Wall clock time and date at job start Tue Mar 31 2020 19:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42906 * 113.99755 * 2 1 4 4 C 1.52996 * 109.47235 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47466 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.46755 * 305.00102 * 5 4 3 7 7 C 1.53004 * 109.47089 * 64.99456 * 5 4 3 8 8 C 1.50692 * 109.47456 * 184.99716 * 5 4 3 9 9 O 1.21287 * 119.99985 * 359.97438 * 8 5 4 10 10 N 1.34780 * 120.00224 * 180.02562 * 8 5 4 11 11 C 1.47419 * 125.64726 * 359.95103 * 10 8 5 12 12 C 1.54906 * 104.83392 * 204.16683 * 11 10 8 13 13 H 1.08999 * 111.00225 * 81.07063 * 12 11 10 14 14 N 1.46508 * 111.00483 * 204.91766 * 12 11 10 15 15 C 1.36932 * 119.99623 * 267.19624 * 14 12 11 16 16 H 1.07999 * 120.00685 * 0.02562 * 15 14 12 17 17 C 1.38821 * 119.99491 * 180.02562 * 15 14 12 18 18 N 1.31619 * 120.00103 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99825 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47229 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47120 * 120.00334 * 19 17 15 22 22 H 1.48497 * 109.46966 * 239.99867 * 19 17 15 23 23 C 1.55149 * 101.58282 * 322.99466 * 12 11 10 24 24 H 1.09000 * 110.87451 * 153.93915 * 23 12 11 25 25 N 1.46499 * 110.71945 * 277.13708 * 23 12 11 26 26 C 1.35311 * 125.87102 * 80.27072 * 25 23 12 27 27 C 1.35349 * 106.18014 * 180.18691 * 26 25 23 28 28 N 1.33776 * 106.49589 * 359.58896 * 27 26 25 29 29 N 1.28634 * 108.88224 * 0.26432 * 28 27 26 30 30 C 1.47021 * 125.64670 * 180.02562 * 10 8 5 31 31 H 1.09001 * 109.47618 * 300.00060 * 1 2 3 32 32 H 1.09000 * 109.47420 * 59.99960 * 1 2 3 33 33 H 1.09005 * 109.47058 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47035 * 59.99847 * 3 2 1 35 35 H 1.09003 * 109.47263 * 300.00450 * 3 2 1 36 36 H 1.09000 * 109.47687 * 59.99692 * 4 3 2 37 37 H 1.09003 * 109.46910 * 300.00112 * 4 3 2 38 38 H 1.08998 * 109.47109 * 180.02562 * 7 5 4 39 39 H 1.09002 * 109.47427 * 300.00393 * 7 5 4 40 40 H 1.09006 * 109.46951 * 60.00007 * 7 5 4 41 41 H 1.09002 * 110.37027 * 323.01203 * 11 10 8 42 42 H 1.09007 * 110.36440 * 85.21768 * 11 10 8 43 43 H 0.96996 * 119.99504 * 87.20090 * 14 12 11 44 44 H 0.96997 * 120.00309 * 180.02562 * 18 17 15 45 45 H 1.08005 * 126.91425 * 0.04514 * 26 25 23 46 46 H 1.08002 * 126.75754 * 179.85677 * 27 26 25 47 47 H 1.08989 * 109.88522 * 59.48430 * 30 10 8 48 48 H 1.09005 * 109.88138 * 298.31176 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 6 4.1576 2.5825 0.0000 6 1 3.7665 3.1547 -0.8413 7 6 3.8085 3.2956 1.3079 8 6 5.6549 2.4659 -0.1244 9 8 6.1733 1.3724 -0.2051 10 7 6.4180 3.5767 -0.1449 11 6 5.9215 4.9619 -0.0554 12 6 7.0213 5.8215 -0.7271 13 1 6.9246 5.8010 -1.8126 14 7 6.9918 7.1977 -0.2254 15 6 6.2646 8.1517 -0.8858 16 1 5.7125 7.8896 -1.7762 17 6 6.2371 9.4558 -0.4107 18 7 6.9103 9.7753 0.6743 19 14 5.2445 10.7571 -1.3111 20 1 4.5836 10.1462 -2.4923 21 1 4.2125 11.3118 -0.3988 22 1 6.1480 11.8477 -1.7577 23 6 8.3110 5.0903 -0.2697 24 1 9.1223 5.2537 -0.9790 25 7 8.7040 5.5240 1.0733 26 6 8.1709 5.0836 2.2364 27 6 8.8201 5.7447 3.2230 28 7 9.7134 6.5399 2.6236 29 7 9.6193 6.3857 1.3499 30 6 7.8832 3.6076 -0.2619 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6884 1.8464 0.8900 35 1 1.6884 1.8465 -0.8900 36 1 3.8567 0.6441 -0.8908 37 1 3.8573 0.6437 0.8891 38 1 4.2514 4.2916 1.3082 39 1 2.7255 3.3800 1.3979 40 1 4.1995 2.7234 2.1493 41 1 4.9793 5.0628 -0.5939 42 1 5.7945 5.2527 0.9875 43 1 7.4874 7.4329 0.5745 44 1 6.8908 10.6863 1.0065 45 1 7.3838 4.3534 2.3538 46 1 8.6532 5.6461 4.2855 47 1 8.1911 3.1278 -1.1908 48 1 8.3338 3.0964 0.5890 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130129391.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:51 Heat of formation + Delta-G solvation = 44.660967 kcal Electronic energy + Delta-G solvation = -30476.871673 eV Core-core repulsion = 26377.335856 eV Total energy + Delta-G solvation = -4099.535817 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.90546 -40.37197 -38.41668 -37.80691 -35.08082 -34.37386 -33.56287 -31.35080 -30.62651 -30.10873 -28.84627 -27.81963 -26.58596 -25.48643 -24.13509 -23.66631 -22.25776 -21.97818 -21.13368 -20.19527 -19.17840 -17.83040 -17.50079 -17.17984 -16.64313 -16.33058 -15.84461 -15.63232 -15.31300 -14.89221 -14.81003 -14.69521 -14.42993 -13.83285 -13.81701 -13.53352 -13.36402 -13.23030 -13.08685 -12.71446 -12.55775 -12.34626 -12.03974 -11.86902 -11.68887 -11.45670 -11.23478 -11.20673 -11.10942 -11.09157 -11.03529 -10.93310 -10.49395 -10.24075 -10.03020 -9.94046 -9.82553 -9.64278 -9.19486 -8.93171 -8.70691 -7.31276 -5.97256 -3.33650 2.02646 2.54976 2.61103 2.82828 3.06162 3.30329 3.35364 3.39151 3.51535 4.08297 4.37924 4.41376 4.60114 4.66134 4.76111 4.83089 4.89802 4.94107 4.97840 5.07976 5.11171 5.14124 5.18056 5.21446 5.28223 5.36196 5.38456 5.43322 5.48035 5.58142 5.61515 5.62701 5.66644 5.79563 5.81514 5.91033 6.02308 6.06736 6.11981 6.19233 6.29567 6.54190 6.88208 6.98690 7.41530 7.47787 8.07517 8.15309 8.98668 9.28388 9.75539 10.09813 11.22487 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009762 B = 0.003575 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.527154 B = 7829.295967 C = 9767.160003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.059 3.941 4 C -0.098 4.098 5 C -0.102 4.102 6 H 0.100 0.900 7 C -0.158 4.158 8 C 0.537 3.463 9 O -0.544 6.544 10 N -0.615 5.615 11 C 0.064 3.936 12 C 0.166 3.834 13 H 0.093 0.907 14 N -0.704 5.704 15 C -0.267 4.267 16 H 0.076 0.924 17 C 0.001 3.999 18 N -0.915 5.915 19 Si 0.910 3.090 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.289 1.289 23 C 0.112 3.888 24 H 0.132 0.868 25 N -0.269 5.269 26 C -0.050 4.050 27 C -0.055 4.055 28 N -0.272 5.272 29 N -0.066 5.066 30 C 0.106 3.894 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.393 0.607 44 H 0.260 0.740 45 H 0.177 0.823 46 H 0.183 0.817 47 H 0.093 0.907 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.220 -16.211 -0.095 18.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.017 4.017 4 C -0.136 4.136 5 C -0.123 4.123 6 H 0.118 0.882 7 C -0.215 4.215 8 C 0.326 3.674 9 O -0.421 6.421 10 N -0.350 5.350 11 C -0.062 4.062 12 C 0.051 3.949 13 H 0.111 0.889 14 N -0.344 5.344 15 C -0.397 4.397 16 H 0.094 0.906 17 C -0.197 4.197 18 N -0.560 5.560 19 Si 0.740 3.260 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.215 1.215 23 C 0.008 3.992 24 H 0.150 0.850 25 N -0.063 5.063 26 C -0.200 4.200 27 C -0.212 4.212 28 N -0.137 5.137 29 N -0.045 5.045 30 C -0.018 4.018 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.229 0.771 44 H 0.070 0.930 45 H 0.194 0.806 46 H 0.200 0.800 47 H 0.112 0.888 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.894 -15.887 -0.811 17.337 hybrid contribution -1.652 0.440 0.249 1.728 sum -8.546 -15.447 -0.562 17.662 Atomic orbital electron populations 1.22737 0.81064 1.02700 1.00009 1.87876 1.19640 1.28135 1.95432 1.22627 0.94052 0.84589 1.00434 1.21265 0.92225 0.95313 1.04785 1.21128 0.91680 0.98313 1.01189 0.88172 1.22035 1.02582 1.01477 0.95414 1.20230 0.88836 0.82621 0.75755 1.90706 1.74887 1.26164 1.50328 1.48508 1.06603 1.07141 1.72766 1.23798 1.00919 0.79174 1.02340 1.21688 0.88426 0.86479 0.98293 0.88902 1.42347 1.58157 1.01630 1.32297 1.19212 1.23793 0.88991 1.07742 0.90604 1.24858 0.99792 0.97526 0.97543 1.69704 1.43984 1.19193 1.23070 0.86102 0.79289 0.81813 0.78756 1.20341 1.21623 1.21527 1.23208 1.01665 0.94236 0.80129 0.84991 1.47225 1.24406 1.27238 1.07448 1.23389 1.04917 1.06271 0.85469 1.23457 0.98171 0.98692 1.00855 1.75104 1.20640 1.19569 0.98430 1.78386 1.08097 1.07487 1.10543 1.22150 0.81886 0.93962 1.03820 0.94061 0.94073 0.89685 0.92848 0.93206 0.90242 0.90402 0.90631 0.91321 0.91975 0.89915 0.90602 0.77112 0.93020 0.80551 0.80003 0.88849 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.14 10.70 -35.23 -0.38 -4.52 16 3 C 0.06 0.54 5.69 37.16 0.21 0.75 16 4 C -0.10 -1.02 4.40 -26.73 -0.12 -1.14 16 5 C -0.10 -1.03 2.07 -91.77 -0.19 -1.22 16 6 H 0.10 0.91 7.85 -51.93 -0.41 0.50 16 7 C -0.16 -1.46 8.76 37.16 0.33 -1.13 16 8 C 0.54 6.89 7.21 -10.99 -0.08 6.81 16 9 O -0.54 -8.66 16.25 5.55 0.09 -8.57 16 10 N -0.62 -7.55 3.32 -170.52 -0.57 -8.12 16 11 C 0.06 0.87 4.32 -2.53 -0.01 0.85 16 12 C 0.17 2.71 3.58 -65.78 -0.24 2.47 16 13 H 0.09 1.44 8.09 -51.93 -0.42 1.02 16 14 N -0.70 -15.77 5.21 -51.35 -0.27 -16.03 16 15 C -0.27 -6.70 9.96 -15.06 -0.15 -6.85 16 16 H 0.08 1.80 7.83 -52.49 -0.41 1.39 16 17 C 0.00 0.04 5.50 -17.43 -0.10 -0.06 16 18 N -0.91 -26.66 13.06 55.49 0.72 -25.93 16 19 Si 0.91 21.02 29.55 -169.99 -5.02 15.99 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.11 1.59 3.97 -66.10 -0.26 1.33 16 24 H 0.13 1.73 8.14 -51.93 -0.42 1.31 16 25 N -0.27 -4.48 2.24 -52.99 -0.12 -4.59 16 26 C -0.05 -0.75 9.23 -17.05 -0.16 -0.91 16 27 C -0.05 -0.88 12.05 -17.73 -0.21 -1.09 16 28 N -0.27 -5.42 12.41 30.24 0.38 -5.04 16 29 N -0.07 -1.32 12.58 60.35 0.76 -0.56 16 30 C 0.11 1.27 5.95 -3.06 -0.02 1.25 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.43 6.56 -51.93 -0.34 0.09 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.93 7.96 -51.93 -0.41 0.51 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.77 4.99 -51.93 -0.26 0.51 16 39 H 0.07 0.54 6.56 -51.93 -0.34 0.20 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 1.07 7.36 -51.93 -0.38 0.68 16 42 H 0.08 1.12 6.11 -51.92 -0.32 0.80 16 43 H 0.39 9.82 6.22 -40.82 -0.25 9.57 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.18 2.20 7.60 -52.48 -0.40 1.80 16 46 H 0.18 2.25 8.06 -52.49 -0.42 1.83 16 47 H 0.09 1.00 8.14 -51.94 -0.42 0.58 16 48 H 0.08 0.96 7.40 -51.93 -0.38 0.57 16 LS Contribution 386.38 15.07 5.82 5.82 Total: -1.00 -33.17 386.38 -5.73 -38.90 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -7.27 Total: 10.25 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 0.12 Total: 2.40 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: 0.91 Total: -60.28 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -0.29 Total: -13.09 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.17 -5.73 -38.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130129391.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.566 kcal (2) G-P(sol) polarization free energy of solvation -33.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds