364 9 C 0.044 3.956 10 H 0.094 0.906 11 C -0.154 4.154 12 C -0.062 4.062 13 C -0.091 4.091 14 N -0.178 5.178 15 N -0.177 5.177 16 C -0.088 4.088 17 C 0.113 3.887 18 N -0.381 5.381 19 C -0.375 4.375 20 H 0.108 0.892 21 C -0.267 4.267 22 N -0.621 5.621 23 Si 0.809 3.191 24 H -0.208 1.208 25 H -0.229 1.229 26 H -0.190 1.190 27 N -0.144 5.144 28 C -0.021 4.021 29 C -0.166 4.166 30 H 0.071 0.929 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.255 0.745 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.128 0.872 40 H 0.119 0.881 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.201 0.799 44 H 0.060 0.940 45 H 0.134 0.866 46 H 0.126 0.874 47 H 0.101 0.899 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -29.451 -5.085 8.971 31.204 hybrid contribution 0.914 0.108 1.114 1.445 sum -28.537 -4.978 10.086 30.674 Atomic orbital electron populations 1.23062 0.78768 1.04042 1.01408 1.88011 1.21801 1.26699 1.95182 1.22119 0.92314 0.86914 0.97999 0.86725 1.22249 1.04212 1.02633 0.93323 1.20979 0.86814 0.83427 0.79063 1.90727 1.72185 1.32139 1.49368 1.45974 1.20381 1.11665 1.58387 1.20253 0.84057 1.00137 0.91129 0.90552 1.21580 0.96869 1.02801 0.94174 1.20578 0.92464 0.88955 1.04176 1.25302 1.00438 1.00157 0.83241 1.74095 1.13755 1.04416 1.25495 1.74454 1.15655 1.17257 1.10300 1.24949 0.98814 0.92944 0.92060 1.19097 0.82686 0.91505 0.95381 1.42450 1.05141 1.26333 1.64136 1.19648 0.90164 1.03321 1.24344 0.89197 1.25672 0.99600 0.98781 1.02646 1.69863 1.18208 1.23562 1.50490 0.85043 0.77706 0.78515 0.77847 1.20827 1.22911 1.19041 1.46222 1.36340 1.21099 1.10743 1.22676 0.99149 1.03168 0.77123 1.21832 0.91390 0.98758 1.04589 0.92869 0.88957 0.91860 0.88478 0.89736 0.92756 0.74474 0.89915 0.91379 0.87225 0.88094 0.93049 0.91168 0.79861 0.94042 0.86623 0.87434 0.89917 0.85332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.82 113.37 1.23 1.43 16 2 O -0.40 -6.82 9.88 -129.94 -1.28 -8.10 16 3 C 0.07 0.74 3.14 29.85 0.09 0.83 16 4 H 0.12 0.58 7.79 -2.39 -0.02 0.56 16 5 C -0.17 -1.01 9.42 71.98 0.68 -0.33 16 6 C 0.51 8.46 6.84 87.66 0.60 9.06 16 7 O -0.57 -15.37 15.61 16.02 0.25 -15.12 16 8 N -0.71 -7.36 4.89 -449.06 -2.19 -9.55 16 9 C 0.15 2.09 1.90 43.63 0.08 2.17 16 10 H 0.08 1.32 7.13 -2.39 -0.02 1.30 16 11 C -0.11 -1.98 5.09 30.15 0.15 -1.83 16 12 C -0.02 -0.46 6.02 30.45 0.18 -0.28 16 13 C 0.18 5.46 7.03 138.83 0.98 6.44 16 14 N -0.34 -13.47 12.23 -50.00 -0.61 -14.08 16 15 N -0.34 -14.73 12.24 -50.44 -0.62 -15.34 16 16 C 0.18 6.90 7.45 138.12 1.03 7.93 16 17 C 0.24 9.43 6.48 85.63 0.56 9.99 16 18 N -0.74 -36.78 5.59 -347.16 -1.94 -38.72 16 19 C -0.24 -12.97 9.99 84.04 0.84 -12.13 16 20 H 0.09 4.42 7.83 -2.91 -0.02 4.39 16 21 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 22 N -0.97 -59.38 13.06 21.65 0.28 -59.10 16 23 Si 0.98 44.79 29.55 68.60 2.03 46.81 16 24 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 25 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 27 N -0.45 -13.42 2.72 -500.64 -1.36 -14.78 16 28 C 0.10 2.01 6.47 86.40 0.56 2.57 16 29 C -0.13 -1.54 5.05 30.11 0.15 -1.39 16 30 H 0.05 0.35 8.09 -2.39 -0.02 0.33 16 31 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.28 7.87 -2.39 -0.02 0.26 16 33 H 0.10 0.09 7.56 -2.39 -0.02 0.07 16 34 H 0.08 0.30 7.87 -2.39 -0.02 0.28 16 35 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.42 1.44 7.95 -92.71 -0.74 0.71 16 37 H 0.08 1.54 7.23 -2.39 -0.02 1.52 16 38 H 0.07 1.23 7.91 -2.39 -0.02 1.21 16 39 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.10 1.96 7.89 -2.39 -0.02 1.94 16 41 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.07 2.29 7.46 -2.39 -0.02 2.27 16 43 H 0.37 20.75 7.66 -92.71 -0.71 20.04 16 44 H 0.25 14.93 8.31 -92.70 -0.77 14.15 16 45 H 0.12 2.42 7.16 -2.39 -0.02 2.41 16 46 H 0.11 1.98 7.87 -2.38 -0.02 1.97 16 47 H 0.08 1.06 8.08 -2.38 -0.02 1.04 16 48 H 0.13 0.83 8.12 -2.39 -0.02 0.81 16 Total: -1.00 -84.05 390.65 1.69 -82.36 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: -0.46 Total: 24.91 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: 7.59 Total: 20.72 kcal Atomic # 7 Polarization: -145.14 SS G_CDS: -6.44 Total: -151.58 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -1.03 Total: -23.23 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -84.05 1.69 -82.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127944383.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.544 kcal (2) G-P(sol) polarization free energy of solvation -84.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds