Wall clock time and date at job start Tue Mar 31 2020 19:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99772 * 2 1 4 4 C 1.52996 * 109.46795 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47097 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47119 * 55.00057 * 5 4 3 7 7 C 1.53000 * 109.47200 * 295.00086 * 5 4 3 8 8 C 1.50697 * 109.47178 * 175.00005 * 5 4 3 9 9 O 1.21283 * 119.99987 * 34.91281 * 8 5 4 10 10 N 1.34779 * 120.00304 * 214.90871 * 8 5 4 11 11 C 1.47430 * 125.64500 * 354.93757 * 10 8 5 12 12 C 1.55383 * 104.87372 * 204.09469 * 11 10 8 13 13 H 1.08996 * 111.02633 * 80.98347 * 12 11 10 14 14 N 1.46499 * 111.19011 * 204.98085 * 12 11 10 15 15 C 1.36938 * 120.00051 * 267.04069 * 14 12 11 16 16 H 1.07999 * 120.00141 * 359.97438 * 15 14 12 17 17 C 1.38813 * 120.00084 * 179.97438 * 15 14 12 18 18 N 1.31625 * 119.99992 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00131 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47029 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47101 * 119.99968 * 19 17 15 22 22 H 1.48494 * 109.47196 * 240.00259 * 19 17 15 23 23 C 1.55162 * 101.36602 * 323.01750 * 12 11 10 24 24 H 1.09003 * 110.72044 * 153.94798 * 23 12 11 25 25 N 1.46501 * 110.71943 * 277.04331 * 23 12 11 26 26 C 1.35311 * 125.86822 * 82.85643 * 25 23 12 27 27 C 1.35351 * 106.17512 * 180.18545 * 26 25 23 28 28 N 1.33771 * 106.49517 * 359.59119 * 27 26 25 29 29 N 1.28632 * 108.88852 * 0.25998 * 28 27 26 30 30 C 1.47018 * 125.65368 * 174.89493 * 10 8 5 31 31 H 1.08995 * 109.47179 * 300.00212 * 1 2 3 32 32 H 1.09010 * 109.46970 * 60.00110 * 1 2 3 33 33 H 1.08997 * 109.46981 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47198 * 59.99720 * 3 2 1 35 35 H 1.08993 * 109.47228 * 299.99877 * 3 2 1 36 36 H 1.08999 * 109.47271 * 60.00016 * 4 3 2 37 37 H 1.08998 * 109.47551 * 299.99626 * 4 3 2 38 38 H 1.09006 * 109.46899 * 305.15798 * 7 5 4 39 39 H 1.08995 * 109.46938 * 65.15361 * 7 5 4 40 40 H 1.08996 * 109.47369 * 185.15619 * 7 5 4 41 41 H 1.08997 * 110.36621 * 322.93000 * 11 10 8 42 42 H 1.08996 * 110.36504 * 85.14184 * 11 10 8 43 43 H 0.97004 * 119.99982 * 87.03767 * 14 12 11 44 44 H 0.96997 * 120.00016 * 179.97438 * 18 17 15 45 45 H 1.07996 * 126.91364 * 0.03329 * 26 25 23 46 46 H 1.08001 * 126.75561 * 179.84692 * 27 26 25 47 47 H 1.09000 * 109.88316 * 59.55485 * 30 10 8 48 48 H 1.09009 * 110.00978 * 298.46966 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5824 0.0013 6 1 3.7667 3.1538 0.8431 7 6 3.8088 3.2966 -1.3060 8 6 5.6550 2.4656 0.1258 9 8 6.2366 1.5392 -0.3982 10 7 6.3478 3.3905 0.8193 11 6 5.7863 4.6171 1.4140 12 6 6.9902 5.5930 1.5265 13 1 7.1880 6.0816 0.5725 14 7 6.7730 6.5819 2.5854 15 6 6.2114 7.7942 2.2853 16 1 5.9289 8.0215 1.2680 17 6 6.0051 8.7310 3.2887 18 7 6.3499 8.4543 4.5285 19 14 5.2397 10.3851 2.8793 20 1 4.9463 10.4483 1.4249 21 1 3.9791 10.5507 3.6467 22 1 6.1855 11.4713 3.2406 23 6 8.1389 4.6197 1.9017 24 1 9.1020 5.0190 1.5837 25 7 8.1412 4.3512 3.3419 26 6 7.3688 3.4418 3.9800 27 6 7.6896 3.5290 5.2921 28 7 8.6366 4.4687 5.3899 29 7 8.8818 4.9364 4.2170 30 6 7.7884 3.3430 1.1088 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6885 1.8464 0.8899 35 1 1.6886 1.8464 -0.8899 36 1 3.8574 0.6436 -0.8891 37 1 3.8567 0.6440 0.8908 38 1 4.1188 2.6808 -2.1504 39 1 2.7326 3.4627 -1.3532 40 1 4.3265 4.2550 -1.3458 41 1 5.0181 5.0363 0.7644 42 1 5.3740 4.4058 2.4006 43 1 7.0271 6.3779 3.4991 44 1 6.2061 9.1090 5.2296 45 1 6.6408 2.7812 3.5328 46 1 7.2674 2.9505 6.1005 47 1 8.3532 3.3186 0.1768 48 1 8.0201 2.4607 1.7056 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130129392.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:52 Heat of formation + Delta-G solvation = 18.142975 kcal Electronic energy + Delta-G solvation = -30414.202208 eV Core-core repulsion = 26313.516485 eV Total energy + Delta-G solvation = -4100.685723 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.22166 -41.39693 -39.39889 -38.74606 -36.00727 -35.86896 -34.86889 -33.05913 -31.92063 -31.06246 -29.97008 -29.17775 -27.24034 -26.45570 -25.70087 -24.79946 -23.61595 -23.15239 -22.25106 -21.39525 -20.04631 -19.49362 -18.77301 -18.38839 -17.45130 -17.17431 -16.97087 -16.75427 -16.48013 -16.23481 -15.95450 -15.67400 -15.47796 -15.31309 -15.03324 -14.77009 -14.60383 -14.27554 -14.08448 -13.89908 -13.65036 -13.22665 -13.06367 -12.93958 -12.81105 -12.73822 -12.61041 -12.55584 -12.45276 -12.21302 -12.04768 -11.91759 -11.88205 -11.85632 -11.79187 -11.23413 -10.90787 -10.84327 -10.55049 -10.24513 -9.82134 -9.15518 -7.96806 -5.31313 0.73274 1.39873 1.48197 1.49986 1.51428 1.59109 1.72881 1.78178 2.52023 2.82578 2.99644 3.23735 3.47833 3.53990 3.64935 3.71770 3.84454 3.99366 4.02393 4.12052 4.18382 4.21942 4.23054 4.31253 4.35553 4.40590 4.50152 4.52425 4.56122 4.57272 4.59593 4.73167 4.83226 4.87039 4.88709 4.90934 4.98552 5.00265 5.05599 5.24653 5.30130 5.31618 5.50379 5.73040 6.19258 6.25031 6.35496 7.03847 7.28454 7.63218 7.95906 8.17689 9.24642 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009320 B = 0.003588 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3003.632475 B = 7800.964863 C = 9314.146425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.061 3.939 4 C -0.095 4.095 5 C -0.098 4.098 6 H 0.106 0.894 7 C -0.141 4.141 8 C 0.540 3.460 9 O -0.572 6.572 10 N -0.610 5.610 11 C 0.081 3.919 12 C 0.159 3.841 13 H 0.106 0.894 14 N -0.723 5.723 15 C -0.248 4.248 16 H 0.092 0.908 17 C -0.068 4.068 18 N -0.963 5.963 19 Si 0.972 3.028 20 H -0.256 1.256 21 H -0.296 1.296 22 H -0.302 1.302 23 C 0.112 3.888 24 H 0.141 0.859 25 N -0.266 5.266 26 C -0.040 4.040 27 C -0.062 4.062 28 N -0.310 5.310 29 N -0.108 5.108 30 C 0.114 3.886 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.097 0.903 42 H 0.062 0.938 43 H 0.378 0.622 44 H 0.249 0.751 45 H 0.206 0.794 46 H 0.215 0.785 47 H 0.113 0.887 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.941 -14.900 -11.547 20.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.340 6.340 3 C -0.015 4.015 4 C -0.133 4.133 5 C -0.119 4.119 6 H 0.124 0.876 7 C -0.199 4.199 8 C 0.330 3.670 9 O -0.452 6.452 10 N -0.344 5.344 11 C -0.044 4.044 12 C 0.046 3.954 13 H 0.124 0.876 14 N -0.362 5.362 15 C -0.380 4.380 16 H 0.110 0.890 17 C -0.261 4.261 18 N -0.612 5.612 19 Si 0.801 3.199 20 H -0.180 1.180 21 H -0.224 1.224 22 H -0.229 1.229 23 C 0.009 3.991 24 H 0.158 0.842 25 N -0.060 5.060 26 C -0.192 4.192 27 C -0.219 4.219 28 N -0.175 5.175 29 N -0.087 5.087 30 C -0.010 4.010 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.112 0.888 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.083 0.917 41 H 0.115 0.885 42 H 0.081 0.919 43 H 0.212 0.788 44 H 0.058 0.942 45 H 0.222 0.778 46 H 0.232 0.768 47 H 0.131 0.869 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.519 -14.356 -11.726 20.003 hybrid contribution -1.105 0.483 0.577 1.337 sum -8.624 -13.874 -11.150 19.778 Atomic orbital electron populations 1.22921 0.79440 1.03742 1.00956 1.87831 1.21512 1.28958 1.95654 1.22614 0.92711 0.84483 1.01664 1.21229 0.93818 0.94971 1.03290 1.21189 0.89599 0.98581 1.02573 0.87586 1.21803 1.03620 1.00155 0.94297 1.20671 0.90167 0.79913 0.76241 1.90695 1.72108 1.34319 1.48029 1.48477 1.08800 1.23088 1.54010 1.23375 0.98956 0.83581 0.98532 1.22010 0.90732 0.88453 0.94167 0.87593 1.42492 1.73273 1.13672 1.06769 1.19693 1.31932 0.91795 0.94540 0.88995 1.25631 1.02818 1.02288 0.95377 1.69889 1.54259 1.36222 1.00818 0.85107 0.76924 0.79619 0.78217 1.17999 1.22377 1.22938 1.23324 1.04348 0.97899 0.73519 0.84161 1.47413 1.25256 1.23912 1.09428 1.23842 1.02188 0.99433 0.93700 1.24111 0.99543 1.00817 0.97478 1.75039 1.16875 1.11133 1.14457 1.78331 1.17554 1.19307 0.93530 1.22149 0.83118 0.95183 1.00593 0.93251 0.92932 0.88760 0.92172 0.91344 0.91321 0.92032 0.92124 0.89212 0.91686 0.88488 0.91924 0.78766 0.94204 0.77756 0.76833 0.86931 0.89863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.42 -8.12 10.70 -148.98 -1.59 -9.72 16 3 C 0.06 0.97 5.69 71.98 0.41 1.38 16 4 C -0.09 -1.79 4.63 30.59 0.14 -1.65 16 5 C -0.10 -1.75 2.15 -11.54 -0.02 -1.77 16 6 H 0.11 1.68 7.14 -2.39 -0.02 1.66 16 7 C -0.14 -2.09 8.80 71.98 0.63 -1.46 16 8 C 0.54 12.60 6.84 87.66 0.60 13.20 16 9 O -0.57 -17.13 16.71 -3.04 -0.05 -17.18 16 10 N -0.61 -13.47 3.33 -810.84 -2.70 -16.16 16 11 C 0.08 2.04 5.44 87.02 0.47 2.52 16 12 C 0.16 4.92 3.60 46.55 0.17 5.09 16 13 H 0.11 3.03 8.09 -2.39 -0.02 3.01 16 14 N -0.72 -32.18 5.22 -315.59 -1.65 -33.83 16 15 C -0.25 -12.30 9.96 84.03 0.84 -11.46 16 16 H 0.09 4.16 7.83 -2.91 -0.02 4.13 16 17 C -0.07 -3.67 5.50 84.86 0.47 -3.21 16 18 N -0.96 -57.97 13.06 21.65 0.28 -57.69 16 19 Si 0.97 43.56 29.55 68.60 2.03 45.59 16 20 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 21 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 23 C 0.11 3.04 3.96 46.18 0.18 3.22 16 24 H 0.14 3.53 8.14 -2.39 -0.02 3.51 16 25 N -0.27 -8.72 2.31 -321.54 -0.74 -9.47 16 26 C -0.04 -1.16 9.26 83.49 0.77 -0.39 16 27 C -0.06 -1.96 12.05 83.73 1.01 -0.95 16 28 N -0.31 -12.68 12.41 -58.26 -0.72 -13.40 16 29 N -0.11 -4.48 12.43 37.02 0.46 -4.02 16 30 C 0.11 2.44 5.92 86.73 0.51 2.96 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 0.86 6.68 -2.39 -0.02 0.85 16 36 H 0.07 1.50 8.02 -2.39 -0.02 1.48 16 37 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.09 0.97 6.82 -2.39 -0.02 0.95 16 40 H 0.06 0.98 7.97 -2.39 -0.02 0.96 16 41 H 0.10 2.20 7.50 -2.39 -0.02 2.18 16 42 H 0.06 1.76 7.40 -2.39 -0.02 1.74 16 43 H 0.38 19.24 6.11 -92.71 -0.57 18.68 16 44 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 45 H 0.21 4.56 7.70 -2.91 -0.02 4.54 16 46 H 0.22 4.98 8.06 -2.91 -0.02 4.96 16 47 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 48 H 0.08 1.79 7.29 -2.38 -0.02 1.78 16 Total: -1.00 -74.20 391.91 3.14 -71.06 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: 0.40 Total: 35.79 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 7.43 Total: 9.03 kcal Atomic # 7 Polarization: -129.50 SS G_CDS: -5.07 Total: -134.57 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -1.65 Total: -26.90 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -74.20 3.14 -71.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130129392.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.201 kcal (2) G-P(sol) polarization free energy of solvation -74.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds