Wall clock time and date at job start Tue Mar 31 2020 19:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47646 * 305.00069 * 4 3 2 6 6 C 1.53003 * 109.47064 * 65.00303 * 4 3 2 7 7 C 1.52999 * 109.47315 * 184.99552 * 4 3 2 8 8 C 1.50693 * 109.47411 * 174.99998 * 7 4 3 9 9 O 1.21275 * 120.00140 * 0.02562 * 8 7 4 10 10 N 1.34780 * 119.99950 * 180.02562 * 8 7 4 11 11 C 1.46501 * 119.99766 * 180.02562 * 10 8 7 12 12 H 1.08999 * 110.64597 * 36.68754 * 11 10 8 13 13 C 1.54324 * 110.72104 * 273.54430 * 11 10 8 14 14 N 1.47024 * 107.27120 * 219.44573 * 13 11 10 15 15 C 1.36937 * 125.64626 * 178.90724 * 14 13 11 16 16 H 1.08004 * 120.00102 * 180.02562 * 15 14 13 17 17 C 1.38813 * 120.00070 * 0.02562 * 15 14 13 18 18 N 1.31620 * 120.00051 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00156 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46946 * 90.00089 * 19 17 15 21 21 H 1.48497 * 109.47264 * 210.00198 * 19 17 15 22 22 H 1.48498 * 109.46769 * 330.00337 * 19 17 15 23 23 C 1.47419 * 108.70661 * 358.94104 * 14 13 11 24 24 C 1.54916 * 104.82999 * 24.12557 * 23 14 13 25 25 H 1.09000 * 111.00383 * 204.91110 * 24 23 14 26 26 N 1.46507 * 110.99970 * 81.06816 * 24 23 14 27 27 C 1.35307 * 125.86559 * 332.80001 * 26 24 23 28 28 C 1.35356 * 106.17483 * 180.02562 * 27 26 24 29 29 N 1.33777 * 106.49182 * 0.02562 * 28 27 26 30 30 N 1.28627 * 108.88764 * 359.73327 * 29 28 27 31 31 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 33 33 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 34 34 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 35 35 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 36 36 H 1.09004 * 109.46694 * 299.99692 * 6 4 3 37 37 H 1.08998 * 109.47633 * 59.99874 * 6 4 3 38 38 H 1.08999 * 109.47201 * 179.97438 * 6 4 3 39 39 H 1.09006 * 109.47515 * 295.00818 * 7 4 3 40 40 H 1.09009 * 109.46880 * 55.00337 * 7 4 3 41 41 H 0.96998 * 120.00497 * 0.02562 * 10 8 7 42 42 H 1.09003 * 109.88278 * 338.86365 * 13 11 10 43 43 H 1.09006 * 109.88062 * 100.02854 * 13 11 10 44 44 H 0.96999 * 119.99659 * 179.97438 * 18 17 15 45 45 H 1.08991 * 110.36757 * 142.96507 * 23 14 13 46 46 H 1.09004 * 110.36818 * 265.29315 * 23 14 13 47 47 H 1.08001 * 126.92225 * 0.02562 * 27 26 24 48 48 H 1.07995 * 126.75452 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8508 0.5686 0.8426 6 6 3.9962 0.5365 -1.3065 7 6 4.1573 2.5769 0.1263 8 6 5.6537 2.4494 0.2504 9 8 6.1719 1.3530 0.2390 10 7 6.4162 3.5539 0.3741 11 6 7.8710 3.4299 0.4942 12 1 8.2400 2.6150 -0.1285 13 6 8.2814 3.2205 1.9671 14 7 9.5059 4.0019 2.1943 15 6 10.1805 4.1008 3.3819 16 1 11.0745 4.7034 3.4465 17 6 9.7155 3.4266 4.5026 18 7 8.6263 2.6919 4.4237 19 14 10.6362 3.5610 6.1224 20 1 10.1053 4.7096 6.8997 21 1 10.4535 2.3098 6.9010 22 1 12.0816 3.7706 5.8542 23 6 9.8866 4.6619 0.9323 24 6 8.5681 4.7663 0.1259 25 1 8.7679 4.8209 -0.9443 26 7 7.7714 5.9135 0.5683 27 6 7.7962 6.4670 1.8027 28 6 6.9133 7.4926 1.7739 29 7 6.3980 7.5154 0.5396 30 7 6.9308 6.5706 -0.1517 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3632 0.5138 -0.8900 34 1 1.6886 1.8464 -0.8900 35 1 1.6886 1.8464 0.8899 36 1 3.5532 -0.4554 -1.3960 37 1 3.6810 1.1526 -2.1485 38 1 5.0829 0.4508 -1.3062 39 1 3.9149 3.1645 -0.7593 40 1 3.7603 3.0736 1.0117 41 1 6.0018 4.4308 0.3836 42 1 7.4886 3.5736 2.6266 43 1 8.4764 2.1639 2.1509 44 1 8.3016 2.2205 5.2068 45 1 10.2899 5.6549 1.1302 46 1 10.6146 4.0565 0.3922 47 1 8.3992 6.1538 2.6422 48 1 6.6722 8.1608 2.5873 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129359645.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:32 Heat of formation + Delta-G solvation = 50.399283 kcal Electronic energy + Delta-G solvation = -30566.794446 eV Core-core repulsion = 26467.507462 eV Total energy + Delta-G solvation = -4099.286985 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.96065 -39.84995 -38.37634 -37.75431 -34.72854 -34.13105 -33.41548 -31.76867 -30.56178 -29.34079 -28.23894 -27.45936 -27.01712 -25.53292 -24.80160 -22.70649 -22.21741 -21.34628 -20.37808 -20.02679 -19.73611 -17.76543 -17.27042 -16.97300 -16.36179 -16.13875 -15.85526 -15.35729 -15.22064 -14.98402 -14.67801 -14.47128 -14.15104 -13.86797 -13.66464 -13.46138 -13.15072 -12.95355 -12.54758 -12.40364 -12.27296 -12.16023 -11.80165 -11.65888 -11.38674 -11.34626 -11.12155 -11.08952 -10.91704 -10.84487 -10.71047 -10.62843 -10.55720 -10.24678 -10.00515 -9.81576 -9.77581 -9.50845 -8.97482 -8.85059 -8.67844 -7.15763 -5.92441 -3.32125 1.98383 2.62621 2.89929 2.91428 3.24075 3.28416 3.34294 3.36874 3.74090 4.28732 4.50410 4.71510 4.73833 4.81024 4.94064 4.96190 5.07078 5.10825 5.13276 5.24912 5.30721 5.32014 5.33646 5.43047 5.44360 5.52228 5.60141 5.70997 5.72847 5.78971 5.82629 5.86145 6.04679 6.13486 6.14287 6.18116 6.32678 6.46884 6.52422 6.63142 7.01013 7.03550 7.28970 7.32147 7.61154 7.71993 7.96687 8.48082 8.84351 8.94670 9.54682 10.14095 11.17164 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010349 B = 0.003522 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.823745 B = 7948.819416 C = 9389.914322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.066 3.934 4 C -0.073 4.073 5 H 0.089 0.911 6 C -0.148 4.148 7 C -0.136 4.136 8 C 0.519 3.481 9 O -0.529 6.529 10 N -0.718 5.718 11 C 0.112 3.888 12 H 0.110 0.890 13 C 0.169 3.831 14 N -0.602 5.602 15 C -0.247 4.247 16 H 0.083 0.917 17 C 0.003 3.997 18 N -0.911 5.911 19 Si 0.914 3.086 20 H -0.287 1.287 21 H -0.289 1.289 22 H -0.280 1.280 23 C 0.128 3.872 24 C 0.114 3.886 25 H 0.119 0.881 26 N -0.276 5.276 27 C -0.004 4.004 28 C -0.076 4.076 29 N -0.278 5.278 30 N -0.111 5.111 31 H 0.084 0.916 32 H 0.040 0.960 33 H 0.039 0.961 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.397 0.603 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.256 0.744 45 H 0.059 0.941 46 H 0.054 0.946 47 H 0.204 0.796 48 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.874 1.952 -9.026 13.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.011 4.011 4 C -0.092 4.092 5 H 0.108 0.892 6 C -0.205 4.205 7 C -0.176 4.176 8 C 0.305 3.695 9 O -0.405 6.405 10 N -0.371 5.371 11 C 0.005 3.995 12 H 0.127 0.873 13 C 0.043 3.957 14 N -0.329 5.329 15 C -0.374 4.374 16 H 0.101 0.899 17 C -0.195 4.195 18 N -0.556 5.556 19 Si 0.744 3.256 20 H -0.214 1.214 21 H -0.215 1.215 22 H -0.206 1.206 23 C 0.000 4.000 24 C 0.010 3.990 25 H 0.137 0.863 26 N -0.069 5.069 27 C -0.155 4.155 28 C -0.233 4.233 29 N -0.144 5.144 30 N -0.090 5.090 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.232 0.768 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.220 0.780 48 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -10.070 0.997 -10.212 14.377 hybrid contribution 0.573 0.584 2.069 2.225 sum -9.497 1.581 -8.143 12.609 Atomic orbital electron populations 1.22728 0.81327 1.02627 0.99832 1.87897 1.19345 1.27971 1.95365 1.22610 0.93891 0.84579 1.00029 1.20805 0.91781 0.95331 1.01306 0.89234 1.21882 1.03254 1.00398 0.94943 1.21625 0.92632 0.99032 1.04292 1.20396 0.89066 0.84209 0.75819 1.90689 1.74734 1.25878 1.49184 1.45897 1.06951 1.09387 1.74855 1.22829 0.79774 0.94857 1.02051 0.87258 1.21639 0.89160 0.97432 0.87434 1.44486 1.28184 1.55129 1.05148 1.18984 1.06772 1.26785 0.84838 0.89936 1.24854 0.97584 0.98810 0.98269 1.69948 1.22891 1.33629 1.29152 0.86104 0.79037 0.77214 0.83255 1.21357 1.21549 1.20559 1.21934 0.91023 0.98399 0.88630 1.23349 0.92967 0.81983 1.00747 0.86326 1.47271 1.28228 1.22460 1.08938 1.24199 1.03754 0.96431 0.91158 1.23546 1.00612 1.02017 0.97092 1.75002 1.21309 1.14115 1.04014 1.78203 1.05458 1.04695 1.20685 0.89736 0.94151 0.94241 0.93293 0.93279 0.92271 0.93746 0.90505 0.88893 0.88888 0.76788 0.92446 0.92245 0.93312 0.92303 0.92850 0.77950 0.79871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.65 10.24 -35.23 -0.36 -5.01 16 3 C 0.07 0.71 5.32 37.16 0.20 0.91 16 4 C -0.07 -0.94 2.27 -90.62 -0.21 -1.14 16 5 H 0.09 1.35 7.95 -51.93 -0.41 0.94 16 6 C -0.15 -1.91 8.83 37.16 0.33 -1.58 16 7 C -0.14 -1.68 5.17 -27.89 -0.14 -1.82 16 8 C 0.52 8.43 7.54 -10.99 -0.08 8.35 16 9 O -0.53 -10.30 13.69 5.56 0.08 -10.22 16 10 N -0.72 -11.59 5.08 -52.03 -0.26 -11.85 16 11 C 0.11 1.93 3.11 -66.10 -0.21 1.72 16 12 H 0.11 1.89 7.69 -51.93 -0.40 1.49 16 13 C 0.17 3.69 4.75 -3.06 -0.01 3.67 16 14 N -0.60 -12.94 2.23 -170.07 -0.38 -13.32 16 15 C -0.25 -5.97 10.06 -15.06 -0.15 -6.12 16 16 H 0.08 1.92 7.83 -52.48 -0.41 1.51 16 17 C 0.00 0.08 5.49 -17.43 -0.10 -0.02 16 18 N -0.91 -24.80 10.31 55.49 0.57 -24.22 16 19 Si 0.91 20.45 29.55 -169.99 -5.02 15.43 16 20 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 C 0.13 2.15 6.21 -2.53 -0.02 2.13 16 24 C 0.11 1.72 4.06 -65.77 -0.27 1.46 16 25 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 26 N -0.28 -4.42 2.45 -52.67 -0.13 -4.55 16 27 C 0.00 -0.06 10.01 -17.05 -0.17 -0.23 16 28 C -0.08 -1.17 12.06 -17.73 -0.21 -1.38 16 29 N -0.28 -4.69 12.41 30.24 0.38 -4.32 16 30 N -0.11 -1.85 12.20 60.35 0.74 -1.12 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.77 7.82 -51.93 -0.41 0.36 16 37 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 1.16 5.95 -51.93 -0.31 0.85 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.09 1.06 8.14 -51.92 -0.42 0.63 16 41 H 0.40 6.23 6.72 -40.82 -0.27 5.96 16 42 H 0.06 1.42 7.27 -51.93 -0.38 1.04 16 43 H 0.06 1.55 7.51 -51.93 -0.39 1.16 16 44 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.06 0.96 7.86 -51.93 -0.41 0.55 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.20 3.70 6.81 -52.49 -0.36 3.35 16 48 H 0.18 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 386.58 15.07 5.83 5.83 Total: -1.00 -29.63 386.58 -6.03 -35.66 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -7.53 Total: 10.39 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: 0.07 Total: 7.31 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: 0.91 Total: -59.38 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.28 Total: -15.23 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.63 -6.03 -35.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129359645.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.061 kcal (2) G-P(sol) polarization free energy of solvation -29.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds