Wall clock time and date at job start Tue Mar 31 2020 19:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42899 * 114.00015 * 2 1 4 4 C 1.53000 * 109.47005 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47049 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47232 * 305.00132 * 5 4 3 7 7 C 1.53012 * 109.47190 * 64.99591 * 5 4 3 8 8 C 1.50694 * 109.47382 * 184.99493 * 5 4 3 9 9 O 1.21283 * 120.00089 * 0.02562 * 8 5 4 10 10 N 1.34775 * 120.00299 * 179.97438 * 8 5 4 11 11 C 1.46508 * 120.00145 * 180.02562 * 10 8 5 12 12 H 1.09000 * 110.63518 * 31.86046 * 11 10 8 13 13 C 1.54325 * 110.87021 * 268.61173 * 11 10 8 14 14 N 1.47018 * 107.26892 * 219.37145 * 13 11 10 15 15 C 1.36940 * 125.64856 * 178.98909 * 14 13 11 16 16 H 1.07999 * 119.99885 * 179.97438 * 15 14 13 17 17 C 1.38812 * 119.99827 * 359.97438 * 15 14 13 18 18 N 1.31613 * 120.00322 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99886 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47017 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47182 * 119.99730 * 19 17 15 22 22 H 1.48501 * 109.47146 * 239.99516 * 19 17 15 23 23 C 1.47423 * 108.70681 * 358.94202 * 14 13 11 24 24 C 1.54914 * 104.83031 * 24.12703 * 23 14 13 25 25 H 1.09002 * 111.00586 * 204.91807 * 24 23 14 26 26 N 1.46508 * 111.03460 * 81.07949 * 24 23 14 27 27 C 1.35305 * 125.86755 * 329.32234 * 26 24 23 28 28 C 1.35348 * 106.17551 * 179.90491 * 27 26 24 29 29 N 1.33776 * 106.49477 * 0.35266 * 28 27 26 30 30 N 1.28632 * 108.88589 * 359.77320 * 29 28 27 31 31 H 1.08997 * 109.47182 * 300.00198 * 1 2 3 32 32 H 1.09003 * 109.46726 * 60.00053 * 1 2 3 33 33 H 1.08995 * 109.47132 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47171 * 59.99586 * 3 2 1 35 35 H 1.09003 * 109.46707 * 299.99869 * 3 2 1 36 36 H 1.08994 * 109.47315 * 59.99800 * 4 3 2 37 37 H 1.09006 * 109.46764 * 299.99804 * 4 3 2 38 38 H 1.09000 * 109.46942 * 180.02562 * 7 5 4 39 39 H 1.08993 * 109.46766 * 300.00043 * 7 5 4 40 40 H 1.08997 * 109.46910 * 59.99836 * 7 5 4 41 41 H 0.97001 * 119.99906 * 0.02562 * 10 8 5 42 42 H 1.08992 * 109.88412 * 338.79064 * 13 11 10 43 43 H 1.08999 * 109.87974 * 99.95730 * 13 11 10 44 44 H 0.97002 * 120.00718 * 180.02562 * 18 17 15 45 45 H 1.08998 * 110.36740 * 265.29591 * 23 14 13 46 46 H 1.08994 * 110.37022 * 142.96739 * 23 14 13 47 47 H 1.08000 * 126.91261 * 0.02562 * 27 26 24 48 48 H 1.08001 * 126.75257 * 180.12152 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 0.0000 6 1 3.7668 3.1545 -0.8413 7 6 3.8087 3.2954 1.3080 8 6 5.6551 2.4656 -0.1243 9 8 6.1735 1.3722 -0.2059 10 7 6.4181 3.5763 -0.1459 11 6 7.8738 3.4629 -0.2673 12 1 8.1428 2.5892 -0.8610 13 6 8.5386 3.4035 1.1241 14 7 9.7719 4.2005 1.0529 15 6 10.6432 4.4167 2.0870 16 1 11.5257 5.0197 1.9324 17 6 10.3920 3.8609 3.3340 18 7 9.3162 3.1265 3.5226 19 14 11.5802 4.1565 4.7448 20 1 12.7019 5.0095 4.2767 21 1 10.8693 4.8386 5.8559 22 1 12.1140 2.8560 5.2231 23 6 9.9160 4.7274 -0.3164 24 6 8.4752 4.7528 -0.8851 25 1 8.4838 4.6974 -1.9736 26 7 7.7504 5.9413 -0.4282 27 6 7.9369 6.5792 0.7503 28 6 7.0672 7.6163 0.7594 29 7 6.3946 7.5581 -0.3955 30 7 6.8229 6.5545 -1.0766 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6886 1.8464 0.8899 35 1 1.6886 1.8463 -0.8900 36 1 3.8568 0.6438 -0.8908 37 1 3.8575 0.6435 0.8892 38 1 4.2517 4.2913 1.3082 39 1 2.7258 3.3798 1.3979 40 1 4.1997 2.7232 2.1493 41 1 6.0036 4.4509 -0.0810 42 1 7.8682 3.8240 1.8735 43 1 8.7787 2.3706 1.3763 44 1 9.1405 2.7384 4.3940 45 1 10.5473 4.0682 -0.9121 46 1 10.3326 5.7343 -0.2935 47 1 8.6398 6.3153 1.5267 48 1 6.9387 8.3451 1.5461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129445655.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:02 Heat of formation + Delta-G solvation = 48.469479 kcal Electronic energy + Delta-G solvation = -30713.655703 eV Core-core repulsion = 26614.285036 eV Total energy + Delta-G solvation = -4099.370667 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.95673 -39.92949 -38.30250 -37.78155 -34.83745 -34.21258 -33.42508 -31.76175 -30.55420 -29.63453 -28.67599 -27.58839 -26.49854 -25.17987 -24.61959 -22.76878 -22.21421 -21.89957 -20.46654 -20.10691 -19.64392 -17.76355 -17.30958 -16.99793 -16.47017 -16.19016 -15.81462 -15.42865 -15.05359 -15.00369 -14.65978 -14.46252 -14.16816 -13.97024 -13.63639 -13.50919 -13.19443 -12.98513 -12.64242 -12.49787 -12.33736 -11.97317 -11.86918 -11.73697 -11.40171 -11.38487 -11.31702 -11.11688 -10.98870 -10.95665 -10.86686 -10.64667 -10.55710 -10.22321 -10.02396 -9.83071 -9.79266 -9.52189 -8.97482 -8.87141 -8.69925 -7.16723 -5.93782 -3.33191 1.98721 2.62896 2.85897 2.91879 3.21564 3.27717 3.33879 3.36650 3.69218 4.27842 4.51151 4.66187 4.72195 4.80630 4.87545 4.96660 5.03703 5.06756 5.07933 5.17425 5.23876 5.28696 5.30825 5.34160 5.42454 5.43855 5.60140 5.69078 5.72332 5.74504 5.81317 5.82901 5.94246 6.05524 6.13921 6.17674 6.18661 6.23623 6.52497 6.55985 6.98308 7.04265 7.26631 7.31155 7.59678 7.69067 7.95139 8.43637 8.85069 8.93685 9.53533 10.12981 11.15967 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010914 B = 0.003559 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.919047 B = 7865.983826 C = 9248.760979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.060 3.940 4 C -0.099 4.099 5 C -0.106 4.106 6 H 0.096 0.904 7 C -0.147 4.147 8 C 0.522 3.478 9 O -0.533 6.533 10 N -0.715 5.715 11 C 0.110 3.890 12 H 0.112 0.888 13 C 0.168 3.832 14 N -0.602 5.602 15 C -0.245 4.245 16 H 0.083 0.917 17 C 0.002 3.998 18 N -0.911 5.911 19 Si 0.914 3.086 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.289 1.289 23 C 0.128 3.872 24 C 0.113 3.887 25 H 0.119 0.881 26 N -0.276 5.276 27 C -0.005 4.005 28 C -0.076 4.076 29 N -0.278 5.278 30 N -0.110 5.110 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.397 0.603 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.256 0.744 45 H 0.054 0.946 46 H 0.059 0.941 47 H 0.205 0.795 48 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.736 1.691 -6.780 13.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.016 4.016 4 C -0.137 4.137 5 C -0.127 4.127 6 H 0.114 0.886 7 C -0.205 4.205 8 C 0.308 3.692 9 O -0.409 6.409 10 N -0.366 5.366 11 C 0.003 3.997 12 H 0.130 0.870 13 C 0.043 3.957 14 N -0.329 5.329 15 C -0.372 4.372 16 H 0.101 0.899 17 C -0.196 4.196 18 N -0.557 5.557 19 Si 0.744 3.256 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.216 1.216 23 C 0.000 4.000 24 C 0.009 3.991 25 H 0.137 0.863 26 N -0.069 5.069 27 C -0.157 4.157 28 C -0.233 4.233 29 N -0.145 5.145 30 N -0.089 5.089 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.232 0.768 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.221 0.779 48 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -12.060 0.685 -7.912 14.440 hybrid contribution 0.942 0.687 1.854 2.190 sum -11.118 1.372 -6.058 12.735 Atomic orbital electron populations 1.22731 0.81213 1.02672 0.99877 1.87895 1.19510 1.28154 1.95399 1.22629 0.94217 0.84542 1.00209 1.21265 0.91976 0.95368 1.05062 1.21181 0.92428 0.98407 1.00733 0.88572 1.21849 1.02027 1.00492 0.96085 1.20406 0.88934 0.84151 0.75703 1.90715 1.74792 1.26455 1.48987 1.45833 1.06709 1.09210 1.74887 1.22862 0.79964 0.95760 1.01132 0.87017 1.21637 0.87248 0.97532 0.89327 1.44495 1.24950 1.58547 1.04948 1.19038 1.02301 1.28336 0.87526 0.89875 1.24847 0.97791 0.99109 0.97814 1.69949 1.26220 1.36594 1.22920 0.86033 0.79937 0.77527 0.82121 1.20378 1.21558 1.21583 1.21934 0.89864 0.99385 0.88800 1.23360 0.94460 0.80986 1.00290 0.86295 1.47276 1.25438 1.21190 1.13016 1.24237 1.04302 0.95128 0.92032 1.23550 0.99045 1.01976 0.98750 1.75010 1.22566 1.12166 1.04738 1.78228 1.04364 1.05049 1.21252 0.94117 0.94180 0.89701 0.92931 0.93363 0.90170 0.90119 0.92108 0.91462 0.91348 0.76774 0.92335 0.92288 0.93369 0.92845 0.92300 0.77864 0.79887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.68 10.70 -35.23 -0.38 -5.06 16 3 C 0.06 0.64 5.69 37.16 0.21 0.85 16 4 C -0.10 -1.26 4.40 -26.73 -0.12 -1.37 16 5 C -0.11 -1.33 2.72 -91.77 -0.25 -1.58 16 6 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 7 C -0.15 -1.72 8.85 37.16 0.33 -1.39 16 8 C 0.52 8.59 7.15 -10.99 -0.08 8.52 16 9 O -0.53 -10.67 15.56 5.55 0.09 -10.58 16 10 N -0.71 -11.56 4.97 -52.03 -0.26 -11.82 16 11 C 0.11 1.90 3.18 -66.09 -0.21 1.69 16 12 H 0.11 1.96 7.55 -51.93 -0.39 1.57 16 13 C 0.17 3.64 4.65 -3.07 -0.01 3.62 16 14 N -0.60 -12.87 2.17 -170.08 -0.37 -13.24 16 15 C -0.24 -5.90 10.07 -15.06 -0.15 -6.05 16 16 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 17 C 0.00 0.06 5.49 -17.43 -0.10 -0.03 16 18 N -0.91 -24.54 10.31 55.49 0.57 -23.97 16 19 Si 0.91 20.36 29.55 -169.99 -5.02 15.34 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.13 2.15 6.26 -2.53 -0.02 2.14 16 24 C 0.11 1.73 4.05 -65.78 -0.27 1.46 16 25 H 0.12 1.54 8.14 -51.93 -0.42 1.12 16 26 N -0.28 -4.42 2.34 -52.68 -0.12 -4.54 16 27 C -0.01 -0.09 10.01 -17.05 -0.17 -0.26 16 28 C -0.08 -1.17 12.05 -17.74 -0.21 -1.38 16 29 N -0.28 -4.68 12.41 30.24 0.38 -4.31 16 30 N -0.11 -1.83 12.46 60.35 0.75 -1.08 16 31 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.49 6.56 -51.93 -0.34 0.15 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 1.11 7.95 -51.93 -0.41 0.69 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.06 0.74 7.57 -51.93 -0.39 0.35 16 39 H 0.07 0.62 6.56 -51.93 -0.34 0.28 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.40 6.24 6.36 -40.82 -0.26 5.98 16 42 H 0.06 1.42 7.27 -51.93 -0.38 1.04 16 43 H 0.06 1.52 7.51 -51.93 -0.39 1.13 16 44 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 45 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.06 0.97 7.95 -51.93 -0.41 0.56 16 47 H 0.20 3.74 6.80 -52.49 -0.36 3.38 16 48 H 0.18 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 386.98 15.07 5.83 5.83 Total: -1.00 -29.68 386.98 -5.92 -35.59 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -7.45 Total: 10.25 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: 0.07 Total: 7.58 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: 0.95 Total: -58.96 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.29 Total: -15.64 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.68 -5.92 -35.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129445655.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.064 kcal (2) G-P(sol) polarization free energy of solvation -29.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds