Wall clock time and date at job start Tue Mar 31 2020 19:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00226 * 2 1 4 4 C 1.52995 * 109.47168 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47221 * 54.99919 * 4 3 2 6 6 C 1.53001 * 109.47079 * 295.00247 * 4 3 2 7 7 C 1.52997 * 109.47210 * 174.99774 * 4 3 2 8 8 C 1.50705 * 109.47426 * 184.99830 * 7 4 3 9 9 O 1.21278 * 119.99459 * 0.02562 * 8 7 4 10 10 N 1.34778 * 119.99949 * 179.97438 * 8 7 4 11 11 C 1.47459 * 125.63035 * 359.91967 * 10 8 7 12 12 C 1.54911 * 104.81307 * 204.13890 * 11 10 8 13 13 H 1.09004 * 110.99923 * 81.13240 * 12 11 10 14 14 N 1.46490 * 111.00591 * 204.95079 * 12 11 10 15 15 C 1.36935 * 120.00121 * 270.41461 * 14 12 11 16 16 H 1.07997 * 120.00139 * 0.02562 * 15 14 12 17 17 C 1.38816 * 120.00401 * 180.02562 * 15 14 12 18 18 N 1.31624 * 119.99569 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00172 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47055 * 180.02562 * 19 17 15 21 21 H 1.48505 * 109.46653 * 299.99639 * 19 17 15 22 22 H 1.48495 * 109.47483 * 60.00002 * 19 17 15 23 23 C 1.55160 * 101.61287 * 323.04762 * 12 11 10 24 24 H 1.09004 * 110.71555 * 154.02706 * 23 12 11 25 25 N 1.46507 * 110.71667 * 277.11386 * 23 12 11 26 26 C 1.35305 * 125.86820 * 84.72095 * 25 23 12 27 27 C 1.35344 * 106.17931 * 179.90395 * 26 25 23 28 28 N 1.33779 * 106.49480 * 0.35154 * 27 26 25 29 29 N 1.28636 * 108.88157 * 359.77432 * 28 27 26 30 30 C 1.47024 * 125.64362 * 180.02562 * 10 8 7 31 31 H 1.08998 * 109.47136 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47351 * 300.00083 * 1 2 3 33 33 H 1.09008 * 109.47214 * 60.00194 * 1 2 3 34 34 H 1.09008 * 109.47066 * 59.99384 * 3 2 1 35 35 H 1.09006 * 109.46822 * 299.99900 * 3 2 1 36 36 H 1.09004 * 109.46557 * 180.02562 * 6 4 3 37 37 H 1.09003 * 109.46728 * 299.99140 * 6 4 3 38 38 H 1.08988 * 109.47301 * 59.99869 * 6 4 3 39 39 H 1.09010 * 109.46932 * 65.00043 * 7 4 3 40 40 H 1.08995 * 109.47416 * 305.00572 * 7 4 3 41 41 H 1.09008 * 110.35088 * 85.32523 * 11 10 8 42 42 H 1.09002 * 110.40628 * 322.98833 * 11 10 8 43 43 H 0.97000 * 120.00577 * 90.42061 * 14 12 11 44 44 H 0.97001 * 119.99885 * 359.97438 * 18 17 15 45 45 H 1.08001 * 126.91140 * 0.02562 * 26 25 23 46 46 H 1.08000 * 126.75738 * 180.12170 * 27 26 25 47 47 H 1.09003 * 109.88172 * 59.48649 * 30 10 8 48 48 H 1.08997 * 110.00870 * 298.39431 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8515 0.5681 -0.8409 6 6 3.9952 0.5367 1.3083 7 6 4.1574 2.5767 -0.1251 8 6 5.6540 2.4491 -0.2480 9 8 6.1720 1.3526 -0.2366 10 7 6.4166 3.5535 -0.3716 11 6 5.9197 4.9415 -0.4026 12 6 7.0157 5.7379 -1.1539 13 1 6.9126 5.6218 -2.2328 14 7 6.9889 7.1529 -0.7758 15 6 6.2062 8.0334 -1.4738 16 1 5.6084 7.6846 -2.3028 17 6 6.1812 9.3744 -1.1159 18 7 6.9103 9.7996 -0.1059 19 14 5.1130 10.5754 -2.0677 20 1 5.2636 11.9358 -1.4916 21 1 5.5347 10.5919 -3.4915 22 1 3.6921 10.1535 -1.9770 23 6 8.3084 5.0496 -0.6416 24 1 9.1141 5.1524 -1.3686 25 7 8.7098 5.6003 0.6553 26 6 8.2442 5.2052 1.8628 27 6 8.8788 5.9710 2.7807 28 7 9.6851 6.7920 2.0984 29 7 9.5617 6.5470 0.8416 30 6 7.8811 3.5735 -0.4999 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8901 34 1 1.6886 1.8464 0.8900 35 1 1.6886 1.8463 -0.8901 36 1 5.0818 0.4511 1.3088 37 1 3.6793 1.1533 2.1498 38 1 3.5521 -0.4550 1.3978 39 1 3.9143 3.1646 0.7601 40 1 3.7611 3.0731 -1.0109 41 1 5.8004 5.3242 0.6111 42 1 4.9744 4.9948 -0.9428 43 1 7.5256 7.4662 -0.0311 44 1 7.4647 9.1759 0.3885 45 1 7.5146 4.4326 2.0555 46 1 8.7555 5.9303 3.8528 47 1 8.1834 3.0133 -1.3847 48 1 8.3393 3.1388 0.3885 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130066975.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:23 Heat of formation + Delta-G solvation = 43.962476 kcal Electronic energy + Delta-G solvation = -30304.736451 eV Core-core repulsion = 26205.170346 eV Total energy + Delta-G solvation = -4099.566105 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.05155 -40.32312 -38.60026 -37.87084 -34.91582 -34.57857 -33.76290 -31.35783 -30.78237 -29.98351 -28.04932 -27.65128 -27.42640 -25.72197 -24.24193 -23.59028 -22.39334 -21.89712 -20.85673 -20.24415 -19.22982 -17.96025 -17.61519 -17.20648 -16.69084 -16.31158 -16.11035 -15.81517 -15.42827 -14.95811 -14.81867 -14.58314 -14.52929 -13.96772 -13.74017 -13.73022 -13.53675 -13.26884 -13.13753 -12.79664 -12.45225 -12.29622 -12.23322 -11.87108 -11.80787 -11.44789 -11.31627 -11.24470 -11.11209 -10.89640 -10.86347 -10.82433 -10.59930 -10.12059 -9.95085 -9.92246 -9.80652 -9.38726 -9.20724 -9.07825 -8.75970 -7.37135 -6.29184 -3.36582 1.88469 2.46118 2.53625 2.75873 2.91437 3.40398 3.43685 3.50515 3.62201 3.99152 4.39369 4.46956 4.55465 4.62251 4.72285 4.77740 4.80199 4.89598 5.01653 5.06471 5.07520 5.16503 5.17862 5.18551 5.27240 5.33681 5.36696 5.40840 5.44832 5.49743 5.50369 5.53488 5.66230 5.69716 5.86216 5.95746 5.99474 6.05393 6.12345 6.21269 6.31823 6.41015 6.84812 6.87094 7.35993 7.55456 8.03908 8.54484 8.84292 8.92768 9.80709 9.89458 11.16894 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009760 B = 0.003446 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2868.169237 B = 8124.215375 C =10159.027926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.064 3.936 4 C -0.073 4.073 5 H 0.087 0.913 6 C -0.149 4.149 7 C -0.132 4.132 8 C 0.534 3.466 9 O -0.540 6.540 10 N -0.618 5.618 11 C 0.066 3.934 12 C 0.173 3.827 13 H 0.092 0.908 14 N -0.716 5.716 15 C -0.358 4.358 16 H 0.070 0.930 17 C -0.032 4.032 18 N -0.926 5.926 19 Si 1.082 2.918 20 H -0.283 1.283 21 H -0.292 1.292 22 H -0.293 1.293 23 C 0.111 3.889 24 H 0.132 0.868 25 N -0.271 5.271 26 C -0.050 4.050 27 C -0.055 4.055 28 N -0.271 5.271 29 N -0.070 5.070 30 C 0.107 3.893 31 H 0.085 0.915 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.074 0.926 37 H 0.045 0.955 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.376 0.624 44 H 0.260 0.740 45 H 0.179 0.821 46 H 0.185 0.815 47 H 0.094 0.906 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.964 -17.614 1.100 19.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.012 4.012 4 C -0.092 4.092 5 H 0.105 0.895 6 C -0.206 4.206 7 C -0.172 4.172 8 C 0.323 3.677 9 O -0.417 6.417 10 N -0.353 5.353 11 C -0.060 4.060 12 C 0.058 3.942 13 H 0.110 0.890 14 N -0.358 5.358 15 C -0.488 4.488 16 H 0.088 0.912 17 C -0.232 4.232 18 N -0.568 5.568 19 Si 0.911 3.089 20 H -0.208 1.208 21 H -0.220 1.220 22 H -0.221 1.221 23 C 0.007 3.993 24 H 0.150 0.850 25 N -0.065 5.065 26 C -0.200 4.200 27 C -0.212 4.212 28 N -0.137 5.137 29 N -0.050 5.050 30 C -0.017 4.017 31 H 0.103 0.897 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.212 0.788 44 H 0.071 0.929 45 H 0.196 0.804 46 H 0.202 0.798 47 H 0.112 0.888 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.240 -15.819 0.148 17.398 hybrid contribution -0.608 -1.986 0.809 2.229 sum -7.849 -17.805 0.957 19.482 Atomic orbital electron populations 1.22737 0.81126 1.02678 0.99992 1.87875 1.19515 1.27920 1.95404 1.22606 0.93668 0.84660 1.00296 1.20815 0.92066 0.95189 1.01117 0.89502 1.21887 1.02995 1.00580 0.95115 1.21624 0.91756 0.98997 1.04811 1.20228 0.89001 0.82644 0.75806 1.90679 1.74920 1.25568 1.50541 1.48572 1.06638 1.07322 1.72794 1.23669 1.00954 0.79144 1.02240 1.21599 0.88355 0.86057 0.98184 0.88998 1.42355 1.53898 1.00989 1.38584 1.19969 1.23297 0.91572 1.13914 0.91223 1.25910 1.01604 0.96013 0.99650 1.70860 1.28183 1.37395 1.20365 0.83240 0.74680 0.76248 0.74709 1.20823 1.21956 1.22053 1.23214 1.01443 0.93095 0.81528 0.84992 1.47292 1.27466 1.24298 1.07412 1.23435 1.05706 1.06026 0.84877 1.23513 0.99333 0.97130 1.01227 1.75138 1.20450 1.20971 0.97095 1.78413 1.09282 1.04382 1.12895 1.22110 0.82043 0.93739 1.03820 0.89696 0.94096 0.94089 0.93114 0.93170 0.90719 0.93543 0.92184 0.88553 0.88503 0.91030 0.89882 0.78759 0.92853 0.80370 0.79783 0.88763 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.00 10.24 -35.23 -0.36 -4.36 16 3 C 0.06 0.58 5.32 37.16 0.20 0.78 16 4 C -0.07 -0.75 2.27 -90.62 -0.21 -0.95 16 5 H 0.09 1.02 7.95 -51.93 -0.41 0.61 16 6 C -0.15 -1.60 8.83 37.16 0.33 -1.27 16 7 C -0.13 -1.30 4.18 -27.88 -0.12 -1.41 16 8 C 0.53 6.63 7.57 -10.98 -0.08 6.55 16 9 O -0.54 -8.11 14.29 5.56 0.08 -8.03 16 10 N -0.62 -7.53 3.33 -170.49 -0.57 -8.10 16 11 C 0.07 0.92 5.97 -2.51 -0.01 0.91 16 12 C 0.17 2.87 3.56 -65.78 -0.23 2.64 16 13 H 0.09 1.48 8.11 -51.93 -0.42 1.06 16 14 N -0.72 -16.30 5.21 -51.35 -0.27 -16.57 16 15 C -0.36 -9.22 9.97 -15.06 -0.15 -9.37 16 16 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 17 C -0.03 -0.88 5.50 -17.43 -0.10 -0.97 16 18 N -0.93 -28.17 13.70 55.49 0.76 -27.41 16 19 Si 1.08 24.56 29.92 -169.99 -5.09 19.47 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 23 C 0.11 1.57 3.97 -66.09 -0.26 1.31 16 24 H 0.13 1.73 8.14 -51.93 -0.42 1.30 16 25 N -0.27 -4.44 2.40 -52.98 -0.13 -4.56 16 26 C -0.05 -0.73 9.34 -17.05 -0.16 -0.89 16 27 C -0.05 -0.86 12.05 -17.74 -0.21 -1.07 16 28 N -0.27 -5.30 12.41 30.23 0.38 -4.92 16 29 N -0.07 -1.39 12.22 60.35 0.74 -0.66 16 30 C 0.11 1.26 5.90 -3.07 -0.02 1.24 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.04 0.26 8.14 -51.92 -0.42 -0.17 16 34 H 0.05 0.42 8.14 -51.92 -0.42 -0.01 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.94 5.95 -51.93 -0.31 0.63 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.66 7.82 -51.94 -0.41 0.25 16 39 H 0.10 0.86 8.14 -51.92 -0.42 0.43 16 40 H 0.10 0.84 7.84 -51.93 -0.41 0.43 16 41 H 0.07 1.10 7.58 -51.92 -0.39 0.71 16 42 H 0.08 1.10 7.48 -51.93 -0.39 0.72 16 43 H 0.38 9.31 4.76 -40.82 -0.19 9.12 16 44 H 0.26 8.04 6.77 -40.82 -0.28 7.76 16 45 H 0.18 2.15 7.71 -52.49 -0.40 1.75 16 46 H 0.19 2.19 8.06 -52.49 -0.42 1.76 16 47 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.08 0.93 7.18 -51.93 -0.37 0.56 16 LS Contribution 388.84 15.07 5.86 5.86 Total: -1.00 -33.85 388.84 -5.94 -39.78 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -7.42 Total: 10.67 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 0.08 Total: -1.18 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: 0.91 Total: -62.21 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -0.28 Total: -12.39 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -5.09 Total: 19.47 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.85 -5.94 -39.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130066975.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.747 kcal (2) G-P(sol) polarization free energy of solvation -33.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds