Wall clock time and date at job start Tue Mar 31 2020 19:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46680 * 2 1 4 4 C 1.53003 * 109.46991 * 240.00774 * 2 1 3 5 5 C 1.50698 * 109.47306 * 64.99841 * 4 2 1 6 6 O 1.21277 * 120.00145 * 359.97438 * 5 4 2 7 7 N 1.34778 * 119.99760 * 180.02562 * 5 4 2 8 8 C 1.46498 * 120.00056 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47472 * 179.97438 * 8 7 5 10 10 N 1.46898 * 109.47221 * 179.97438 * 9 8 7 11 11 C 1.46904 * 110.99759 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.46807 * 180.02562 * 11 10 9 13 13 O 1.21286 * 120.00068 * 359.97438 * 12 11 10 14 14 N 1.34778 * 119.99829 * 179.97438 * 12 11 10 15 15 C 1.37092 * 119.99993 * 179.97438 * 14 12 11 16 16 H 1.08004 * 120.00451 * 0.02562 * 15 14 12 17 17 C 1.38954 * 120.00151 * 179.97438 * 15 14 12 18 18 N 1.31411 * 120.00268 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99705 * 0.02562 * 17 15 14 20 20 H 1.48492 * 109.47218 * 89.99662 * 19 17 15 21 21 H 1.48504 * 109.46544 * 209.99665 * 19 17 15 22 22 H 1.48498 * 109.47010 * 329.99261 * 19 17 15 23 23 C 1.50695 * 109.47550 * 120.00199 * 2 1 3 24 24 C 1.39870 * 126.03480 * 59.68926 * 23 2 1 25 25 N 1.30839 * 108.20307 * 180.26430 * 24 23 2 26 26 N 1.40087 * 108.20037 * 0.02562 * 25 24 23 27 27 C 1.46503 * 126.03503 * 180.02562 * 26 25 24 28 28 C 1.34939 * 107.93005 * 0.02562 * 26 25 24 29 29 H 1.09007 * 109.46897 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47530 * 299.99528 * 1 2 3 31 31 H 1.09004 * 109.47589 * 59.99737 * 1 2 3 32 32 H 1.09008 * 109.46753 * 184.99714 * 4 2 1 33 33 H 1.09001 * 109.46791 * 304.99360 * 4 2 1 34 34 H 0.96996 * 120.00252 * 359.97438 * 7 5 4 35 35 H 1.09002 * 109.46779 * 299.99750 * 8 7 5 36 36 H 1.09001 * 109.47424 * 59.98954 * 8 7 5 37 37 H 1.08994 * 109.47179 * 300.00047 * 9 8 7 38 38 H 1.09008 * 109.46816 * 60.00077 * 9 8 7 39 39 H 1.00895 * 111.00139 * 56.04960 * 10 9 8 40 40 H 1.08996 * 109.47127 * 300.00144 * 11 10 9 41 41 H 1.08994 * 109.47273 * 60.00221 * 11 10 9 42 42 H 0.97007 * 119.99954 * 0.02562 * 14 12 11 43 43 H 0.96996 * 120.00357 * 180.02562 * 18 17 15 44 44 H 1.08001 * 125.90246 * 0.26835 * 24 23 2 45 45 H 1.09002 * 109.47095 * 269.97899 * 27 26 25 46 46 H 1.09005 * 109.47183 * 29.97817 * 27 26 25 47 47 H 1.08999 * 109.47391 * 149.97530 * 27 26 25 48 48 H 1.07999 * 126.13213 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.6413 0.0573 -2.4766 6 8 1.0109 1.0871 -2.3632 7 7 1.9844 -0.3916 -3.7002 8 6 1.5973 0.3654 -4.8933 9 6 2.1072 -0.3558 -6.1426 10 7 1.7185 0.4029 -7.3389 11 6 2.1918 -0.2616 -8.5605 12 6 1.7757 0.5443 -9.7641 13 8 1.1465 1.5709 -9.6185 14 7 2.1029 0.1242 -11.0023 15 6 1.7240 0.8570 -12.0972 16 1 1.1637 1.7712 -11.9676 17 6 2.0618 0.4242 -13.3737 18 7 1.6982 1.1264 -14.4232 19 14 3.0315 -1.1565 -13.5977 20 1 2.0922 -2.2992 -13.7282 21 1 3.8635 -1.0571 -14.8238 22 1 3.9098 -1.3697 -12.4195 23 6 2.0324 -0.7104 1.2304 24 6 1.7686 -2.0391 1.5787 25 7 2.3698 -2.2913 2.7131 26 7 3.0357 -1.1291 3.1232 27 6 3.8338 -0.9778 4.3425 28 6 2.8124 -0.1735 2.1970 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 3.1264 -0.7993 -1.2057 33 1 1.6054 -1.7197 -1.2953 34 1 2.4883 -1.2154 -3.7909 35 1 0.5110 0.4443 -4.9368 36 1 2.0325 1.3637 -4.8473 37 1 3.1934 -0.4345 -6.0988 38 1 1.6721 -1.3542 -6.1887 39 1 2.0553 1.3527 -7.2899 40 1 3.2786 -0.3396 -8.5339 41 1 1.7573 -1.2593 -8.6230 42 1 2.6059 -0.6971 -11.1187 43 1 1.9336 0.8241 -15.3143 44 1 1.1717 -2.7365 1.0097 45 1 3.1927 -0.6398 5.1567 46 1 4.2804 -1.9367 4.6057 47 1 4.6220 -0.2445 4.1722 48 1 3.1892 0.8383 2.2223 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131731564.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:24 Heat of formation + Delta-G solvation = 5.839427 kcal Electronic energy + Delta-G solvation = -27150.898410 eV Core-core repulsion = 23049.679165 eV Total energy + Delta-G solvation = -4101.219245 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.67619 -39.98503 -38.52229 -36.58789 -35.54103 -34.39044 -33.80553 -33.17161 -31.68014 -30.38230 -29.66725 -27.92501 -26.94445 -25.96623 -23.81642 -22.98502 -22.12949 -21.53768 -20.71061 -19.80838 -19.40634 -18.38873 -17.48384 -16.93603 -16.30785 -16.16259 -15.91552 -15.83368 -15.60735 -14.91961 -14.82826 -14.74666 -14.33937 -14.04816 -13.85060 -13.61202 -13.42604 -13.35934 -13.16680 -13.04644 -12.89899 -12.73213 -12.49043 -12.27603 -11.90224 -11.80444 -11.58703 -11.53014 -11.42613 -11.30357 -11.15886 -10.76305 -10.60911 -9.98708 -9.93324 -9.83985 -9.58525 -9.23323 -8.77086 -8.63711 -8.24749 -8.18264 -6.31789 -3.83400 1.47136 2.09508 2.37591 2.47867 2.92127 3.00958 3.05886 3.14146 3.72120 4.03068 4.08946 4.18512 4.39109 4.45242 4.57283 4.62372 4.73861 4.78381 4.80417 4.86115 4.88639 5.01876 5.07289 5.21258 5.24220 5.25249 5.32713 5.36336 5.40779 5.55759 5.63987 5.74836 5.78617 5.84335 5.87926 5.93391 6.04355 6.12580 6.22118 6.33188 6.56637 6.97270 7.27824 7.28556 7.47548 7.56999 8.05323 8.13562 8.58631 8.94141 9.41291 9.81204 10.81335 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033909 B = 0.001333 C = 0.001305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.532815 B =20996.647869 C =21449.304488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.006 3.994 3 H 0.082 0.918 4 C -0.132 4.132 5 C 0.512 3.488 6 O -0.534 6.534 7 N -0.732 5.732 8 C 0.119 3.881 9 C 0.050 3.950 10 N -0.665 5.665 11 C 0.050 3.950 12 C 0.449 3.551 13 O -0.563 6.563 14 N -0.590 5.590 15 C -0.306 4.306 16 H 0.120 0.880 17 C 0.042 3.958 18 N -0.881 5.881 19 Si 0.880 3.120 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.270 1.270 23 C -0.229 4.229 24 C 0.055 3.945 25 N -0.299 5.299 26 N -0.379 5.379 27 C 0.102 3.898 28 C 0.056 3.944 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.399 0.601 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.032 0.968 38 H 0.077 0.923 39 H 0.354 0.646 40 H 0.046 0.954 41 H 0.089 0.911 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.181 0.819 45 H 0.074 0.926 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.281 -9.214 35.496 37.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.014 4.014 3 H 0.100 0.900 4 C -0.172 4.172 5 C 0.298 3.702 6 O -0.410 6.410 7 N -0.384 5.384 8 C -0.004 4.004 9 C -0.081 4.081 10 N -0.299 5.299 11 C -0.083 4.083 12 C 0.234 3.766 13 O -0.445 6.445 14 N -0.229 5.229 15 C -0.435 4.435 16 H 0.138 0.862 17 C -0.161 4.161 18 N -0.521 5.521 19 Si 0.707 3.293 20 H -0.196 1.196 21 H -0.202 1.202 22 H -0.196 1.196 23 C -0.240 4.240 24 C -0.131 4.131 25 N -0.120 5.120 26 N -0.161 5.161 27 C -0.040 4.040 28 C -0.090 4.090 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.233 0.767 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.050 0.950 38 H 0.095 0.905 39 H 0.174 0.826 40 H 0.064 0.936 41 H 0.107 0.893 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.198 0.802 45 H 0.092 0.908 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 6.092 -8.853 36.441 37.992 hybrid contribution 1.949 -0.940 -1.045 2.404 sum 8.042 -9.793 35.395 37.595 Atomic orbital electron populations 1.21939 0.94031 1.01566 1.03006 1.19114 0.96089 0.98133 0.88067 0.89969 1.21744 1.02913 1.00252 0.92275 1.20706 0.79172 0.85821 0.84485 1.90700 1.39308 1.24510 1.86526 1.45974 1.58370 1.27969 1.06104 1.21263 1.01571 0.95056 0.82558 1.22085 0.97726 0.98401 0.89846 1.59915 1.64304 1.06140 0.99520 1.21701 0.97856 0.98704 0.90027 1.19677 0.85342 0.87927 0.83623 1.90577 1.42723 1.25819 1.85366 1.42195 1.50992 1.23783 1.05971 1.19445 1.33590 1.07785 0.82658 0.86244 1.25037 0.97847 0.98073 0.95143 1.69620 1.45652 1.38424 0.98378 0.86666 0.80412 0.83724 0.78532 1.19582 1.20189 1.19565 1.20078 1.07972 0.95338 1.00613 1.23751 0.99214 0.96192 0.93985 1.77369 1.13439 1.06069 1.15161 1.48456 1.40264 1.08436 1.18975 1.21854 0.94422 1.04102 0.83596 1.22376 1.00282 0.95677 0.90618 0.93268 0.92983 0.90402 0.88989 0.88823 0.76719 0.90160 0.91397 0.94960 0.90470 0.82633 0.93633 0.89331 0.79689 0.91595 0.80205 0.90778 0.89316 0.89457 0.80974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.82 37.16 0.33 -0.89 16 2 C 0.01 0.04 2.40 -91.77 -0.22 -0.18 16 3 H 0.08 0.67 7.92 -51.93 -0.41 0.26 16 4 C -0.13 -0.82 5.04 -27.88 -0.14 -0.96 16 5 C 0.51 4.79 7.55 -10.99 -0.08 4.71 16 6 O -0.53 -7.13 13.96 5.56 0.08 -7.05 16 7 N -0.73 -5.89 5.56 -60.30 -0.33 -6.23 16 8 C 0.12 1.25 5.93 -4.04 -0.02 1.22 16 9 C 0.05 0.51 5.80 -3.83 -0.02 0.49 16 10 N -0.67 -9.84 6.13 -115.06 -0.70 -10.54 16 11 C 0.05 0.79 6.17 -4.97 -0.03 0.76 16 12 C 0.45 10.06 7.82 -10.98 -0.09 9.98 16 13 O -0.56 -15.11 15.78 5.55 0.09 -15.02 16 14 N -0.59 -13.90 5.09 -10.96 -0.06 -13.96 16 15 C -0.31 -8.64 10.16 -14.93 -0.15 -8.79 16 16 H 0.12 3.86 7.39 -52.48 -0.39 3.48 16 17 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 18 N -0.88 -25.67 13.96 55.50 0.77 -24.89 16 19 Si 0.88 19.15 27.74 -169.99 -4.71 14.44 16 20 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 23 C -0.23 -1.63 4.80 -105.06 -0.50 -2.13 16 24 C 0.05 0.42 11.54 -17.36 -0.20 0.22 16 25 N -0.30 -2.76 12.58 30.63 0.39 -2.38 16 26 N -0.38 -2.67 4.01 -68.16 -0.27 -2.94 16 27 C 0.10 0.31 11.47 59.85 0.69 1.00 16 28 C 0.06 0.36 11.38 -17.23 -0.20 0.16 16 29 H 0.05 0.35 8.02 -51.93 -0.42 -0.07 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.81 5.95 -51.93 -0.31 0.50 16 32 H 0.09 0.46 8.14 -51.92 -0.42 0.04 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.40 2.04 8.47 -40.82 -0.35 1.69 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 39 H 0.35 5.48 8.43 -39.29 -0.33 5.15 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.37 7.59 5.76 -40.82 -0.24 7.36 16 43 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.18 0.97 8.06 -52.49 -0.42 0.55 16 45 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 46 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 47 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 48 H 0.17 0.62 8.06 -52.49 -0.42 0.20 16 LS Contribution 403.97 15.07 6.09 6.09 Total: -1.00 -37.36 403.97 -6.94 -44.30 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -7.52 Total: 11.54 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -0.74 Total: 6.65 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: -0.21 Total: -60.94 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: 0.17 Total: -22.07 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.71 Total: 14.44 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -37.36 -6.94 -44.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131731564.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.139 kcal (2) G-P(sol) polarization free energy of solvation -37.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds