Wall clock time and date at job start Tue Mar 31 2020 19:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42899 * 114.00015 * 2 1 4 4 C 1.53000 * 109.47005 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47049 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47232 * 305.00132 * 5 4 3 7 7 C 1.53012 * 109.47190 * 64.99591 * 5 4 3 8 8 C 1.50694 * 109.47382 * 184.99493 * 5 4 3 9 9 O 1.21283 * 120.00089 * 0.02562 * 8 5 4 10 10 N 1.34775 * 120.00299 * 179.97438 * 8 5 4 11 11 C 1.46508 * 120.00145 * 180.02562 * 10 8 5 12 12 H 1.09000 * 110.63518 * 31.86046 * 11 10 8 13 13 C 1.54325 * 110.87021 * 268.61173 * 11 10 8 14 14 N 1.47018 * 107.26892 * 219.37145 * 13 11 10 15 15 C 1.36940 * 125.64856 * 178.98909 * 14 13 11 16 16 H 1.07999 * 119.99885 * 179.97438 * 15 14 13 17 17 C 1.38812 * 119.99827 * 359.97438 * 15 14 13 18 18 N 1.31613 * 120.00322 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99886 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47017 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47182 * 119.99730 * 19 17 15 22 22 H 1.48501 * 109.47146 * 239.99516 * 19 17 15 23 23 C 1.47423 * 108.70681 * 358.94202 * 14 13 11 24 24 C 1.54914 * 104.83031 * 24.12703 * 23 14 13 25 25 H 1.09002 * 111.00586 * 204.91807 * 24 23 14 26 26 N 1.46508 * 111.03460 * 81.07949 * 24 23 14 27 27 C 1.35305 * 125.86755 * 329.32234 * 26 24 23 28 28 C 1.35348 * 106.17551 * 179.90491 * 27 26 24 29 29 N 1.33776 * 106.49477 * 0.35266 * 28 27 26 30 30 N 1.28632 * 108.88589 * 359.77320 * 29 28 27 31 31 H 1.08997 * 109.47182 * 300.00198 * 1 2 3 32 32 H 1.09003 * 109.46726 * 60.00053 * 1 2 3 33 33 H 1.08995 * 109.47132 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47171 * 59.99586 * 3 2 1 35 35 H 1.09003 * 109.46707 * 299.99869 * 3 2 1 36 36 H 1.08994 * 109.47315 * 59.99800 * 4 3 2 37 37 H 1.09006 * 109.46764 * 299.99804 * 4 3 2 38 38 H 1.09000 * 109.46942 * 180.02562 * 7 5 4 39 39 H 1.08993 * 109.46766 * 300.00043 * 7 5 4 40 40 H 1.08997 * 109.46910 * 59.99836 * 7 5 4 41 41 H 0.97001 * 119.99906 * 0.02562 * 10 8 5 42 42 H 1.08992 * 109.88412 * 338.79064 * 13 11 10 43 43 H 1.08999 * 109.87974 * 99.95730 * 13 11 10 44 44 H 0.97002 * 120.00718 * 180.02562 * 18 17 15 45 45 H 1.08998 * 110.36740 * 265.29591 * 23 14 13 46 46 H 1.08994 * 110.37022 * 142.96739 * 23 14 13 47 47 H 1.08000 * 126.91261 * 0.02562 * 27 26 24 48 48 H 1.08001 * 126.75257 * 180.12152 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 0.0000 6 1 3.7668 3.1545 -0.8413 7 6 3.8087 3.2954 1.3080 8 6 5.6551 2.4656 -0.1243 9 8 6.1735 1.3722 -0.2059 10 7 6.4181 3.5763 -0.1459 11 6 7.8738 3.4629 -0.2673 12 1 8.1428 2.5892 -0.8610 13 6 8.5386 3.4035 1.1241 14 7 9.7719 4.2005 1.0529 15 6 10.6432 4.4167 2.0870 16 1 11.5257 5.0197 1.9324 17 6 10.3920 3.8609 3.3340 18 7 9.3162 3.1265 3.5226 19 14 11.5802 4.1565 4.7448 20 1 12.7019 5.0095 4.2767 21 1 10.8693 4.8386 5.8559 22 1 12.1140 2.8560 5.2231 23 6 9.9160 4.7274 -0.3164 24 6 8.4752 4.7528 -0.8851 25 1 8.4838 4.6974 -1.9736 26 7 7.7504 5.9413 -0.4282 27 6 7.9369 6.5792 0.7503 28 6 7.0672 7.6163 0.7594 29 7 6.3946 7.5581 -0.3955 30 7 6.8229 6.5545 -1.0766 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6886 1.8464 0.8899 35 1 1.6886 1.8463 -0.8900 36 1 3.8568 0.6438 -0.8908 37 1 3.8575 0.6435 0.8892 38 1 4.2517 4.2913 1.3082 39 1 2.7258 3.3798 1.3979 40 1 4.1997 2.7232 2.1493 41 1 6.0036 4.4509 -0.0810 42 1 7.8682 3.8240 1.8735 43 1 8.7787 2.3706 1.3763 44 1 9.1405 2.7384 4.3940 45 1 10.5473 4.0682 -0.9121 46 1 10.3326 5.7343 -0.2935 47 1 8.6398 6.3153 1.5267 48 1 6.9387 8.3451 1.5461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129445655.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:01 Heat of formation + Delta-G solvation = 28.630188 kcal Electronic energy + Delta-G solvation = -30714.515999 eV Core-core repulsion = 26614.285036 eV Total energy + Delta-G solvation = -4100.230963 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.24838 -41.27447 -39.57133 -38.83073 -35.93095 -35.81429 -34.81764 -33.42992 -31.83739 -30.86706 -29.99618 -29.07439 -27.24358 -26.75699 -25.77261 -24.11824 -23.50899 -23.14533 -21.94058 -21.49442 -20.91611 -19.24258 -18.58863 -18.52797 -17.41467 -17.22577 -17.07874 -16.80945 -16.30627 -16.23537 -15.94865 -15.71518 -15.63801 -15.23623 -14.97966 -14.82485 -14.53097 -14.06313 -13.97827 -13.87495 -13.62244 -13.31039 -13.07856 -12.88946 -12.80887 -12.72227 -12.61178 -12.51978 -12.31649 -12.20459 -12.03767 -11.96311 -11.89323 -11.87991 -11.80850 -11.13907 -10.90509 -10.76083 -10.57112 -10.24855 -10.17165 -9.00404 -7.86874 -5.25874 0.67028 1.33712 1.48099 1.50356 1.53095 1.58930 1.66459 1.97867 2.47138 2.84042 3.17360 3.33989 3.39601 3.48678 3.58712 3.76610 3.82259 3.92462 3.93160 4.16730 4.21148 4.25671 4.29581 4.39397 4.44824 4.44933 4.47946 4.56286 4.57508 4.68840 4.73660 4.80040 4.81478 4.85746 4.86891 4.95523 5.09524 5.21561 5.22132 5.31784 5.43169 5.50620 5.69042 5.74441 6.09141 6.25323 6.34698 7.01240 7.11307 7.56196 7.68784 8.28339 9.21646 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010914 B = 0.003559 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.919047 B = 7865.983826 C = 9248.760979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.423 6.423 3 C 0.064 3.936 4 C -0.094 4.094 5 C -0.096 4.096 6 H 0.127 0.873 7 C -0.142 4.142 8 C 0.515 3.485 9 O -0.575 6.575 10 N -0.708 5.708 11 C 0.119 3.881 12 H 0.111 0.889 13 C 0.189 3.811 14 N -0.614 5.614 15 C -0.235 4.235 16 H 0.094 0.906 17 C -0.055 4.055 18 N -0.945 5.945 19 Si 0.972 3.028 20 H -0.262 1.262 21 H -0.295 1.295 22 H -0.303 1.303 23 C 0.127 3.873 24 C 0.127 3.873 25 H 0.156 0.844 26 N -0.274 5.274 27 C -0.019 4.019 28 C -0.063 4.063 29 N -0.290 5.290 30 N -0.110 5.110 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.099 0.901 40 H 0.045 0.955 41 H 0.402 0.598 42 H 0.026 0.974 43 H 0.005 0.995 44 H 0.244 0.756 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.185 0.815 48 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.740 3.777 -8.373 15.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.342 6.342 3 C -0.012 4.012 4 C -0.133 4.133 5 C -0.117 4.117 6 H 0.145 0.855 7 C -0.200 4.200 8 C 0.303 3.697 9 O -0.454 6.454 10 N -0.359 5.359 11 C 0.011 3.989 12 H 0.129 0.871 13 C 0.063 3.937 14 N -0.342 5.342 15 C -0.363 4.363 16 H 0.112 0.888 17 C -0.249 4.249 18 N -0.593 5.593 19 Si 0.801 3.199 20 H -0.186 1.186 21 H -0.222 1.222 22 H -0.230 1.230 23 C 0.001 3.999 24 C 0.024 3.976 25 H 0.174 0.826 26 N -0.067 5.067 27 C -0.171 4.171 28 C -0.220 4.220 29 N -0.157 5.157 30 N -0.088 5.088 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.118 0.882 40 H 0.065 0.935 41 H 0.238 0.762 42 H 0.044 0.956 43 H 0.023 0.977 44 H 0.054 0.946 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.202 0.798 48 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -13.060 2.823 -9.546 16.421 hybrid contribution 1.262 0.041 2.315 2.637 sum -11.798 2.865 -7.231 14.131 Atomic orbital electron populations 1.22935 0.79282 1.03764 1.01087 1.87850 1.21705 1.29014 1.95667 1.22611 0.92136 0.84526 1.01896 1.21179 0.94128 0.94927 1.03024 1.21195 0.89214 0.98898 1.02383 0.85488 1.21837 1.04024 0.99535 0.94582 1.21224 0.90707 0.83388 0.74365 1.90697 1.75914 1.27968 1.50805 1.45785 1.06136 1.09505 1.74501 1.22550 0.80633 0.97248 0.98447 0.87095 1.21136 0.87237 0.94134 0.91202 1.44610 1.24456 1.58566 1.06536 1.19400 1.02343 1.26604 0.87991 0.88810 1.25546 0.99257 0.99912 1.00197 1.70174 1.28171 1.38487 1.22474 0.85112 0.78597 0.76704 0.79477 1.18575 1.22171 1.23029 1.22134 0.91260 1.00050 0.86499 1.23347 0.92774 0.79568 1.01930 0.82613 1.47301 1.25429 1.21145 1.12850 1.24064 1.04906 0.96071 0.92040 1.23982 0.97601 1.01686 0.98721 1.75021 1.22976 1.12384 1.05281 1.78211 1.04261 1.05117 1.21257 0.93011 0.92775 0.88850 0.91455 0.91241 0.91730 0.92751 0.92443 0.88216 0.93545 0.76170 0.95613 0.97661 0.94634 0.90679 0.91125 0.79773 0.77088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.42 -9.67 10.70 -148.98 -1.59 -11.26 16 3 C 0.06 1.24 5.69 71.98 0.41 1.65 16 4 C -0.09 -2.39 4.40 30.59 0.13 -2.26 16 5 C -0.10 -2.31 2.72 -11.54 -0.03 -2.34 16 6 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 7 C -0.14 -3.16 8.85 71.99 0.64 -2.53 16 8 C 0.52 17.17 7.15 87.66 0.63 17.79 16 9 O -0.57 -23.98 15.56 -3.04 -0.05 -24.02 16 10 N -0.71 -22.75 4.97 -436.91 -2.17 -24.92 16 11 C 0.12 4.12 3.18 46.18 0.15 4.26 16 12 H 0.11 3.92 7.55 -2.39 -0.02 3.91 16 13 C 0.19 8.54 4.65 86.73 0.40 8.94 16 14 N -0.61 -26.45 2.17 -692.01 -1.50 -27.95 16 15 C -0.24 -11.36 10.07 84.03 0.85 -10.52 16 16 H 0.09 4.27 7.83 -2.91 -0.02 4.24 16 17 C -0.06 -2.86 5.49 84.86 0.47 -2.39 16 18 N -0.94 -53.49 10.31 21.65 0.22 -53.27 16 19 Si 0.97 42.68 29.55 68.60 2.03 44.71 16 20 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 21 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 23 C 0.13 4.04 6.26 86.86 0.54 4.58 16 24 C 0.13 3.63 4.05 46.38 0.19 3.82 16 25 H 0.16 3.43 8.14 -2.39 -0.02 3.41 16 26 N -0.27 -8.22 2.34 -320.57 -0.75 -8.97 16 27 C -0.02 -0.61 10.01 83.49 0.84 0.23 16 28 C -0.06 -1.80 12.05 83.73 1.01 -0.79 16 29 N -0.29 -9.02 12.41 -58.25 -0.72 -9.74 16 30 N -0.11 -3.37 12.46 37.02 0.46 -2.91 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.09 6.56 -2.39 -0.02 1.07 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.82 7.95 -2.39 -0.02 1.80 16 37 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.06 1.32 7.57 -2.39 -0.02 1.30 16 39 H 0.10 1.57 6.56 -2.39 -0.02 1.56 16 40 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.40 12.18 6.36 -92.71 -0.59 11.59 16 42 H 0.03 1.32 7.27 -2.39 -0.02 1.30 16 43 H 0.01 0.29 7.51 -2.39 -0.02 0.27 16 44 H 0.24 13.82 8.31 -92.71 -0.77 13.05 16 45 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.07 2.14 7.95 -2.39 -0.02 2.12 16 47 H 0.19 6.74 6.80 -2.91 -0.02 6.72 16 48 H 0.21 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -67.92 386.98 3.76 -64.15 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: 0.38 Total: 32.12 kcal Atomic # 6 Polarization: 14.60 SS G_CDS: 7.46 Total: 22.06 kcal Atomic # 7 Polarization: -123.30 SS G_CDS: -4.47 Total: -127.76 kcal Atomic # 8 Polarization: -33.65 SS G_CDS: -1.64 Total: -35.29 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -67.92 3.76 -64.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129445655.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.784 kcal (2) G-P(sol) polarization free energy of solvation -67.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds