Wall clock time and date at job start Tue Mar 31 2020 19:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99592 * 2 1 4 4 C 1.52999 * 109.47245 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47174 * 55.00350 * 4 3 2 6 6 C 1.53002 * 109.47373 * 295.00008 * 4 3 2 7 7 C 1.53008 * 109.47413 * 174.99778 * 4 3 2 8 8 C 1.50702 * 109.47093 * 184.99943 * 7 4 3 9 9 O 1.21277 * 120.00039 * 0.02562 * 8 7 4 10 10 N 1.34776 * 119.99544 * 179.97438 * 8 7 4 11 11 C 1.46502 * 119.99680 * 180.02562 * 10 8 7 12 12 H 1.09002 * 110.64535 * 36.68666 * 11 10 8 13 13 C 1.54330 * 110.71994 * 273.54692 * 11 10 8 14 14 N 1.47017 * 107.26959 * 219.44412 * 13 11 10 15 15 C 1.36937 * 125.64487 * 178.90596 * 14 13 11 16 16 H 1.08007 * 119.99767 * 174.91033 * 15 14 13 17 17 C 1.38812 * 120.00336 * 354.90564 * 15 14 13 18 18 N 1.31622 * 119.99769 * 7.06483 * 17 15 14 19 19 Si 1.86792 * 120.00139 * 187.06897 * 17 15 14 20 20 H 1.48498 * 109.47583 * 94.98526 * 19 17 15 21 21 H 1.48507 * 109.46981 * 214.98560 * 19 17 15 22 22 H 1.48502 * 109.47265 * 334.98316 * 19 17 15 23 23 C 1.47418 * 108.70500 * 358.94120 * 14 13 11 24 24 C 1.54908 * 104.83341 * 24.12618 * 23 14 13 25 25 H 1.09005 * 111.00402 * 204.91516 * 24 23 14 26 26 N 1.46497 * 111.00360 * 81.06918 * 24 23 14 27 27 C 1.35320 * 125.86533 * 332.79995 * 26 24 23 28 28 C 1.35352 * 106.17332 * 179.97438 * 27 26 24 29 29 N 1.33776 * 106.49604 * 0.02562 * 28 27 26 30 30 N 1.28634 * 108.88834 * 359.72891 * 29 28 27 31 31 H 1.09003 * 109.46530 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47133 * 299.99488 * 1 2 3 33 33 H 1.08992 * 109.47250 * 60.00160 * 1 2 3 34 34 H 1.09003 * 109.47741 * 59.99901 * 3 2 1 35 35 H 1.08998 * 109.47458 * 299.99935 * 3 2 1 36 36 H 1.09000 * 109.46786 * 300.00031 * 6 4 3 37 37 H 1.09004 * 109.47282 * 179.97438 * 6 4 3 38 38 H 1.09000 * 109.46380 * 59.99729 * 6 4 3 39 39 H 1.08997 * 109.46909 * 305.00546 * 7 4 3 40 40 H 1.09000 * 109.46508 * 65.00301 * 7 4 3 41 41 H 0.96998 * 120.00355 * 0.02562 * 10 8 7 42 42 H 1.08997 * 109.87684 * 338.86268 * 13 11 10 43 43 H 1.08998 * 109.88364 * 100.02439 * 13 11 10 44 44 H 0.96998 * 119.99706 * 180.02562 * 18 17 15 45 45 H 1.09004 * 110.36844 * 142.96694 * 23 14 13 46 46 H 1.09001 * 110.36888 * 265.28849 * 23 14 13 47 47 H 1.07994 * 126.91518 * 0.02843 * 27 26 24 48 48 H 1.08000 * 126.75300 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 1 3.8514 0.5684 -0.8410 6 6 3.9952 0.5371 1.3083 7 6 4.1572 2.5771 -0.1251 8 6 5.6538 2.4496 -0.2480 9 8 6.1719 1.3531 -0.2366 10 7 6.4163 3.5541 -0.3716 11 6 7.8711 3.4301 -0.4916 12 1 8.1347 2.5522 -1.0814 13 6 8.5308 3.3694 0.9023 14 7 9.7690 4.1590 0.8339 15 6 10.6371 4.3733 1.8711 16 1 11.5638 4.9009 1.6994 17 6 10.3260 3.9128 3.1431 18 7 9.2680 3.1517 3.3269 19 14 11.4089 4.3732 4.5938 20 1 10.8449 5.5671 5.2733 21 1 11.4633 3.2387 5.5506 22 1 12.7794 4.6797 4.1110 23 6 9.9209 4.6823 -0.5358 24 6 8.4824 4.7152 -1.1096 25 1 8.4945 4.6576 -2.1981 26 7 7.7637 5.9088 -0.6571 27 6 7.9956 6.5861 0.4912 28 6 7.1125 7.6117 0.5089 29 7 6.3927 7.5126 -0.6143 30 7 6.8066 6.4966 -1.2859 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.6885 1.8465 0.8900 35 1 1.6885 1.8464 -0.8900 36 1 3.6791 1.1535 2.1498 37 1 5.0818 0.4507 1.3085 38 1 3.5522 -0.4548 1.3978 39 1 3.7608 3.0734 -1.0109 40 1 3.9141 3.1648 0.7601 41 1 6.0018 4.4310 -0.3811 42 1 7.8601 3.7954 1.6485 43 1 8.7638 2.3356 1.1575 44 1 9.0505 2.8302 4.2158 45 1 10.3435 5.6869 -0.5135 46 1 10.5505 4.0183 -1.1281 47 1 8.7368 6.3553 1.2420 48 1 7.0093 8.3624 1.2785 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129359644.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:30 Heat of formation + Delta-G solvation = 50.254144 kcal Electronic energy + Delta-G solvation = -30626.927879 eV Core-core repulsion = 26527.634601 eV Total energy + Delta-G solvation = -4099.293278 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.95607 -39.84802 -38.37630 -37.75658 -34.71501 -34.13002 -33.41418 -31.77498 -30.55864 -29.33923 -28.24256 -27.45668 -26.96578 -25.53183 -24.80363 -22.70729 -22.21525 -21.35202 -20.35203 -20.00505 -19.75575 -17.77584 -17.25400 -16.97332 -16.37887 -16.14818 -15.83715 -15.34206 -15.25231 -14.96593 -14.59787 -14.46217 -14.18678 -13.96822 -13.58086 -13.46676 -13.14471 -12.93409 -12.51800 -12.40981 -12.26826 -12.10836 -11.80958 -11.67671 -11.38891 -11.33572 -11.10911 -11.04146 -10.91546 -10.85545 -10.68764 -10.63364 -10.54793 -10.24131 -10.00876 -9.82074 -9.77141 -9.49093 -8.97108 -8.84835 -8.67703 -7.15820 -5.94061 -3.32588 1.98652 2.62834 2.89690 2.91724 3.24067 3.27932 3.33958 3.36703 3.73691 4.28356 4.50426 4.72235 4.73753 4.82143 4.93992 4.95853 5.06470 5.11332 5.12070 5.24681 5.29820 5.31333 5.35908 5.42205 5.43684 5.54064 5.60377 5.72991 5.78090 5.79504 5.82569 5.89569 6.04967 6.13608 6.17186 6.22640 6.34901 6.51821 6.54140 6.70367 7.00538 7.03939 7.26994 7.34014 7.60968 7.71784 7.96046 8.47979 8.84585 8.93924 9.54026 10.14046 11.15858 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010683 B = 0.003561 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.272630 B = 7860.741037 C = 9370.888042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.065 3.935 4 C -0.071 4.071 5 H 0.086 0.914 6 C -0.150 4.150 7 C -0.136 4.136 8 C 0.519 3.481 9 O -0.529 6.529 10 N -0.718 5.718 11 C 0.112 3.888 12 H 0.110 0.890 13 C 0.168 3.832 14 N -0.602 5.602 15 C -0.247 4.247 16 H 0.083 0.917 17 C 0.004 3.996 18 N -0.909 5.909 19 Si 0.912 3.088 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.128 3.872 24 C 0.114 3.886 25 H 0.119 0.881 26 N -0.276 5.276 27 C -0.003 4.003 28 C -0.076 4.076 29 N -0.278 5.278 30 N -0.111 5.111 31 H 0.084 0.916 32 H 0.040 0.960 33 H 0.039 0.961 34 H 0.050 0.950 35 H 0.048 0.952 36 H 0.045 0.955 37 H 0.079 0.921 38 H 0.057 0.943 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.397 0.603 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.256 0.744 45 H 0.059 0.941 46 H 0.054 0.946 47 H 0.204 0.796 48 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.222 1.039 -7.077 13.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.011 4.011 4 C -0.090 4.090 5 H 0.105 0.895 6 C -0.207 4.207 7 C -0.176 4.176 8 C 0.305 3.695 9 O -0.405 6.405 10 N -0.371 5.371 11 C 0.005 3.995 12 H 0.127 0.873 13 C 0.042 3.958 14 N -0.329 5.329 15 C -0.374 4.374 16 H 0.101 0.899 17 C -0.194 4.194 18 N -0.554 5.554 19 Si 0.742 3.258 20 H -0.213 1.213 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.000 4.000 24 C 0.010 3.990 25 H 0.137 0.863 26 N -0.069 5.069 27 C -0.155 4.155 28 C -0.233 4.233 29 N -0.144 5.144 30 N -0.091 5.091 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.232 0.768 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.221 0.779 48 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -11.615 -0.022 -8.099 14.159 hybrid contribution 0.860 0.862 1.836 2.203 sum -10.754 0.840 -6.263 12.474 Atomic orbital electron populations 1.22725 0.81342 1.02618 0.99831 1.87896 1.19330 1.27984 1.95363 1.22618 0.93939 0.84559 1.00018 1.20797 0.91706 0.95202 1.01315 0.89525 1.21895 1.03613 1.00304 0.94862 1.21633 0.92596 0.99098 1.04294 1.20398 0.89039 0.84214 0.75840 1.90689 1.74817 1.25985 1.49015 1.45898 1.06823 1.09383 1.74980 1.22822 0.80010 0.95628 1.01053 0.87264 1.21650 0.87278 0.97493 0.89354 1.44496 1.24787 1.58698 1.04953 1.18992 0.99499 1.33172 0.85761 0.89923 1.24866 0.97864 0.99088 0.97626 1.69967 1.27423 1.36249 1.21721 0.86112 0.79552 0.77726 0.82409 1.21347 1.21631 1.20496 1.21939 0.89860 0.99402 0.88783 1.23338 0.94610 0.80834 1.00249 0.86335 1.47269 1.24138 1.20754 1.14743 1.24206 1.04306 0.94361 0.92631 1.23545 0.98060 1.02266 0.99413 1.75003 1.22806 1.11463 1.05169 1.78205 1.03905 1.05727 1.21219 0.89743 0.94176 0.94226 0.93209 0.93388 0.93570 0.90184 0.92348 0.88971 0.88822 0.76785 0.92288 0.92425 0.93323 0.92247 0.92896 0.77926 0.79877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.61 10.24 -35.23 -0.36 -4.97 16 3 C 0.07 0.70 5.32 37.16 0.20 0.90 16 4 C -0.07 -0.91 2.27 -90.62 -0.21 -1.12 16 5 H 0.09 1.22 7.95 -51.93 -0.41 0.81 16 6 C -0.15 -2.15 8.83 37.16 0.33 -1.83 16 7 C -0.14 -1.68 5.18 -27.88 -0.14 -1.83 16 8 C 0.52 8.42 7.54 -10.98 -0.08 8.34 16 9 O -0.53 -10.28 13.69 5.56 0.08 -10.21 16 10 N -0.72 -11.58 5.08 -52.03 -0.26 -11.85 16 11 C 0.11 1.92 3.11 -66.10 -0.21 1.72 16 12 H 0.11 1.89 7.69 -51.93 -0.40 1.49 16 13 C 0.17 3.65 4.76 -3.06 -0.01 3.63 16 14 N -0.60 -12.90 2.23 -170.08 -0.38 -13.28 16 15 C -0.25 -5.96 10.05 -15.06 -0.15 -6.12 16 16 H 0.08 1.93 7.84 -52.48 -0.41 1.52 16 17 C 0.00 0.10 5.48 -17.43 -0.10 0.00 16 18 N -0.91 -24.59 10.36 55.49 0.57 -24.01 16 19 Si 0.91 20.34 29.56 -169.99 -5.02 15.31 16 20 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 C 0.13 2.14 6.21 -2.53 -0.02 2.13 16 24 C 0.11 1.73 4.06 -65.79 -0.27 1.46 16 25 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 26 N -0.28 -4.43 2.45 -52.68 -0.13 -4.55 16 27 C 0.00 -0.06 10.01 -17.04 -0.17 -0.23 16 28 C -0.08 -1.17 12.05 -17.73 -0.21 -1.39 16 29 N -0.28 -4.70 12.41 30.24 0.38 -4.32 16 30 N -0.11 -1.86 12.20 60.35 0.74 -1.12 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 1.38 5.95 -51.93 -0.31 1.08 16 38 H 0.06 0.82 7.82 -51.93 -0.41 0.42 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.40 6.23 6.72 -40.82 -0.27 5.96 16 42 H 0.06 1.45 7.18 -51.93 -0.37 1.08 16 43 H 0.06 1.49 7.61 -51.93 -0.40 1.10 16 44 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 45 H 0.06 0.97 7.86 -51.93 -0.41 0.56 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.20 3.72 6.81 -52.49 -0.36 3.36 16 48 H 0.18 2.27 8.06 -52.49 -0.42 1.84 16 LS Contribution 386.66 15.07 5.83 5.83 Total: -1.00 -29.45 386.66 -6.03 -35.48 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -7.53 Total: 10.64 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 0.07 Total: 7.05 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: 0.91 Total: -59.14 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.28 Total: -15.17 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.45 -6.03 -35.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129359644.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.739 kcal (2) G-P(sol) polarization free energy of solvation -29.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds