Wall clock time and date at job start Tue Mar 31 2020 19:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 113.99947 * 2 1 4 4 C 1.52999 * 109.47223 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46910 * 304.99576 * 4 3 2 6 6 C 1.52995 * 109.47415 * 64.99670 * 4 3 2 7 7 C 1.53003 * 109.47201 * 184.99819 * 4 3 2 8 8 C 1.50705 * 109.47265 * 174.99795 * 7 4 3 9 9 O 1.21288 * 119.99424 * 0.02562 * 8 7 4 10 10 N 1.34774 * 120.00266 * 179.97438 * 8 7 4 11 11 C 1.47019 * 125.64661 * 359.97438 * 10 8 7 12 12 C 1.54324 * 107.27357 * 178.97493 * 11 10 8 13 13 H 1.08999 * 110.71977 * 96.34351 * 12 11 10 14 14 N 1.46490 * 110.72127 * 219.44478 * 12 11 10 15 15 C 1.36935 * 120.00121 * 271.15198 * 14 12 11 16 16 H 1.07997 * 120.00139 * 0.02562 * 15 14 12 17 17 C 1.38816 * 120.00401 * 180.02562 * 15 14 12 18 18 N 1.31624 * 119.99569 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00172 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47055 * 180.02562 * 19 17 15 21 21 H 1.48505 * 109.46653 * 299.99639 * 19 17 15 22 22 H 1.48495 * 109.47483 * 60.00002 * 19 17 15 23 23 C 1.55155 * 103.09699 * 337.89886 * 12 11 10 24 24 H 1.09008 * 111.00198 * 153.48670 * 23 12 11 25 25 N 1.46500 * 111.00254 * 277.33408 * 23 12 11 26 26 C 1.35309 * 125.86669 * 84.71885 * 25 23 12 27 27 C 1.35352 * 106.17389 * 179.90442 * 26 25 23 28 28 N 1.33765 * 106.49788 * 0.35078 * 27 26 25 29 29 N 1.28631 * 108.88727 * 359.77664 * 28 27 26 30 30 C 1.47423 * 125.64984 * 180.02562 * 10 8 7 31 31 H 1.09002 * 109.47182 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47304 * 300.00772 * 1 2 3 33 33 H 1.09000 * 109.46872 * 60.00811 * 1 2 3 34 34 H 1.09003 * 109.47977 * 59.99402 * 3 2 1 35 35 H 1.09006 * 109.46826 * 299.99278 * 3 2 1 36 36 H 1.09001 * 109.47640 * 180.02562 * 6 4 3 37 37 H 1.09002 * 109.46895 * 300.00172 * 6 4 3 38 38 H 1.09002 * 109.47158 * 60.00059 * 6 4 3 39 39 H 1.08992 * 109.47396 * 54.99915 * 7 4 3 40 40 H 1.09001 * 109.47061 * 294.99510 * 7 4 3 41 41 H 1.09000 * 109.88588 * 59.55890 * 11 10 8 42 42 H 1.09007 * 110.01334 * 298.46579 * 11 10 8 43 43 H 0.97000 * 120.00577 * 91.15797 * 14 12 11 44 44 H 0.97001 * 119.99885 * 359.97438 * 18 17 15 45 45 H 1.08000 * 126.91630 * 0.02562 * 26 25 23 46 46 H 1.08002 * 126.75167 * 180.12577 * 27 26 25 47 47 H 1.08998 * 110.36291 * 322.93285 * 30 10 8 48 48 H 1.08999 * 110.36601 * 85.14353 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8507 0.5686 0.8428 6 6 3.9963 0.5364 -1.3063 7 6 4.1572 2.5769 0.1263 8 6 5.6537 2.4495 0.2505 9 8 6.1719 1.3529 0.2391 10 7 6.4163 3.5539 0.3732 11 6 5.9216 4.9381 0.3998 12 6 7.1466 5.8592 0.5803 13 1 7.4906 6.2365 -0.3827 14 7 6.8334 6.9665 1.4868 15 6 6.3087 8.1300 0.9909 16 1 6.1253 8.2312 -0.0686 17 6 6.0124 9.1795 1.8498 18 7 6.2363 9.0563 3.1410 19 14 5.2960 10.7664 1.1733 20 1 5.0717 11.7227 2.2871 21 1 6.2431 11.3597 0.1954 22 1 4.0043 10.4788 0.4995 23 6 8.2055 4.9164 1.2104 24 1 9.2159 5.2527 0.9774 25 7 8.0128 4.8035 2.6583 26 6 7.1639 3.9537 3.2811 27 6 7.3075 4.1820 4.6075 28 7 8.2195 5.1530 4.7292 29 7 8.6178 5.4995 3.5563 30 6 7.8848 3.5742 0.5020 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5137 -0.8901 34 1 1.6886 1.8465 0.8899 35 1 1.6886 1.8463 -0.8901 36 1 5.0829 0.4499 -1.3057 37 1 3.5533 -0.4555 -1.3958 38 1 3.6810 1.1525 -2.1484 39 1 3.7603 3.0736 1.0116 40 1 3.9149 3.1644 -0.7593 41 1 5.2328 5.0697 1.2343 42 1 5.4168 5.1720 -0.5376 43 1 6.9978 6.8756 2.4385 44 1 6.6080 8.2321 3.4923 45 1 6.5057 3.2360 2.8141 46 1 6.7855 3.6815 5.4097 47 1 8.2241 2.7339 1.1076 48 1 8.3523 3.5448 -0.4822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130066977.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:25 Heat of formation + Delta-G solvation = 44.594786 kcal Electronic energy + Delta-G solvation = -30542.294624 eV Core-core repulsion = 26442.755938 eV Total energy + Delta-G solvation = -4099.538686 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.01084 -40.32832 -38.58771 -37.85665 -34.90785 -34.56947 -33.69471 -31.39856 -30.71143 -29.98528 -28.03806 -27.62733 -27.41563 -25.70832 -24.22080 -23.57283 -22.33029 -21.92163 -20.80300 -20.28704 -19.23413 -17.84983 -17.64747 -17.20793 -16.68049 -16.30071 -16.04998 -15.90204 -15.42931 -14.93722 -14.75494 -14.60776 -14.41730 -14.14123 -13.78285 -13.55057 -13.50225 -13.32689 -12.94122 -12.88187 -12.36894 -12.30949 -12.18132 -11.91497 -11.79959 -11.46159 -11.32590 -11.20392 -11.10672 -10.87887 -10.85972 -10.82950 -10.56874 -10.11698 -9.93984 -9.91754 -9.79294 -9.37623 -9.18734 -9.04442 -8.75333 -7.36839 -6.28338 -3.35752 1.92084 2.49295 2.55446 2.73361 2.94362 3.40720 3.43923 3.51779 3.62508 4.00651 4.38824 4.47367 4.56784 4.63164 4.78199 4.79055 4.80126 4.90751 5.03194 5.08545 5.12444 5.17154 5.18487 5.20619 5.31783 5.34863 5.37004 5.39445 5.45530 5.47290 5.53436 5.53695 5.66413 5.71677 5.90425 5.96445 6.05204 6.05580 6.13144 6.22876 6.31834 6.44142 6.88433 6.88794 7.35751 7.56323 8.02811 8.55313 8.87401 8.93776 9.81684 9.90607 11.17691 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009905 B = 0.003499 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2826.261566 B = 8000.256349 C = 9413.379253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.064 3.936 4 C -0.073 4.073 5 H 0.087 0.913 6 C -0.148 4.148 7 C -0.133 4.133 8 C 0.532 3.468 9 O -0.539 6.539 10 N -0.619 5.619 11 C 0.067 3.933 12 C 0.173 3.827 13 H 0.093 0.907 14 N -0.718 5.718 15 C -0.358 4.358 16 H 0.070 0.930 17 C -0.032 4.032 18 N -0.926 5.926 19 Si 1.082 2.918 20 H -0.283 1.283 21 H -0.293 1.293 22 H -0.293 1.293 23 C 0.110 3.890 24 H 0.134 0.866 25 N -0.269 5.269 26 C -0.044 4.044 27 C -0.057 4.057 28 N -0.271 5.271 29 N -0.071 5.071 30 C 0.105 3.895 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.040 0.960 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.045 0.955 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.376 0.624 44 H 0.260 0.740 45 H 0.177 0.823 46 H 0.184 0.816 47 H 0.089 0.911 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.154 -15.935 -8.501 19.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.012 4.012 4 C -0.092 4.092 5 H 0.105 0.895 6 C -0.205 4.205 7 C -0.172 4.172 8 C 0.322 3.678 9 O -0.416 6.416 10 N -0.354 5.354 11 C -0.059 4.059 12 C 0.058 3.942 13 H 0.110 0.890 14 N -0.360 5.360 15 C -0.488 4.488 16 H 0.088 0.912 17 C -0.232 4.232 18 N -0.568 5.568 19 Si 0.911 3.089 20 H -0.208 1.208 21 H -0.220 1.220 22 H -0.221 1.221 23 C 0.005 3.995 24 H 0.151 0.849 25 N -0.063 5.063 26 C -0.195 4.195 27 C -0.215 4.215 28 N -0.137 5.137 29 N -0.051 5.051 30 C -0.019 4.019 31 H 0.103 0.897 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.212 0.788 44 H 0.071 0.929 45 H 0.194 0.806 46 H 0.201 0.799 47 H 0.107 0.893 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.362 -14.007 -8.026 17.010 hybrid contribution -0.689 -2.053 -0.527 2.228 sum -6.051 -16.059 -8.553 19.174 Atomic orbital electron populations 1.22737 0.81124 1.02676 0.99998 1.87874 1.19519 1.27907 1.95405 1.22604 0.93661 0.84665 1.00305 1.20816 0.92086 0.95168 1.01115 0.89487 1.21883 1.02984 1.00556 0.95104 1.21626 0.91768 0.98997 1.04849 1.20258 0.89048 0.82706 0.75833 1.90686 1.74929 1.25516 1.50515 1.48649 1.06845 1.07251 1.72693 1.23465 1.00659 0.79275 1.02484 1.21489 0.89831 0.87498 0.95370 0.88962 1.42418 1.76014 1.11871 1.05689 1.19971 1.41169 0.93109 0.94507 0.91223 1.25905 1.00258 1.02221 0.94828 1.70858 1.44897 1.28867 1.12197 0.83241 0.75595 0.75238 0.74802 1.20843 1.21965 1.22071 1.23418 1.03955 0.97946 0.74149 0.84869 1.47192 1.26692 1.24099 1.08281 1.23460 1.01067 1.01178 0.93833 1.23512 1.01865 1.00404 0.95679 1.75120 1.12157 1.11932 1.14471 1.78408 1.18765 1.16002 0.91922 1.22477 0.82172 0.96035 1.01245 0.89693 0.94057 0.94125 0.93139 0.93148 0.90712 0.92201 0.93581 0.88554 0.88520 0.90593 0.90901 0.78762 0.92855 0.80584 0.79853 0.89290 0.88495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.08 10.24 -35.23 -0.36 -4.44 16 3 C 0.06 0.60 5.32 37.16 0.20 0.80 16 4 C -0.07 -0.76 2.27 -90.62 -0.21 -0.96 16 5 H 0.09 1.04 7.96 -51.93 -0.41 0.62 16 6 C -0.15 -1.60 8.83 37.16 0.33 -1.27 16 7 C -0.13 -1.33 4.37 -27.88 -0.12 -1.45 16 8 C 0.53 6.60 7.35 -10.98 -0.08 6.52 16 9 O -0.54 -8.04 14.22 5.55 0.08 -7.96 16 10 N -0.62 -7.53 2.18 -170.38 -0.37 -7.90 16 11 C 0.07 0.94 5.87 -3.07 -0.02 0.92 16 12 C 0.17 2.84 3.46 -66.10 -0.23 2.61 16 13 H 0.09 1.43 8.11 -51.93 -0.42 1.01 16 14 N -0.72 -16.33 5.12 -51.66 -0.26 -16.60 16 15 C -0.36 -9.21 9.97 -15.06 -0.15 -9.36 16 16 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 17 C -0.03 -0.89 5.50 -17.43 -0.10 -0.98 16 18 N -0.93 -28.25 13.70 55.49 0.76 -27.49 16 19 Si 1.08 24.58 29.92 -169.99 -5.09 19.50 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 23 C 0.11 1.55 4.07 -65.67 -0.27 1.28 16 24 H 0.13 1.71 8.14 -51.92 -0.42 1.29 16 25 N -0.27 -4.52 2.44 -52.57 -0.13 -4.65 16 26 C -0.04 -0.69 10.02 -17.05 -0.17 -0.86 16 27 C -0.06 -0.94 12.05 -17.74 -0.21 -1.15 16 28 N -0.27 -5.43 12.41 30.23 0.38 -5.05 16 29 N -0.07 -1.45 12.23 60.35 0.74 -0.71 16 30 C 0.10 1.21 5.88 -2.41 -0.01 1.19 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.93 5.95 -51.93 -0.31 0.62 16 37 H 0.06 0.66 7.82 -51.93 -0.41 0.25 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.08 1.22 8.03 -51.93 -0.42 0.80 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.38 9.37 4.78 -40.82 -0.20 9.17 16 44 H 0.26 8.08 6.77 -40.82 -0.28 7.80 16 45 H 0.18 2.41 6.81 -52.49 -0.36 2.05 16 46 H 0.18 2.32 8.06 -52.49 -0.42 1.90 16 47 H 0.09 1.07 7.76 -51.93 -0.40 0.66 16 48 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 389.18 15.07 5.86 5.86 Total: -1.00 -33.88 389.18 -5.80 -39.69 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -7.48 Total: 11.12 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 0.07 Total: -1.37 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: 1.11 Total: -62.39 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.28 Total: -12.40 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -5.09 Total: 19.50 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.88 -5.80 -39.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130066977.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.281 kcal (2) G-P(sol) polarization free energy of solvation -33.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds