Wall clock time and date at job start Tue Mar 31 2020 19:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42906 * 113.99755 * 2 1 4 4 C 1.52996 * 109.47235 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47466 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.46755 * 305.00102 * 5 4 3 7 7 C 1.53004 * 109.47089 * 64.99456 * 5 4 3 8 8 C 1.50692 * 109.47456 * 184.99716 * 5 4 3 9 9 O 1.21287 * 119.99985 * 359.97438 * 8 5 4 10 10 N 1.34780 * 120.00224 * 180.02562 * 8 5 4 11 11 C 1.47419 * 125.64726 * 359.95103 * 10 8 5 12 12 C 1.54906 * 104.83392 * 204.16683 * 11 10 8 13 13 H 1.08999 * 111.00225 * 81.07063 * 12 11 10 14 14 N 1.46508 * 111.00483 * 204.91766 * 12 11 10 15 15 C 1.36932 * 119.99623 * 267.19624 * 14 12 11 16 16 H 1.07999 * 120.00685 * 0.02562 * 15 14 12 17 17 C 1.38821 * 119.99491 * 180.02562 * 15 14 12 18 18 N 1.31619 * 120.00103 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99825 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47229 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47120 * 120.00334 * 19 17 15 22 22 H 1.48497 * 109.46966 * 239.99867 * 19 17 15 23 23 C 1.55149 * 101.58282 * 322.99466 * 12 11 10 24 24 H 1.09000 * 110.87451 * 153.93915 * 23 12 11 25 25 N 1.46499 * 110.71945 * 277.13708 * 23 12 11 26 26 C 1.35311 * 125.87102 * 80.27072 * 25 23 12 27 27 C 1.35349 * 106.18014 * 180.18691 * 26 25 23 28 28 N 1.33776 * 106.49589 * 359.58896 * 27 26 25 29 29 N 1.28634 * 108.88224 * 0.26432 * 28 27 26 30 30 C 1.47021 * 125.64670 * 180.02562 * 10 8 5 31 31 H 1.09001 * 109.47618 * 300.00060 * 1 2 3 32 32 H 1.09000 * 109.47420 * 59.99960 * 1 2 3 33 33 H 1.09005 * 109.47058 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47035 * 59.99847 * 3 2 1 35 35 H 1.09003 * 109.47263 * 300.00450 * 3 2 1 36 36 H 1.09000 * 109.47687 * 59.99692 * 4 3 2 37 37 H 1.09003 * 109.46910 * 300.00112 * 4 3 2 38 38 H 1.08998 * 109.47109 * 180.02562 * 7 5 4 39 39 H 1.09002 * 109.47427 * 300.00393 * 7 5 4 40 40 H 1.09006 * 109.46951 * 60.00007 * 7 5 4 41 41 H 1.09002 * 110.37027 * 323.01203 * 11 10 8 42 42 H 1.09007 * 110.36440 * 85.21768 * 11 10 8 43 43 H 0.96996 * 119.99504 * 87.20090 * 14 12 11 44 44 H 0.96997 * 120.00309 * 180.02562 * 18 17 15 45 45 H 1.08005 * 126.91425 * 0.04514 * 26 25 23 46 46 H 1.08002 * 126.75754 * 179.85677 * 27 26 25 47 47 H 1.08989 * 109.88522 * 59.48430 * 30 10 8 48 48 H 1.09005 * 109.88138 * 298.31176 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 6 4.1576 2.5825 0.0000 6 1 3.7665 3.1547 -0.8413 7 6 3.8085 3.2956 1.3079 8 6 5.6549 2.4659 -0.1244 9 8 6.1733 1.3724 -0.2051 10 7 6.4180 3.5767 -0.1449 11 6 5.9215 4.9619 -0.0554 12 6 7.0213 5.8215 -0.7271 13 1 6.9246 5.8010 -1.8126 14 7 6.9918 7.1977 -0.2254 15 6 6.2646 8.1517 -0.8858 16 1 5.7125 7.8896 -1.7762 17 6 6.2371 9.4558 -0.4107 18 7 6.9103 9.7753 0.6743 19 14 5.2445 10.7571 -1.3111 20 1 4.5836 10.1462 -2.4923 21 1 4.2125 11.3118 -0.3988 22 1 6.1480 11.8477 -1.7577 23 6 8.3110 5.0903 -0.2697 24 1 9.1223 5.2537 -0.9790 25 7 8.7040 5.5240 1.0733 26 6 8.1709 5.0836 2.2364 27 6 8.8201 5.7447 3.2230 28 7 9.7134 6.5399 2.6236 29 7 9.6193 6.3857 1.3499 30 6 7.8832 3.6076 -0.2619 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6884 1.8464 0.8900 35 1 1.6884 1.8465 -0.8900 36 1 3.8567 0.6441 -0.8908 37 1 3.8573 0.6437 0.8891 38 1 4.2514 4.2916 1.3082 39 1 2.7255 3.3800 1.3979 40 1 4.1995 2.7234 2.1493 41 1 4.9793 5.0628 -0.5939 42 1 5.7945 5.2527 0.9875 43 1 7.4874 7.4329 0.5745 44 1 6.8908 10.6863 1.0065 45 1 7.3838 4.3534 2.3538 46 1 8.6532 5.6461 4.2855 47 1 8.1911 3.1278 -1.1908 48 1 8.3338 3.0964 0.5890 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130129391.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:50 Heat of formation + Delta-G solvation = 20.836281 kcal Electronic energy + Delta-G solvation = -30477.904789 eV Core-core repulsion = 26377.335856 eV Total energy + Delta-G solvation = -4100.568933 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.21734 -41.44207 -39.38485 -38.73770 -35.99090 -35.95469 -34.85052 -33.05671 -31.91407 -31.17590 -29.83456 -29.13131 -27.21492 -26.50254 -25.64203 -24.82856 -23.60695 -23.15822 -22.14098 -21.45423 -20.18061 -19.49327 -18.69977 -18.29317 -17.45994 -17.20448 -16.99607 -16.79827 -16.40647 -16.26680 -15.96650 -15.65798 -15.47395 -15.29618 -15.07810 -14.74134 -14.53033 -14.41165 -13.99639 -13.83266 -13.54989 -13.45444 -12.99643 -12.93866 -12.78892 -12.70033 -12.56723 -12.54556 -12.46188 -12.09208 -12.03210 -11.89891 -11.88261 -11.83012 -11.79496 -11.22313 -10.90401 -10.83673 -10.54998 -10.23923 -9.81119 -9.14635 -7.96540 -5.30740 0.73676 1.40340 1.48558 1.50302 1.55420 1.59322 1.73372 1.78909 2.52312 2.82793 3.01275 3.24148 3.47853 3.54689 3.65170 3.72482 3.88842 3.99150 4.00813 4.11584 4.18991 4.23222 4.25214 4.32176 4.36421 4.39676 4.49843 4.52980 4.56262 4.57797 4.59969 4.76864 4.84282 4.87503 4.88843 4.91759 4.99357 5.03787 5.09278 5.26706 5.31810 5.34697 5.50933 5.73613 6.19576 6.26174 6.36864 7.05083 7.28853 7.63487 7.96208 8.18072 9.24991 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009762 B = 0.003575 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.527154 B = 7829.295967 C = 9767.160003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.061 3.939 4 C -0.092 4.092 5 C -0.096 4.096 6 H 0.118 0.882 7 C -0.154 4.154 8 C 0.538 3.462 9 O -0.574 6.574 10 N -0.608 5.608 11 C 0.082 3.918 12 C 0.157 3.843 13 H 0.106 0.894 14 N -0.723 5.723 15 C -0.247 4.247 16 H 0.092 0.908 17 C -0.068 4.068 18 N -0.963 5.963 19 Si 0.971 3.029 20 H -0.257 1.257 21 H -0.296 1.296 22 H -0.302 1.302 23 C 0.113 3.887 24 H 0.141 0.859 25 N -0.266 5.266 26 C -0.039 4.039 27 C -0.062 4.062 28 N -0.310 5.310 29 N -0.109 5.109 30 C 0.114 3.886 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.068 0.932 43 H 0.378 0.622 44 H 0.249 0.751 45 H 0.205 0.795 46 H 0.215 0.785 47 H 0.113 0.887 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.364 -17.802 -0.964 20.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.340 6.340 3 C -0.016 4.016 4 C -0.130 4.130 5 C -0.117 4.117 6 H 0.136 0.864 7 C -0.211 4.211 8 C 0.328 3.672 9 O -0.454 6.454 10 N -0.342 5.342 11 C -0.043 4.043 12 C 0.044 3.956 13 H 0.124 0.876 14 N -0.362 5.362 15 C -0.378 4.378 16 H 0.110 0.890 17 C -0.261 4.261 18 N -0.612 5.612 19 Si 0.801 3.199 20 H -0.180 1.180 21 H -0.224 1.224 22 H -0.230 1.230 23 C 0.009 3.991 24 H 0.158 0.842 25 N -0.060 5.060 26 C -0.190 4.190 27 C -0.220 4.220 28 N -0.175 5.175 29 N -0.088 5.088 30 C -0.010 4.010 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.116 0.884 42 H 0.086 0.914 43 H 0.212 0.788 44 H 0.058 0.942 45 H 0.222 0.778 46 H 0.231 0.769 47 H 0.131 0.869 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.051 -17.533 -1.738 19.808 hybrid contribution -1.000 0.751 0.495 1.345 sum -10.051 -16.782 -1.243 19.601 Atomic orbital electron populations 1.22918 0.79468 1.03720 1.00956 1.87834 1.21495 1.29039 1.95650 1.22647 0.92834 0.84425 1.01651 1.21171 0.93492 0.95072 1.03265 1.21143 0.89584 0.98509 1.02426 0.86428 1.22016 1.03798 1.00629 0.94665 1.20686 0.89828 0.81909 0.74732 1.90705 1.75657 1.27232 1.51775 1.48426 1.06634 1.06562 1.72597 1.23390 1.00154 0.79081 1.01699 1.21970 0.90210 0.84291 0.99103 0.87638 1.42475 1.58052 1.03751 1.31916 1.19688 1.21778 0.89240 1.07123 0.89004 1.25614 1.01863 0.99898 0.98707 1.69880 1.47083 1.18762 1.25511 0.85118 0.77544 0.79135 0.78136 1.18038 1.22378 1.23002 1.23321 1.01072 0.95168 0.79515 0.84151 1.47395 1.23686 1.26352 1.08519 1.23832 1.04633 1.05876 0.84698 1.24106 0.97329 0.97838 1.02697 1.75037 1.22464 1.21083 0.98875 1.78317 1.10170 1.09426 1.10910 1.22154 0.81711 0.92145 1.05006 0.93044 0.93135 0.88795 0.91504 0.91982 0.91900 0.91827 0.91385 0.89461 0.92179 0.88428 0.91375 0.78841 0.94212 0.77824 0.76868 0.86898 0.90048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.42 -8.13 10.70 -148.98 -1.59 -9.73 16 3 C 0.06 0.95 5.69 71.98 0.41 1.36 16 4 C -0.09 -1.74 4.40 30.59 0.13 -1.61 16 5 C -0.10 -1.67 2.07 -11.54 -0.02 -1.69 16 6 H 0.12 1.69 7.85 -2.39 -0.02 1.67 16 7 C -0.15 -2.37 8.76 71.98 0.63 -1.74 16 8 C 0.54 12.44 7.21 87.65 0.63 13.07 16 9 O -0.57 -17.23 16.25 -3.05 -0.05 -17.28 16 10 N -0.61 -13.18 3.32 -811.80 -2.70 -15.88 16 11 C 0.08 2.01 4.32 86.85 0.38 2.38 16 12 C 0.16 4.78 3.58 46.38 0.17 4.94 16 13 H 0.11 2.98 8.09 -2.39 -0.02 2.96 16 14 N -0.72 -31.77 5.21 -316.38 -1.65 -33.42 16 15 C -0.25 -12.12 9.96 84.04 0.84 -11.28 16 16 H 0.09 4.12 7.83 -2.91 -0.02 4.09 16 17 C -0.07 -3.63 5.50 84.86 0.47 -3.17 16 18 N -0.96 -57.64 13.06 21.65 0.28 -57.36 16 19 Si 0.97 43.35 29.55 68.60 2.03 45.37 16 20 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 21 H -0.30 -13.39 7.11 99.48 0.71 -12.69 16 22 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 23 C 0.11 3.01 3.97 46.18 0.18 3.19 16 24 H 0.14 3.50 8.14 -2.39 -0.02 3.48 16 25 N -0.27 -8.63 2.24 -321.55 -0.72 -9.35 16 26 C -0.04 -1.12 9.23 83.49 0.77 -0.35 16 27 C -0.06 -1.96 12.05 83.73 1.01 -0.95 16 28 N -0.31 -12.55 12.41 -58.25 -0.72 -13.28 16 29 N -0.11 -4.47 12.58 37.02 0.47 -4.00 16 30 C 0.11 2.43 5.95 86.73 0.52 2.95 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.07 0.86 6.56 -2.39 -0.02 0.84 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.06 1.40 7.96 -2.39 -0.02 1.38 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.07 1.18 4.99 -2.39 -0.01 1.16 16 39 H 0.09 1.04 6.56 -2.39 -0.02 1.03 16 40 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.10 2.15 7.36 -2.39 -0.02 2.13 16 42 H 0.07 1.84 6.11 -2.38 -0.01 1.83 16 43 H 0.38 19.02 6.22 -92.71 -0.58 18.44 16 44 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 45 H 0.20 4.54 7.60 -2.91 -0.02 4.52 16 46 H 0.21 4.95 8.06 -2.91 -0.02 4.92 16 47 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.08 1.77 7.40 -2.38 -0.02 1.75 16 Total: -1.00 -73.80 386.38 3.10 -70.70 By element: Atomic # 1 Polarization: 35.15 SS G_CDS: 0.40 Total: 35.55 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: 7.36 Total: 8.67 kcal Atomic # 7 Polarization: -128.24 SS G_CDS: -5.04 Total: -133.28 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -1.64 Total: -27.01 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -73.80 3.10 -70.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130129391.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.534 kcal (2) G-P(sol) polarization free energy of solvation -73.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds