Wall clock time and date at job start Tue Mar 31 2020 19:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47646 * 305.00069 * 4 3 2 6 6 C 1.53003 * 109.47064 * 65.00303 * 4 3 2 7 7 C 1.52999 * 109.47315 * 184.99552 * 4 3 2 8 8 C 1.50693 * 109.47411 * 174.99998 * 7 4 3 9 9 O 1.21275 * 120.00140 * 0.02562 * 8 7 4 10 10 N 1.34780 * 119.99950 * 180.02562 * 8 7 4 11 11 C 1.46501 * 119.99766 * 180.02562 * 10 8 7 12 12 H 1.08999 * 110.64597 * 36.68754 * 11 10 8 13 13 C 1.54324 * 110.72104 * 273.54430 * 11 10 8 14 14 N 1.47024 * 107.27120 * 219.44573 * 13 11 10 15 15 C 1.36937 * 125.64626 * 178.90724 * 14 13 11 16 16 H 1.08004 * 120.00102 * 180.02562 * 15 14 13 17 17 C 1.38813 * 120.00070 * 0.02562 * 15 14 13 18 18 N 1.31620 * 120.00051 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00156 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46946 * 90.00089 * 19 17 15 21 21 H 1.48497 * 109.47264 * 210.00198 * 19 17 15 22 22 H 1.48498 * 109.46769 * 330.00337 * 19 17 15 23 23 C 1.47419 * 108.70661 * 358.94104 * 14 13 11 24 24 C 1.54916 * 104.82999 * 24.12557 * 23 14 13 25 25 H 1.09000 * 111.00383 * 204.91110 * 24 23 14 26 26 N 1.46507 * 110.99970 * 81.06816 * 24 23 14 27 27 C 1.35307 * 125.86559 * 332.80001 * 26 24 23 28 28 C 1.35356 * 106.17483 * 180.02562 * 27 26 24 29 29 N 1.33777 * 106.49182 * 0.02562 * 28 27 26 30 30 N 1.28627 * 108.88764 * 359.73327 * 29 28 27 31 31 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 33 33 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 34 34 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 35 35 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 36 36 H 1.09004 * 109.46694 * 299.99692 * 6 4 3 37 37 H 1.08998 * 109.47633 * 59.99874 * 6 4 3 38 38 H 1.08999 * 109.47201 * 179.97438 * 6 4 3 39 39 H 1.09006 * 109.47515 * 295.00818 * 7 4 3 40 40 H 1.09009 * 109.46880 * 55.00337 * 7 4 3 41 41 H 0.96998 * 120.00497 * 0.02562 * 10 8 7 42 42 H 1.09003 * 109.88278 * 338.86365 * 13 11 10 43 43 H 1.09006 * 109.88062 * 100.02854 * 13 11 10 44 44 H 0.96999 * 119.99659 * 179.97438 * 18 17 15 45 45 H 1.08991 * 110.36757 * 142.96507 * 23 14 13 46 46 H 1.09004 * 110.36818 * 265.29315 * 23 14 13 47 47 H 1.08001 * 126.92225 * 0.02562 * 27 26 24 48 48 H 1.07995 * 126.75452 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8508 0.5686 0.8426 6 6 3.9962 0.5365 -1.3065 7 6 4.1573 2.5769 0.1263 8 6 5.6537 2.4494 0.2504 9 8 6.1719 1.3530 0.2390 10 7 6.4162 3.5539 0.3741 11 6 7.8710 3.4299 0.4942 12 1 8.2400 2.6150 -0.1285 13 6 8.2814 3.2205 1.9671 14 7 9.5059 4.0019 2.1943 15 6 10.1805 4.1008 3.3819 16 1 11.0745 4.7034 3.4465 17 6 9.7155 3.4266 4.5026 18 7 8.6263 2.6919 4.4237 19 14 10.6362 3.5610 6.1224 20 1 10.1053 4.7096 6.8997 21 1 10.4535 2.3098 6.9010 22 1 12.0816 3.7706 5.8542 23 6 9.8866 4.6619 0.9323 24 6 8.5681 4.7663 0.1259 25 1 8.7679 4.8209 -0.9443 26 7 7.7714 5.9135 0.5683 27 6 7.7962 6.4670 1.8027 28 6 6.9133 7.4926 1.7739 29 7 6.3980 7.5154 0.5396 30 7 6.9308 6.5706 -0.1517 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3632 0.5138 -0.8900 34 1 1.6886 1.8464 -0.8900 35 1 1.6886 1.8464 0.8899 36 1 3.5532 -0.4554 -1.3960 37 1 3.6810 1.1526 -2.1485 38 1 5.0829 0.4508 -1.3062 39 1 3.9149 3.1645 -0.7593 40 1 3.7603 3.0736 1.0117 41 1 6.0018 4.4308 0.3836 42 1 7.4886 3.5736 2.6266 43 1 8.4764 2.1639 2.1509 44 1 8.3016 2.2205 5.2068 45 1 10.2899 5.6549 1.1302 46 1 10.6146 4.0565 0.3922 47 1 8.3992 6.1538 2.6422 48 1 6.6722 8.1608 2.5873 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129359645.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:31 Heat of formation + Delta-G solvation = 30.606643 kcal Electronic energy + Delta-G solvation = -30567.652720 eV Core-core repulsion = 26467.507462 eV Total energy + Delta-G solvation = -4100.145258 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.24750 -41.17569 -39.59258 -38.86719 -35.92857 -35.55798 -34.81114 -33.43922 -31.84299 -30.82898 -29.58117 -28.53136 -28.14043 -26.66493 -26.19186 -24.09563 -23.50691 -22.73325 -21.70659 -21.42885 -20.94721 -19.25793 -18.56173 -18.47545 -17.34923 -17.25690 -16.96761 -16.77547 -16.46896 -16.18692 -15.91790 -15.78601 -15.65624 -15.12468 -14.97445 -14.87968 -14.39002 -14.08861 -13.97242 -13.86581 -13.41816 -13.18038 -13.10584 -12.97513 -12.82637 -12.71375 -12.50809 -12.44772 -12.28725 -12.09711 -12.06046 -11.89013 -11.87225 -11.81276 -11.68201 -11.10725 -10.86056 -10.73811 -10.58773 -10.24619 -10.12395 -9.00079 -7.86529 -5.25684 0.67179 1.34499 1.48797 1.50302 1.58076 1.60256 1.66014 2.02557 2.47489 2.87715 3.16770 3.34467 3.41676 3.53373 3.64400 3.76735 3.86380 3.94666 4.03270 4.15231 4.23301 4.32769 4.43296 4.44550 4.46811 4.47966 4.49855 4.57745 4.59455 4.69023 4.72084 4.81309 4.85660 4.86525 4.90045 5.06811 5.16077 5.30749 5.31493 5.43910 5.44948 5.53781 5.69724 5.74923 6.09763 6.26636 6.40051 7.01650 7.18838 7.55796 7.69436 8.28906 9.21757 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010349 B = 0.003522 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.823745 B = 7948.819416 C = 9389.914322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.069 3.931 4 C -0.072 4.072 5 H 0.055 0.945 6 C -0.141 4.141 7 C -0.127 4.127 8 C 0.512 3.488 9 O -0.567 6.567 10 N -0.713 5.713 11 C 0.122 3.878 12 H 0.111 0.889 13 C 0.190 3.810 14 N -0.615 5.615 15 C -0.236 4.236 16 H 0.095 0.905 17 C -0.056 4.056 18 N -0.946 5.946 19 Si 0.972 3.028 20 H -0.284 1.284 21 H -0.306 1.306 22 H -0.268 1.268 23 C 0.126 3.874 24 C 0.128 3.872 25 H 0.158 0.842 26 N -0.273 5.273 27 C -0.018 4.018 28 C -0.064 4.064 29 N -0.291 5.291 30 N -0.110 5.110 31 H 0.093 0.907 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.050 0.950 39 H 0.125 0.875 40 H 0.107 0.893 41 H 0.402 0.598 42 H 0.021 0.979 43 H 0.005 0.995 44 H 0.244 0.756 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.185 0.815 48 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.444 4.167 -10.695 15.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.007 4.007 4 C -0.092 4.092 5 H 0.073 0.927 6 C -0.199 4.199 7 C -0.166 4.166 8 C 0.300 3.700 9 O -0.445 6.445 10 N -0.365 5.365 11 C 0.014 3.986 12 H 0.129 0.871 13 C 0.064 3.936 14 N -0.342 5.342 15 C -0.365 4.365 16 H 0.113 0.887 17 C -0.250 4.250 18 N -0.594 5.594 19 Si 0.801 3.199 20 H -0.211 1.211 21 H -0.233 1.233 22 H -0.192 1.192 23 C 0.000 4.000 24 C 0.024 3.976 25 H 0.175 0.825 26 N -0.067 5.067 27 C -0.170 4.170 28 C -0.221 4.221 29 N -0.157 5.157 30 N -0.089 5.089 31 H 0.111 0.889 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.143 0.857 40 H 0.125 0.875 41 H 0.238 0.762 42 H 0.040 0.960 43 H 0.023 0.977 44 H 0.053 0.947 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.202 0.798 48 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -10.629 3.265 -11.916 16.298 hybrid contribution 0.765 -0.100 2.557 2.671 sum -9.864 3.165 -9.359 13.961 Atomic orbital electron populations 1.22919 0.79500 1.03678 1.00945 1.87856 1.21425 1.28740 1.95614 1.22579 0.91997 0.84578 1.01572 1.20748 0.93696 0.94932 0.99783 0.92692 1.21794 1.01411 1.00700 0.95947 1.21644 0.89279 0.99368 1.06341 1.21176 0.90737 0.83468 0.74606 1.90683 1.75771 1.27308 1.50775 1.45861 1.06424 1.09706 1.74552 1.22513 0.80909 0.96475 0.98686 0.87137 1.21128 0.88478 0.94062 0.89946 1.44610 1.27981 1.55383 1.06260 1.19374 1.06452 1.25016 0.85631 0.88750 1.25567 0.98577 0.99549 1.01296 1.70186 1.24825 1.35412 1.28970 0.85174 0.78581 0.76219 0.79890 1.21061 1.23300 1.19229 1.22145 0.92242 0.98769 0.86830 1.23352 0.91285 0.80477 1.02459 0.82472 1.47309 1.28233 1.22421 1.08744 1.24044 1.04558 0.97354 0.91038 1.23979 0.99248 1.01580 0.97251 1.75012 1.21728 1.14418 1.04564 1.78182 1.05346 1.04698 1.20644 0.88877 0.93342 0.92740 0.91043 0.92284 0.92834 0.91536 0.93103 0.85726 0.87515 0.76206 0.96042 0.97707 0.94696 0.91044 0.90618 0.79756 0.77120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.42 -9.60 10.24 -148.98 -1.53 -11.12 16 3 C 0.07 1.37 5.32 71.98 0.38 1.76 16 4 C -0.07 -1.83 2.27 -10.79 -0.02 -1.85 16 5 H 0.05 1.75 7.95 -2.39 -0.02 1.73 16 6 C -0.14 -3.62 8.83 71.98 0.64 -2.98 16 7 C -0.13 -2.96 5.17 29.85 0.15 -2.81 16 8 C 0.51 16.70 7.54 87.65 0.66 17.36 16 9 O -0.57 -23.03 13.69 -3.01 -0.04 -23.07 16 10 N -0.71 -22.64 5.08 -436.93 -2.22 -24.86 16 11 C 0.12 4.17 3.11 46.18 0.14 4.32 16 12 H 0.11 3.82 7.69 -2.39 -0.02 3.80 16 13 C 0.19 8.63 4.75 86.73 0.41 9.05 16 14 N -0.62 -26.56 2.23 -691.97 -1.55 -28.10 16 15 C -0.24 -11.48 10.06 84.03 0.85 -10.63 16 16 H 0.09 4.28 7.83 -2.91 -0.02 4.26 16 17 C -0.06 -2.92 5.49 84.86 0.47 -2.46 16 18 N -0.95 -54.17 10.31 21.65 0.22 -53.94 16 19 Si 0.97 42.87 29.55 68.60 2.03 44.90 16 20 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 21 H -0.31 -14.18 7.11 99.48 0.71 -13.48 16 22 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 23 C 0.13 3.99 6.21 86.86 0.54 4.53 16 24 C 0.13 3.59 4.06 46.38 0.19 3.78 16 25 H 0.16 3.35 8.14 -2.39 -0.02 3.33 16 26 N -0.27 -8.18 2.45 -320.56 -0.79 -8.97 16 27 C -0.02 -0.58 10.01 83.49 0.84 0.26 16 28 C -0.06 -1.83 12.06 83.73 1.01 -0.82 16 29 N -0.29 -9.07 12.41 -58.25 -0.72 -9.79 16 30 N -0.11 -3.36 12.20 37.02 0.45 -2.91 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.05 1.40 7.82 -2.38 -0.02 1.38 16 37 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.05 1.57 5.95 -2.39 -0.01 1.55 16 39 H 0.12 2.17 8.14 -2.38 -0.02 2.15 16 40 H 0.11 2.24 8.14 -2.38 -0.02 2.22 16 41 H 0.40 12.02 6.72 -92.71 -0.62 11.40 16 42 H 0.02 1.12 7.27 -2.39 -0.02 1.10 16 43 H 0.00 0.26 7.51 -2.38 -0.02 0.24 16 44 H 0.24 13.99 8.31 -92.71 -0.77 13.22 16 45 H 0.07 2.13 7.86 -2.39 -0.02 2.11 16 46 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 47 H 0.19 6.68 6.81 -2.91 -0.02 6.66 16 48 H 0.21 4.60 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -68.07 386.58 3.70 -64.37 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: 0.34 Total: 32.36 kcal Atomic # 6 Polarization: 13.63 SS G_CDS: 7.50 Total: 21.13 kcal Atomic # 7 Polarization: -123.97 SS G_CDS: -4.60 Total: -128.57 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -1.57 Total: -34.19 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -68.07 3.70 -64.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129359645.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.980 kcal (2) G-P(sol) polarization free energy of solvation -68.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds