Wall clock time and date at job start Tue Mar 31 2020 19:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46680 * 2 1 4 4 C 1.53003 * 109.46991 * 240.00774 * 2 1 3 5 5 C 1.50698 * 109.47306 * 64.99841 * 4 2 1 6 6 O 1.21277 * 120.00145 * 359.97438 * 5 4 2 7 7 N 1.34778 * 119.99760 * 180.02562 * 5 4 2 8 8 C 1.46498 * 120.00056 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47472 * 179.97438 * 8 7 5 10 10 N 1.46898 * 109.47221 * 179.97438 * 9 8 7 11 11 C 1.46904 * 110.99759 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.46807 * 180.02562 * 11 10 9 13 13 O 1.21286 * 120.00068 * 359.97438 * 12 11 10 14 14 N 1.34778 * 119.99829 * 179.97438 * 12 11 10 15 15 C 1.37092 * 119.99993 * 179.97438 * 14 12 11 16 16 H 1.08004 * 120.00451 * 0.02562 * 15 14 12 17 17 C 1.38954 * 120.00151 * 179.97438 * 15 14 12 18 18 N 1.31411 * 120.00268 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99705 * 0.02562 * 17 15 14 20 20 H 1.48492 * 109.47218 * 89.99662 * 19 17 15 21 21 H 1.48504 * 109.46544 * 209.99665 * 19 17 15 22 22 H 1.48498 * 109.47010 * 329.99261 * 19 17 15 23 23 C 1.50695 * 109.47550 * 120.00199 * 2 1 3 24 24 C 1.39870 * 126.03480 * 59.68926 * 23 2 1 25 25 N 1.30839 * 108.20307 * 180.26430 * 24 23 2 26 26 N 1.40087 * 108.20037 * 0.02562 * 25 24 23 27 27 C 1.46503 * 126.03503 * 180.02562 * 26 25 24 28 28 C 1.34939 * 107.93005 * 0.02562 * 26 25 24 29 29 H 1.09007 * 109.46897 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47530 * 299.99528 * 1 2 3 31 31 H 1.09004 * 109.47589 * 59.99737 * 1 2 3 32 32 H 1.09008 * 109.46753 * 184.99714 * 4 2 1 33 33 H 1.09001 * 109.46791 * 304.99360 * 4 2 1 34 34 H 0.96996 * 120.00252 * 359.97438 * 7 5 4 35 35 H 1.09002 * 109.46779 * 299.99750 * 8 7 5 36 36 H 1.09001 * 109.47424 * 59.98954 * 8 7 5 37 37 H 1.08994 * 109.47179 * 300.00047 * 9 8 7 38 38 H 1.09008 * 109.46816 * 60.00077 * 9 8 7 39 39 H 1.00895 * 111.00139 * 56.04960 * 10 9 8 40 40 H 1.08996 * 109.47127 * 300.00144 * 11 10 9 41 41 H 1.08994 * 109.47273 * 60.00221 * 11 10 9 42 42 H 0.97007 * 119.99954 * 0.02562 * 14 12 11 43 43 H 0.96996 * 120.00357 * 180.02562 * 18 17 15 44 44 H 1.08001 * 125.90246 * 0.26835 * 24 23 2 45 45 H 1.09002 * 109.47095 * 269.97899 * 27 26 25 46 46 H 1.09005 * 109.47183 * 29.97817 * 27 26 25 47 47 H 1.08999 * 109.47391 * 149.97530 * 27 26 25 48 48 H 1.07999 * 126.13213 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.6413 0.0573 -2.4766 6 8 1.0109 1.0871 -2.3632 7 7 1.9844 -0.3916 -3.7002 8 6 1.5973 0.3654 -4.8933 9 6 2.1072 -0.3558 -6.1426 10 7 1.7185 0.4029 -7.3389 11 6 2.1918 -0.2616 -8.5605 12 6 1.7757 0.5443 -9.7641 13 8 1.1465 1.5709 -9.6185 14 7 2.1029 0.1242 -11.0023 15 6 1.7240 0.8570 -12.0972 16 1 1.1637 1.7712 -11.9676 17 6 2.0618 0.4242 -13.3737 18 7 1.6982 1.1264 -14.4232 19 14 3.0315 -1.1565 -13.5977 20 1 2.0922 -2.2992 -13.7282 21 1 3.8635 -1.0571 -14.8238 22 1 3.9098 -1.3697 -12.4195 23 6 2.0324 -0.7104 1.2304 24 6 1.7686 -2.0391 1.5787 25 7 2.3698 -2.2913 2.7131 26 7 3.0357 -1.1291 3.1232 27 6 3.8338 -0.9778 4.3425 28 6 2.8124 -0.1735 2.1970 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 3.1264 -0.7993 -1.2057 33 1 1.6054 -1.7197 -1.2953 34 1 2.4883 -1.2154 -3.7909 35 1 0.5110 0.4443 -4.9368 36 1 2.0325 1.3637 -4.8473 37 1 3.1934 -0.4345 -6.0988 38 1 1.6721 -1.3542 -6.1887 39 1 2.0553 1.3527 -7.2899 40 1 3.2786 -0.3396 -8.5339 41 1 1.7573 -1.2593 -8.6230 42 1 2.6059 -0.6971 -11.1187 43 1 1.9336 0.8241 -15.3143 44 1 1.1717 -2.7365 1.0097 45 1 3.1927 -0.6398 5.1567 46 1 4.2804 -1.9367 4.6057 47 1 4.6220 -0.2445 4.1722 48 1 3.1892 0.8383 2.2223 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131731564.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:23 Heat of formation + Delta-G solvation = -25.452107 kcal Electronic energy + Delta-G solvation = -27152.255313 eV Core-core repulsion = 23049.679165 eV Total energy + Delta-G solvation = -4102.576148 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.16468 -40.74335 -40.27912 -37.57348 -36.25257 -35.95146 -35.13064 -33.73842 -33.60641 -31.14624 -30.38178 -28.79722 -27.41440 -27.29324 -25.33008 -23.68712 -22.95452 -22.02377 -21.39265 -21.27453 -20.37568 -20.24882 -18.20122 -17.72663 -17.40743 -17.19973 -16.92992 -16.74881 -16.43547 -16.26520 -15.72938 -15.44149 -15.28034 -15.23765 -14.91772 -14.80145 -14.45011 -14.24305 -14.05966 -13.91097 -13.71358 -13.63249 -13.39357 -13.29901 -13.13023 -12.94750 -12.57609 -12.44820 -12.39410 -12.26412 -12.03132 -11.96175 -11.88805 -11.50219 -11.31102 -10.72479 -10.44212 -10.33332 -10.23969 -10.01657 -9.35786 -9.26151 -8.40128 -6.01561 0.99881 1.31544 1.37889 1.46615 1.72988 1.76378 1.85819 1.96914 2.17996 2.24931 2.85874 3.16325 3.49237 3.67185 3.85672 3.94431 4.04327 4.13171 4.18381 4.20430 4.28852 4.38883 4.45583 4.46816 4.50870 4.51472 4.62619 4.71365 4.73326 4.80434 4.82156 4.89433 4.95795 5.01082 5.09811 5.26986 5.43029 5.47518 5.53463 5.58284 5.78307 5.89746 6.02857 6.17499 6.32967 6.60683 6.66075 6.78947 6.89274 7.38717 7.40818 7.98051 8.77685 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033909 B = 0.001333 C = 0.001305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.532815 B =20996.647869 C =21449.304488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.013 3.987 3 H 0.070 0.930 4 C -0.121 4.121 5 C 0.508 3.492 6 O -0.580 6.580 7 N -0.718 5.718 8 C 0.126 3.874 9 C 0.059 3.941 10 N -0.691 5.691 11 C 0.066 3.934 12 C 0.445 3.555 13 O -0.617 6.617 14 N -0.589 5.589 15 C -0.332 4.332 16 H 0.053 0.947 17 C -0.015 4.015 18 N -0.936 5.936 19 Si 0.967 3.033 20 H -0.257 1.257 21 H -0.276 1.276 22 H -0.228 1.228 23 C -0.238 4.238 24 C 0.050 3.950 25 N -0.338 5.338 26 N -0.384 5.384 27 C 0.093 3.907 28 C 0.057 3.943 29 H 0.059 0.941 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.418 0.582 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.345 0.655 40 H 0.083 0.917 41 H 0.119 0.881 42 H 0.391 0.609 43 H 0.279 0.721 44 H 0.196 0.804 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.113 0.887 48 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.096 -12.833 37.229 40.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.007 4.007 3 H 0.088 0.912 4 C -0.161 4.161 5 C 0.296 3.704 6 O -0.460 6.460 7 N -0.371 5.371 8 C 0.001 3.999 9 C -0.069 4.069 10 N -0.324 5.324 11 C -0.066 4.066 12 C 0.233 3.767 13 O -0.502 6.502 14 N -0.231 5.231 15 C -0.461 4.461 16 H 0.071 0.929 17 C -0.214 4.214 18 N -0.576 5.576 19 Si 0.787 3.213 20 H -0.181 1.181 21 H -0.201 1.201 22 H -0.151 1.151 23 C -0.250 4.250 24 C -0.135 4.135 25 N -0.160 5.160 26 N -0.166 5.166 27 C -0.047 4.047 28 C -0.090 4.090 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.255 0.745 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.114 0.886 39 H 0.164 0.836 40 H 0.101 0.899 41 H 0.137 0.863 42 H 0.227 0.773 43 H 0.089 0.911 44 H 0.213 0.787 45 H 0.100 0.900 46 H 0.107 0.893 47 H 0.131 0.869 48 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 8.938 -12.530 38.217 41.201 hybrid contribution 0.990 0.338 -1.494 1.824 sum 9.929 -12.192 36.723 39.948 Atomic orbital electron populations 1.21875 0.95081 1.01754 1.01440 1.18980 0.95127 0.97747 0.88869 0.91159 1.21735 1.04144 1.00370 0.89844 1.21317 0.78216 0.85357 0.85504 1.90694 1.41418 1.26707 1.87170 1.45808 1.57996 1.28290 1.05011 1.21010 0.99908 0.94996 0.83938 1.22078 0.99362 0.98160 0.87348 1.59890 1.65431 1.06295 1.00802 1.21623 1.00087 0.98151 0.86789 1.21077 0.83135 0.87449 0.85019 1.90556 1.44674 1.28527 1.86400 1.42007 1.51681 1.24219 1.05217 1.19021 1.34782 1.07052 0.85257 0.92884 1.26149 0.98597 1.02869 0.93742 1.69810 1.47237 1.41275 0.99302 0.85337 0.78934 0.77155 0.79896 1.18145 1.20142 1.15105 1.20051 1.08782 0.95287 1.00852 1.24059 0.98982 0.96707 0.93760 1.77310 1.14857 1.07713 1.16165 1.48769 1.40071 1.07942 1.19802 1.22147 0.94904 1.04982 0.82659 1.22842 0.99572 0.96531 0.90061 0.92170 0.93511 0.92908 0.86995 0.86617 0.74530 0.92766 0.92970 0.92279 0.88617 0.83618 0.89944 0.86276 0.77321 0.91147 0.78696 0.89984 0.89303 0.86905 0.78507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 8.82 71.98 0.63 -1.70 16 2 C 0.01 0.17 2.40 -11.54 -0.03 0.15 16 3 H 0.07 1.11 7.92 -2.39 -0.02 1.09 16 4 C -0.12 -1.23 5.04 29.85 0.15 -1.08 16 5 C 0.51 8.90 7.55 87.66 0.66 9.56 16 6 O -0.58 -15.77 13.96 -3.02 -0.04 -15.81 16 7 N -0.72 -9.98 5.56 -463.07 -2.57 -12.55 16 8 C 0.13 2.50 5.93 86.38 0.51 3.01 16 9 C 0.06 1.02 5.80 86.30 0.50 1.52 16 10 N -0.69 -19.10 6.13 -517.94 -3.17 -22.27 16 11 C 0.07 1.85 6.17 85.56 0.53 2.38 16 12 C 0.45 19.76 7.82 87.66 0.69 20.45 16 13 O -0.62 -34.40 15.78 -3.05 -0.05 -34.44 16 14 N -0.59 -27.32 5.09 -306.98 -1.56 -28.88 16 15 C -0.33 -19.44 10.16 84.04 0.85 -18.58 16 16 H 0.05 3.73 7.39 -2.91 -0.02 3.70 16 17 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 18 N -0.94 -56.44 13.96 21.66 0.30 -56.14 16 19 Si 0.97 38.04 27.74 68.60 1.90 39.94 16 20 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 21 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 22 H -0.23 -7.36 6.52 99.48 0.65 -6.71 16 23 C -0.24 -3.01 4.80 -20.15 -0.10 -3.11 16 24 C 0.05 0.70 11.54 85.24 0.98 1.68 16 25 N -0.34 -5.87 12.58 -57.02 -0.72 -6.58 16 26 N -0.38 -4.80 4.01 -369.56 -1.48 -6.28 16 27 C 0.09 0.41 11.47 127.77 1.47 1.88 16 28 C 0.06 0.62 11.38 83.54 0.95 1.57 16 29 H 0.06 0.80 8.02 -2.38 -0.02 0.78 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 1.14 5.95 -2.39 -0.01 1.13 16 32 H 0.11 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.42 2.71 8.47 -92.71 -0.79 1.93 16 35 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.10 1.34 8.14 -2.38 -0.02 1.33 16 39 H 0.35 10.51 8.43 -89.70 -0.76 9.75 16 40 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 42 H 0.39 14.68 5.76 -92.70 -0.53 14.15 16 43 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 44 H 0.20 1.76 8.06 -2.91 -0.02 1.74 16 45 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 46 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 47 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 48 H 0.20 0.96 8.06 -2.91 -0.02 0.93 16 Total: -1.00 -89.68 403.97 -0.26 -89.94 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: -1.14 Total: 35.73 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: 8.27 Total: 17.35 kcal Atomic # 7 Polarization: -123.50 SS G_CDS: -9.21 Total: -132.71 kcal Atomic # 8 Polarization: -50.16 SS G_CDS: -0.09 Total: -50.25 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 1.90 Total: 39.94 kcal Total: -89.68 -0.26 -89.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131731564.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.489 kcal (2) G-P(sol) polarization free energy of solvation -89.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds