Wall clock time and date at job start Tue Mar 31 2020 19:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99592 * 2 1 4 4 C 1.52999 * 109.47245 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47174 * 55.00350 * 4 3 2 6 6 C 1.53002 * 109.47373 * 295.00008 * 4 3 2 7 7 C 1.53008 * 109.47413 * 174.99778 * 4 3 2 8 8 C 1.50702 * 109.47093 * 184.99943 * 7 4 3 9 9 O 1.21277 * 120.00039 * 0.02562 * 8 7 4 10 10 N 1.34776 * 119.99544 * 179.97438 * 8 7 4 11 11 C 1.46502 * 119.99680 * 180.02562 * 10 8 7 12 12 H 1.09002 * 110.64535 * 36.68666 * 11 10 8 13 13 C 1.54330 * 110.71994 * 273.54692 * 11 10 8 14 14 N 1.47017 * 107.26959 * 219.44412 * 13 11 10 15 15 C 1.36937 * 125.64487 * 178.90596 * 14 13 11 16 16 H 1.08007 * 119.99767 * 174.91033 * 15 14 13 17 17 C 1.38812 * 120.00336 * 354.90564 * 15 14 13 18 18 N 1.31622 * 119.99769 * 7.06483 * 17 15 14 19 19 Si 1.86792 * 120.00139 * 187.06897 * 17 15 14 20 20 H 1.48498 * 109.47583 * 94.98526 * 19 17 15 21 21 H 1.48507 * 109.46981 * 214.98560 * 19 17 15 22 22 H 1.48502 * 109.47265 * 334.98316 * 19 17 15 23 23 C 1.47418 * 108.70500 * 358.94120 * 14 13 11 24 24 C 1.54908 * 104.83341 * 24.12618 * 23 14 13 25 25 H 1.09005 * 111.00402 * 204.91516 * 24 23 14 26 26 N 1.46497 * 111.00360 * 81.06918 * 24 23 14 27 27 C 1.35320 * 125.86533 * 332.79995 * 26 24 23 28 28 C 1.35352 * 106.17332 * 179.97438 * 27 26 24 29 29 N 1.33776 * 106.49604 * 0.02562 * 28 27 26 30 30 N 1.28634 * 108.88834 * 359.72891 * 29 28 27 31 31 H 1.09003 * 109.46530 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47133 * 299.99488 * 1 2 3 33 33 H 1.08992 * 109.47250 * 60.00160 * 1 2 3 34 34 H 1.09003 * 109.47741 * 59.99901 * 3 2 1 35 35 H 1.08998 * 109.47458 * 299.99935 * 3 2 1 36 36 H 1.09000 * 109.46786 * 300.00031 * 6 4 3 37 37 H 1.09004 * 109.47282 * 179.97438 * 6 4 3 38 38 H 1.09000 * 109.46380 * 59.99729 * 6 4 3 39 39 H 1.08997 * 109.46909 * 305.00546 * 7 4 3 40 40 H 1.09000 * 109.46508 * 65.00301 * 7 4 3 41 41 H 0.96998 * 120.00355 * 0.02562 * 10 8 7 42 42 H 1.08997 * 109.87684 * 338.86268 * 13 11 10 43 43 H 1.08998 * 109.88364 * 100.02439 * 13 11 10 44 44 H 0.96998 * 119.99706 * 180.02562 * 18 17 15 45 45 H 1.09004 * 110.36844 * 142.96694 * 23 14 13 46 46 H 1.09001 * 110.36888 * 265.28849 * 23 14 13 47 47 H 1.07994 * 126.91518 * 0.02843 * 27 26 24 48 48 H 1.08000 * 126.75300 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 1 3.8514 0.5684 -0.8410 6 6 3.9952 0.5371 1.3083 7 6 4.1572 2.5771 -0.1251 8 6 5.6538 2.4496 -0.2480 9 8 6.1719 1.3531 -0.2366 10 7 6.4163 3.5541 -0.3716 11 6 7.8711 3.4301 -0.4916 12 1 8.1347 2.5522 -1.0814 13 6 8.5308 3.3694 0.9023 14 7 9.7690 4.1590 0.8339 15 6 10.6371 4.3733 1.8711 16 1 11.5638 4.9009 1.6994 17 6 10.3260 3.9128 3.1431 18 7 9.2680 3.1517 3.3269 19 14 11.4089 4.3732 4.5938 20 1 10.8449 5.5671 5.2733 21 1 11.4633 3.2387 5.5506 22 1 12.7794 4.6797 4.1110 23 6 9.9209 4.6823 -0.5358 24 6 8.4824 4.7152 -1.1096 25 1 8.4945 4.6576 -2.1981 26 7 7.7637 5.9088 -0.6571 27 6 7.9956 6.5861 0.4912 28 6 7.1125 7.6117 0.5089 29 7 6.3927 7.5126 -0.6143 30 7 6.8066 6.4966 -1.2859 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.6885 1.8465 0.8900 35 1 1.6885 1.8464 -0.8900 36 1 3.6791 1.1535 2.1498 37 1 5.0818 0.4507 1.3085 38 1 3.5522 -0.4548 1.3978 39 1 3.7608 3.0734 -1.0109 40 1 3.9141 3.1648 0.7601 41 1 6.0018 4.4310 -0.3811 42 1 7.8601 3.7954 1.6485 43 1 8.7638 2.3356 1.1575 44 1 9.0505 2.8302 4.2158 45 1 10.3435 5.6869 -0.5135 46 1 10.5505 4.0183 -1.1281 47 1 8.7368 6.3553 1.2420 48 1 7.0093 8.3624 1.2785 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129359644.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:29 Heat of formation + Delta-G solvation = 30.638500 kcal Electronic energy + Delta-G solvation = -30627.778477 eV Core-core repulsion = 26527.634601 eV Total energy + Delta-G solvation = -4100.143876 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.24427 -41.17379 -39.58980 -38.86194 -35.92856 -35.55721 -34.80865 -33.44290 -31.84146 -30.83039 -29.58862 -28.52593 -28.15053 -26.66981 -26.18580 -24.09552 -23.50681 -22.74213 -21.68411 -21.42042 -20.96018 -19.26279 -18.56111 -18.46385 -17.35676 -17.26575 -16.94860 -16.79740 -16.41304 -16.15099 -15.93575 -15.76224 -15.66312 -15.23487 -14.97617 -14.76735 -14.45923 -14.12830 -13.91982 -13.86296 -13.37095 -13.31226 -13.08537 -12.96084 -12.82450 -12.71698 -12.52557 -12.45528 -12.24514 -12.12653 -12.04698 -11.90566 -11.87627 -11.80881 -11.68138 -11.10992 -10.83595 -10.72636 -10.57845 -10.24522 -10.13296 -8.99387 -7.87354 -5.25468 0.67321 1.34654 1.49063 1.50317 1.58411 1.60365 1.66108 2.02885 2.47616 2.88149 3.16818 3.33528 3.41083 3.54049 3.64705 3.76975 3.85597 3.94723 4.03007 4.13706 4.23880 4.32251 4.44435 4.44874 4.47456 4.48378 4.50221 4.58774 4.59356 4.69392 4.69827 4.81231 4.85599 4.87376 4.89693 5.04551 5.15229 5.29041 5.31560 5.41845 5.43541 5.55117 5.69847 5.75194 6.09967 6.27289 6.40194 7.01682 7.18941 7.55868 7.69379 8.29455 9.21328 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010683 B = 0.003561 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.272630 B = 7860.741037 C = 9370.888042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.069 3.931 4 C -0.068 4.068 5 H 0.069 0.931 6 C -0.145 4.145 7 C -0.127 4.127 8 C 0.512 3.488 9 O -0.567 6.567 10 N -0.713 5.713 11 C 0.122 3.878 12 H 0.111 0.889 13 C 0.189 3.811 14 N -0.615 5.615 15 C -0.238 4.238 16 H 0.094 0.906 17 C -0.054 4.054 18 N -0.943 5.943 19 Si 0.970 3.030 20 H -0.285 1.285 21 H -0.306 1.306 22 H -0.266 1.266 23 C 0.126 3.874 24 C 0.128 3.872 25 H 0.158 0.842 26 N -0.273 5.273 27 C -0.018 4.018 28 C -0.064 4.064 29 N -0.291 5.291 30 N -0.110 5.110 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.043 0.957 38 H 0.055 0.945 39 H 0.125 0.875 40 H 0.107 0.893 41 H 0.402 0.598 42 H 0.024 0.976 43 H 0.003 0.997 44 H 0.244 0.756 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.186 0.814 48 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.167 3.067 -8.753 15.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.007 4.007 4 C -0.087 4.087 5 H 0.088 0.912 6 C -0.202 4.202 7 C -0.167 4.167 8 C 0.300 3.700 9 O -0.445 6.445 10 N -0.366 5.366 11 C 0.014 3.986 12 H 0.128 0.872 13 C 0.063 3.937 14 N -0.342 5.342 15 C -0.366 4.366 16 H 0.111 0.889 17 C -0.248 4.248 18 N -0.591 5.591 19 Si 0.800 3.200 20 H -0.212 1.212 21 H -0.233 1.233 22 H -0.191 1.191 23 C 0.000 4.000 24 C 0.024 3.976 25 H 0.175 0.825 26 N -0.067 5.067 27 C -0.170 4.170 28 C -0.221 4.221 29 N -0.157 5.157 30 N -0.089 5.089 31 H 0.111 0.889 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.143 0.857 40 H 0.125 0.875 41 H 0.238 0.762 42 H 0.042 0.958 43 H 0.021 0.979 44 H 0.054 0.946 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.203 0.797 48 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -12.556 2.054 -9.820 16.071 hybrid contribution 1.173 0.217 2.328 2.616 sum -11.383 2.270 -7.492 13.815 Atomic orbital electron populations 1.22916 0.79505 1.03674 1.00944 1.87854 1.21409 1.28707 1.95616 1.22576 0.91896 0.84597 1.01629 1.20729 0.93702 0.94922 0.99316 0.91230 1.21808 1.01112 1.00754 0.96536 1.21653 0.89336 0.99328 1.06372 1.21184 0.90741 0.83485 0.74604 1.90684 1.75864 1.27426 1.50552 1.45863 1.06228 1.09706 1.74757 1.22510 0.80714 0.97147 0.98229 0.87163 1.21144 0.87248 0.93984 0.91332 1.44622 1.24235 1.58798 1.06572 1.19364 0.99775 1.31121 0.86339 0.88858 1.25565 0.99224 0.99918 1.00082 1.70199 1.29509 1.38314 1.21081 0.85182 0.78763 0.76624 0.79468 1.21197 1.23349 1.19073 1.22144 0.91298 1.00122 0.86416 1.23342 0.92859 0.79399 1.01967 0.82495 1.47307 1.24119 1.20722 1.14556 1.24050 1.04834 0.95311 0.92756 1.23976 0.96703 1.02090 0.99320 1.75013 1.23249 1.11732 1.05721 1.78184 1.03764 1.05750 1.21185 0.88879 0.93242 0.92852 0.92032 0.91199 0.92835 0.93783 0.92560 0.85710 0.87484 0.76210 0.95798 0.97891 0.94648 0.91021 0.90673 0.79737 0.77141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.42 -9.34 10.24 -148.98 -1.53 -10.87 16 3 C 0.07 1.34 5.32 71.98 0.38 1.73 16 4 C -0.07 -1.69 2.27 -10.79 -0.02 -1.71 16 5 H 0.07 1.97 7.95 -2.39 -0.02 1.96 16 6 C -0.14 -4.31 8.83 71.98 0.64 -3.67 16 7 C -0.13 -2.96 5.18 29.85 0.15 -2.80 16 8 C 0.51 16.65 7.54 87.66 0.66 17.31 16 9 O -0.57 -22.96 13.69 -3.02 -0.04 -23.00 16 10 N -0.71 -22.63 5.08 -436.92 -2.22 -24.85 16 11 C 0.12 4.16 3.11 46.18 0.14 4.31 16 12 H 0.11 3.81 7.69 -2.39 -0.02 3.79 16 13 C 0.19 8.56 4.76 86.73 0.41 8.97 16 14 N -0.61 -26.51 2.23 -692.00 -1.55 -28.06 16 15 C -0.24 -11.52 10.05 84.03 0.84 -10.68 16 16 H 0.09 4.25 7.84 -2.91 -0.02 4.23 16 17 C -0.05 -2.79 5.48 84.86 0.46 -2.33 16 18 N -0.94 -53.70 10.36 21.65 0.22 -53.47 16 19 Si 0.97 42.63 29.56 68.60 2.03 44.65 16 20 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.31 -14.13 7.11 99.48 0.71 -13.43 16 22 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 23 C 0.13 3.99 6.21 86.86 0.54 4.53 16 24 C 0.13 3.60 4.06 46.38 0.19 3.79 16 25 H 0.16 3.36 8.14 -2.38 -0.02 3.34 16 26 N -0.27 -8.20 2.45 -320.60 -0.79 -8.98 16 27 C -0.02 -0.57 10.01 83.49 0.84 0.27 16 28 C -0.06 -1.84 12.05 83.73 1.01 -0.83 16 29 N -0.29 -9.09 12.41 -58.25 -0.72 -9.81 16 30 N -0.11 -3.37 12.20 37.02 0.45 -2.92 16 31 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.04 1.62 5.95 -2.39 -0.01 1.61 16 38 H 0.06 1.65 7.82 -2.39 -0.02 1.63 16 39 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.40 12.02 6.72 -92.71 -0.62 11.39 16 42 H 0.02 1.24 7.18 -2.39 -0.02 1.22 16 43 H 0.00 0.16 7.61 -2.39 -0.02 0.14 16 44 H 0.24 13.91 8.31 -92.71 -0.77 13.14 16 45 H 0.07 2.14 7.86 -2.39 -0.02 2.12 16 46 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.19 6.71 6.81 -2.91 -0.02 6.70 16 48 H 0.21 4.63 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -67.63 386.66 3.70 -63.92 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: 0.34 Total: 32.88 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: 7.50 Total: 20.50 kcal Atomic # 7 Polarization: -123.49 SS G_CDS: -4.60 Total: -128.08 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -1.57 Total: -33.87 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Total: -67.63 3.70 -63.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129359644.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.563 kcal (2) G-P(sol) polarization free energy of solvation -67.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds