Wall clock time and date at job start Tue Mar 31 2020 19:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99772 * 2 1 4 4 C 1.52996 * 109.46795 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47097 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47119 * 55.00057 * 5 4 3 7 7 C 1.53000 * 109.47200 * 295.00086 * 5 4 3 8 8 C 1.50697 * 109.47178 * 175.00005 * 5 4 3 9 9 O 1.21283 * 119.99987 * 34.91281 * 8 5 4 10 10 N 1.34779 * 120.00304 * 214.90871 * 8 5 4 11 11 C 1.47430 * 125.64500 * 354.93757 * 10 8 5 12 12 C 1.55383 * 104.87372 * 204.09469 * 11 10 8 13 13 H 1.08996 * 111.02633 * 80.98347 * 12 11 10 14 14 N 1.46499 * 111.19011 * 204.98085 * 12 11 10 15 15 C 1.36938 * 120.00051 * 267.04069 * 14 12 11 16 16 H 1.07999 * 120.00141 * 359.97438 * 15 14 12 17 17 C 1.38813 * 120.00084 * 179.97438 * 15 14 12 18 18 N 1.31625 * 119.99992 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00131 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47029 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47101 * 119.99968 * 19 17 15 22 22 H 1.48494 * 109.47196 * 240.00259 * 19 17 15 23 23 C 1.55162 * 101.36602 * 323.01750 * 12 11 10 24 24 H 1.09003 * 110.72044 * 153.94798 * 23 12 11 25 25 N 1.46501 * 110.71943 * 277.04331 * 23 12 11 26 26 C 1.35311 * 125.86822 * 82.85643 * 25 23 12 27 27 C 1.35351 * 106.17512 * 180.18545 * 26 25 23 28 28 N 1.33771 * 106.49517 * 359.59119 * 27 26 25 29 29 N 1.28632 * 108.88852 * 0.25998 * 28 27 26 30 30 C 1.47018 * 125.65368 * 174.89493 * 10 8 5 31 31 H 1.08995 * 109.47179 * 300.00212 * 1 2 3 32 32 H 1.09010 * 109.46970 * 60.00110 * 1 2 3 33 33 H 1.08997 * 109.46981 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47198 * 59.99720 * 3 2 1 35 35 H 1.08993 * 109.47228 * 299.99877 * 3 2 1 36 36 H 1.08999 * 109.47271 * 60.00016 * 4 3 2 37 37 H 1.08998 * 109.47551 * 299.99626 * 4 3 2 38 38 H 1.09006 * 109.46899 * 305.15798 * 7 5 4 39 39 H 1.08995 * 109.46938 * 65.15361 * 7 5 4 40 40 H 1.08996 * 109.47369 * 185.15619 * 7 5 4 41 41 H 1.08997 * 110.36621 * 322.93000 * 11 10 8 42 42 H 1.08996 * 110.36504 * 85.14184 * 11 10 8 43 43 H 0.97004 * 119.99982 * 87.03767 * 14 12 11 44 44 H 0.96997 * 120.00016 * 179.97438 * 18 17 15 45 45 H 1.07996 * 126.91364 * 0.03329 * 26 25 23 46 46 H 1.08001 * 126.75561 * 179.84692 * 27 26 25 47 47 H 1.09000 * 109.88316 * 59.55485 * 30 10 8 48 48 H 1.09009 * 110.00978 * 298.46966 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5824 0.0013 6 1 3.7667 3.1538 0.8431 7 6 3.8088 3.2966 -1.3060 8 6 5.6550 2.4656 0.1258 9 8 6.2366 1.5392 -0.3982 10 7 6.3478 3.3905 0.8193 11 6 5.7863 4.6171 1.4140 12 6 6.9902 5.5930 1.5265 13 1 7.1880 6.0816 0.5725 14 7 6.7730 6.5819 2.5854 15 6 6.2114 7.7942 2.2853 16 1 5.9289 8.0215 1.2680 17 6 6.0051 8.7310 3.2887 18 7 6.3499 8.4543 4.5285 19 14 5.2397 10.3851 2.8793 20 1 4.9463 10.4483 1.4249 21 1 3.9791 10.5507 3.6467 22 1 6.1855 11.4713 3.2406 23 6 8.1389 4.6197 1.9017 24 1 9.1020 5.0190 1.5837 25 7 8.1412 4.3512 3.3419 26 6 7.3688 3.4418 3.9800 27 6 7.6896 3.5290 5.2921 28 7 8.6366 4.4687 5.3899 29 7 8.8818 4.9364 4.2170 30 6 7.7884 3.3430 1.1088 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6885 1.8464 0.8899 35 1 1.6886 1.8464 -0.8899 36 1 3.8574 0.6436 -0.8891 37 1 3.8567 0.6440 0.8908 38 1 4.1188 2.6808 -2.1504 39 1 2.7326 3.4627 -1.3532 40 1 4.3265 4.2550 -1.3458 41 1 5.0181 5.0363 0.7644 42 1 5.3740 4.4058 2.4006 43 1 7.0271 6.3779 3.4991 44 1 6.2061 9.1090 5.2296 45 1 6.6408 2.7812 3.5328 46 1 7.2674 2.9505 6.1005 47 1 8.3532 3.3186 0.1768 48 1 8.0201 2.4607 1.7056 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130129392.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:53 Heat of formation + Delta-G solvation = 41.971424 kcal Electronic energy + Delta-G solvation = -30413.168929 eV Core-core repulsion = 26313.516485 eV Total energy + Delta-G solvation = -4099.652444 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.89909 -40.31848 -38.42375 -37.81239 -35.02059 -34.36275 -33.55846 -31.33650 -30.62230 -29.97131 -29.05520 -27.79881 -26.62763 -25.44927 -24.15890 -23.64643 -22.25497 -21.95405 -21.22740 -20.12973 -19.03502 -17.83478 -17.61027 -17.19713 -16.65418 -16.29847 -15.75625 -15.60114 -15.35873 -14.92021 -14.78920 -14.69416 -14.36679 -13.98417 -13.81247 -13.44873 -13.28751 -13.21193 -13.10104 -12.94181 -12.37904 -12.28430 -12.11439 -11.94040 -11.68498 -11.51583 -11.29578 -11.21021 -11.15597 -11.07168 -11.03840 -10.96249 -10.48545 -10.23497 -10.02680 -9.96169 -9.79829 -9.63907 -9.18902 -8.92786 -8.70481 -7.30577 -5.96401 -3.32876 2.03187 2.52345 2.60451 2.83453 3.06668 3.30833 3.35803 3.39584 3.52027 4.07597 4.38748 4.41536 4.59164 4.63614 4.76505 4.83516 4.90603 4.92774 4.97932 5.08647 5.11173 5.14604 5.18284 5.22461 5.27876 5.36862 5.37650 5.44076 5.50141 5.55696 5.57772 5.62558 5.65516 5.73782 5.81255 5.91466 5.98261 6.02415 6.11865 6.18023 6.30367 6.54563 6.87443 6.99101 7.41598 7.48490 8.07226 8.16170 8.99395 9.29214 9.76457 10.10701 11.23264 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009320 B = 0.003588 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3003.632475 B = 7800.964863 C = 9314.146425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.060 3.940 4 C -0.100 4.100 5 C -0.103 4.103 6 H 0.095 0.905 7 C -0.143 4.143 8 C 0.538 3.462 9 O -0.543 6.543 10 N -0.616 5.616 11 C 0.063 3.937 12 C 0.169 3.831 13 H 0.093 0.907 14 N -0.704 5.704 15 C -0.267 4.267 16 H 0.076 0.924 17 C 0.001 3.999 18 N -0.914 5.914 19 Si 0.911 3.089 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.288 1.288 23 C 0.112 3.888 24 H 0.132 0.868 25 N -0.270 5.270 26 C -0.051 4.051 27 C -0.055 4.055 28 N -0.272 5.272 29 N -0.064 5.064 30 C 0.106 3.894 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.393 0.607 44 H 0.260 0.740 45 H 0.177 0.823 46 H 0.183 0.817 47 H 0.093 0.907 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.235 -14.041 -9.435 18.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.016 4.016 4 C -0.138 4.138 5 C -0.125 4.125 6 H 0.113 0.887 7 C -0.201 4.201 8 C 0.327 3.673 9 O -0.420 6.420 10 N -0.351 5.351 11 C -0.063 4.063 12 C 0.053 3.947 13 H 0.111 0.889 14 N -0.344 5.344 15 C -0.398 4.398 16 H 0.094 0.906 17 C -0.197 4.197 18 N -0.559 5.559 19 Si 0.741 3.259 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.215 1.215 23 C 0.007 3.993 24 H 0.150 0.850 25 N -0.064 5.064 26 C -0.202 4.202 27 C -0.212 4.212 28 N -0.137 5.137 29 N -0.043 5.043 30 C -0.018 4.018 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.230 0.770 44 H 0.070 0.930 45 H 0.195 0.805 46 H 0.200 0.800 47 H 0.112 0.888 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.817 -13.474 -9.537 17.503 hybrid contribution -1.637 0.372 0.018 1.678 sum -7.454 -13.102 -9.519 17.828 Atomic orbital electron populations 1.22741 0.81002 1.02723 1.00037 1.87873 1.19697 1.28092 1.95444 1.22596 0.93848 0.84645 1.00525 1.21310 0.92630 0.95268 1.04613 1.21166 0.91698 0.98311 1.01315 0.88701 1.21788 1.02230 1.00623 0.95452 1.20216 0.89194 0.80710 0.77195 1.90696 1.71289 1.33193 1.46839 1.48549 1.08737 1.23558 1.54245 1.23806 1.00255 0.83799 0.98488 1.21734 0.89097 0.88561 0.95289 0.88886 1.42358 1.72908 1.13002 1.06097 1.19213 1.34918 0.91335 0.94308 0.90604 1.24861 1.00771 0.98760 0.95334 1.69711 1.50999 1.35398 0.99778 0.86100 0.78568 0.83745 0.77532 1.20336 1.21624 1.21523 1.23212 1.04569 0.97208 0.74280 0.85043 1.47241 1.25782 1.24346 1.08992 1.23389 1.02732 1.00095 0.93974 1.23460 1.00388 1.01465 0.95870 1.75107 1.15064 1.09628 1.13946 1.78399 1.15519 1.17616 0.92807 1.22139 0.83091 0.96483 1.00121 0.93992 0.94086 0.89668 0.93080 0.92837 0.89851 0.90822 0.91613 0.91288 0.91668 0.89956 0.90939 0.77049 0.93023 0.80548 0.79996 0.88849 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.14 10.70 -35.23 -0.38 -4.51 16 3 C 0.06 0.55 5.69 37.16 0.21 0.76 16 4 C -0.10 -1.04 4.63 -26.73 -0.12 -1.16 16 5 C -0.10 -1.06 2.15 -91.77 -0.20 -1.26 16 6 H 0.09 0.91 7.14 -51.93 -0.37 0.54 16 7 C -0.14 -1.29 8.80 37.16 0.33 -0.96 16 8 C 0.54 6.96 6.84 -10.99 -0.08 6.88 16 9 O -0.54 -8.65 16.71 5.56 0.09 -8.56 16 10 N -0.62 -7.69 3.33 -170.22 -0.57 -8.25 16 11 C 0.06 0.87 5.44 -2.27 -0.01 0.86 16 12 C 0.17 2.78 3.60 -65.52 -0.24 2.54 16 13 H 0.09 1.46 8.09 -51.93 -0.42 1.04 16 14 N -0.70 -15.92 5.22 -51.10 -0.27 -16.19 16 15 C -0.27 -6.76 9.96 -15.06 -0.15 -6.91 16 16 H 0.08 1.81 7.83 -52.49 -0.41 1.40 16 17 C 0.00 0.04 5.50 -17.43 -0.10 -0.06 16 18 N -0.91 -26.78 13.06 55.49 0.72 -26.05 16 19 Si 0.91 21.10 29.55 -169.99 -5.02 16.08 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 C 0.11 1.60 3.96 -66.10 -0.26 1.34 16 24 H 0.13 1.74 8.14 -51.93 -0.42 1.31 16 25 N -0.27 -4.52 2.31 -52.98 -0.12 -4.64 16 26 C -0.05 -0.77 9.26 -17.05 -0.16 -0.93 16 27 C -0.05 -0.89 12.05 -17.74 -0.21 -1.10 16 28 N -0.27 -5.46 12.41 30.23 0.38 -5.09 16 29 N -0.06 -1.30 12.43 60.35 0.75 -0.55 16 30 C 0.11 1.28 5.92 -3.07 -0.02 1.26 16 31 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.04 0.25 8.14 -51.92 -0.42 -0.17 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.05 0.42 6.68 -51.93 -0.35 0.07 16 36 H 0.08 0.95 8.02 -51.93 -0.42 0.54 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.50 6.82 -51.93 -0.35 0.15 16 40 H 0.06 0.60 7.97 -51.93 -0.41 0.19 16 41 H 0.08 1.08 7.50 -51.93 -0.39 0.69 16 42 H 0.07 1.11 7.40 -51.93 -0.38 0.72 16 43 H 0.39 9.92 6.11 -40.82 -0.25 9.67 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.18 2.21 7.70 -52.49 -0.40 1.81 16 46 H 0.18 2.26 8.06 -52.49 -0.42 1.84 16 47 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.08 0.95 7.29 -51.92 -0.38 0.57 16 LS Contribution 391.91 15.07 5.91 5.91 Total: -1.00 -33.38 391.91 -5.88 -39.26 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -7.48 Total: 10.00 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 0.11 Total: 2.61 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: 0.89 Total: -60.78 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.28 Total: -13.07 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.38 -5.88 -39.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130129392.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.229 kcal (2) G-P(sol) polarization free energy of solvation -33.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds