Wall clock time and date at job start Tue Mar 31 2020 19:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 5 5 C 1.50701 * 109.47212 * 295.00231 * 4 2 1 6 6 O 1.21280 * 119.99781 * 0.02562 * 5 4 2 7 7 N 1.34780 * 119.99795 * 179.97438 * 5 4 2 8 8 C 1.46497 * 119.99566 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.46983 * 180.02562 * 8 7 5 10 10 N 1.46899 * 109.47254 * 179.97438 * 9 8 7 11 11 C 1.46904 * 111.00029 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47280 * 180.02562 * 11 10 9 13 13 O 1.21297 * 119.99908 * 359.97438 * 12 11 10 14 14 N 1.34772 * 120.00172 * 180.02562 * 12 11 10 15 15 C 1.37100 * 120.00199 * 179.97438 * 14 12 11 16 16 H 1.08003 * 119.99543 * 0.02562 * 15 14 12 17 17 C 1.38943 * 120.00117 * 179.97438 * 15 14 12 18 18 N 1.31412 * 120.00181 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 120.00111 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.46845 * 359.97438 * 19 17 15 21 21 H 1.48490 * 109.47080 * 120.00096 * 19 17 15 22 22 H 1.48500 * 109.47017 * 240.00188 * 19 17 15 23 23 C 1.50698 * 109.47043 * 240.00465 * 2 1 3 24 24 C 1.39871 * 126.03918 * 299.68052 * 23 2 1 25 25 N 1.30828 * 108.20376 * 179.82452 * 24 23 2 26 26 N 1.40083 * 108.20823 * 0.44243 * 25 24 23 27 27 C 1.46503 * 126.04194 * 179.74121 * 26 25 24 28 28 C 1.34950 * 107.92190 * 359.71498 * 26 25 24 29 29 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 30 30 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 32 32 H 1.09002 * 109.47153 * 175.00232 * 4 2 1 33 33 H 1.09001 * 109.46832 * 55.00423 * 4 2 1 34 34 H 0.96995 * 120.00011 * 0.02562 * 7 5 4 35 35 H 1.09001 * 109.47487 * 300.00114 * 8 7 5 36 36 H 1.09002 * 109.47182 * 60.00342 * 8 7 5 37 37 H 1.09001 * 109.47289 * 299.99909 * 9 8 7 38 38 H 1.09002 * 109.47153 * 59.99993 * 9 8 7 39 39 H 1.00898 * 110.99862 * 56.04911 * 10 9 8 40 40 H 1.08995 * 109.47167 * 300.00240 * 11 10 9 41 41 H 1.09003 * 109.46905 * 60.00478 * 11 10 9 42 42 H 0.96999 * 120.00336 * 0.02562 * 14 12 11 43 43 H 0.97005 * 119.99794 * 179.97438 * 18 17 15 44 44 H 1.08013 * 125.89420 * 0.02562 * 24 23 2 45 45 H 1.09000 * 109.46608 * 269.97697 * 27 26 25 46 46 H 1.08998 * 109.46584 * 29.97271 * 27 26 25 47 47 H 1.09000 * 109.46884 * 149.97702 * 27 26 25 48 48 H 1.07999 * 126.12758 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 8 1.0109 1.0870 2.3632 7 7 1.9845 -0.3918 3.7002 8 6 1.5964 0.3645 4.8933 9 6 2.1065 -0.3566 6.1425 10 7 1.7179 0.4021 7.3389 11 6 2.1915 -0.2623 8.5605 12 6 1.7745 0.5428 9.7642 13 8 1.1451 1.5695 9.6187 14 7 2.1016 0.1227 11.0023 15 6 1.7227 0.8554 12.0973 16 1 1.1617 1.7692 11.9677 17 6 2.0596 0.4220 13.3737 18 7 2.7418 -0.6900 13.5313 19 14 1.5427 1.4201 14.8658 20 1 0.7906 2.6210 14.4216 21 1 0.6776 0.5895 15.7414 22 1 2.7496 1.8435 15.6204 23 6 2.0323 -0.7103 -1.2305 24 6 1.7786 -2.0425 -1.5729 25 7 2.3777 -2.2939 -2.7085 26 7 3.0410 -1.1308 -3.1203 27 6 3.8401 -0.9798 -4.3389 28 6 2.8135 -0.1738 -2.1964 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.1264 -0.7993 1.2056 33 1 1.6054 -1.7197 1.2951 34 1 2.4884 -1.2156 3.7908 35 1 2.0309 1.3632 4.8478 36 1 0.5101 0.4426 4.9366 37 1 1.6724 -1.3553 6.1883 38 1 3.1929 -0.4343 6.0990 39 1 0.7194 0.5439 7.3686 40 1 1.7572 -1.2601 8.6230 41 1 3.2784 -0.3401 8.5338 42 1 2.6059 -0.6977 11.1186 43 1 2.9773 -0.9924 14.4225 44 1 1.1872 -2.7419 -1.0003 45 1 4.8775 -1.2388 -4.1274 46 1 3.4509 -1.6414 -5.1127 47 1 3.7862 0.0531 -4.6829 48 1 3.1875 0.8390 -2.2233 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131731565.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:27 Heat of formation + Delta-G solvation = -1.580247 kcal Electronic energy + Delta-G solvation = -27095.682752 eV Core-core repulsion = 22994.141766 eV Total energy + Delta-G solvation = -4101.540986 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.65561 -39.94853 -38.32757 -36.50968 -35.50097 -34.32962 -33.73616 -33.15137 -31.24566 -30.32934 -29.59230 -27.84404 -26.92829 -25.84004 -23.95412 -22.98556 -22.06951 -21.51727 -20.67815 -19.78238 -19.27356 -17.91279 -17.45575 -16.91389 -16.26235 -16.11167 -15.91026 -15.83184 -15.45342 -14.89610 -14.77695 -14.50571 -14.20062 -14.15974 -13.75479 -13.64263 -13.43501 -13.37933 -13.18875 -13.08322 -12.86066 -12.66031 -12.36182 -11.92738 -11.76268 -11.52277 -11.48034 -11.45623 -11.40043 -11.26161 -11.04989 -10.74266 -10.34152 -10.22952 -9.90293 -9.81936 -9.52600 -9.19212 -8.75008 -8.50439 -8.12864 -7.96915 -6.42445 -3.83198 1.49182 2.11490 2.39652 2.51194 2.96787 3.16446 3.27254 3.34840 3.89567 4.05316 4.13205 4.38084 4.41257 4.49956 4.59538 4.64788 4.77867 4.80930 4.89455 4.91361 4.99355 5.09166 5.18117 5.25524 5.26729 5.28085 5.38170 5.40050 5.42438 5.66093 5.72711 5.83257 5.88851 5.92365 5.95916 6.06349 6.14261 6.22400 6.26888 6.35665 6.58674 7.10255 7.30111 7.32648 7.55161 7.57320 8.05851 8.08832 8.60381 9.17465 9.53338 10.04662 10.75346 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.041954 B = 0.001274 C = 0.001257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.230159 B =21976.687542 C =22275.417506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.006 3.994 3 H 0.082 0.918 4 C -0.132 4.132 5 C 0.512 3.488 6 O -0.535 6.535 7 N -0.731 5.731 8 C 0.120 3.880 9 C 0.049 3.951 10 N -0.666 5.666 11 C 0.052 3.948 12 C 0.440 3.560 13 O -0.582 6.582 14 N -0.563 5.563 15 C -0.299 4.299 16 H 0.104 0.896 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 0.929 3.071 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.281 1.281 23 C -0.228 4.228 24 C 0.055 3.945 25 N -0.299 5.299 26 N -0.379 5.379 27 C 0.102 3.898 28 C 0.056 3.944 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.399 0.601 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.032 0.968 38 H 0.076 0.924 39 H 0.352 0.648 40 H 0.045 0.955 41 H 0.087 0.913 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.181 0.819 45 H 0.074 0.926 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.273 -5.928 -33.060 33.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.014 4.014 3 H 0.101 0.899 4 C -0.172 4.172 5 C 0.298 3.702 6 O -0.411 6.411 7 N -0.384 5.384 8 C -0.004 4.004 9 C -0.081 4.081 10 N -0.299 5.299 11 C -0.080 4.080 12 C 0.225 3.775 13 O -0.466 6.466 14 N -0.200 5.200 15 C -0.429 4.429 16 H 0.122 0.878 17 C -0.179 4.179 18 N -0.543 5.543 19 Si 0.756 3.244 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.207 1.207 23 C -0.240 4.240 24 C -0.132 4.132 25 N -0.120 5.120 26 N -0.161 5.161 27 C -0.040 4.040 28 C -0.089 4.089 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.233 0.767 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.050 0.950 38 H 0.095 0.905 39 H 0.172 0.828 40 H 0.063 0.937 41 H 0.105 0.895 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.198 0.802 45 H 0.093 0.907 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 3.318 -4.994 -34.134 34.657 hybrid contribution -0.222 -0.754 1.622 1.802 sum 3.096 -5.748 -32.512 33.162 Atomic orbital electron populations 1.21934 0.94082 1.01519 1.02969 1.19116 0.96056 0.98173 0.88070 0.89938 1.21743 1.02974 1.00204 0.92277 1.20702 0.79187 0.85801 0.84494 1.90696 1.39422 1.24487 1.86539 1.45979 1.58314 1.27967 1.06105 1.21267 1.00410 0.96069 0.82669 1.22084 1.01206 0.94803 0.89994 1.59947 1.21278 1.48809 0.99841 1.21669 1.01186 0.95375 0.89800 1.19785 0.85714 0.87965 0.84027 1.90537 1.44288 1.26101 1.85661 1.41859 1.49494 1.24240 1.04406 1.19769 1.32785 1.06732 0.83582 0.87825 1.25258 0.96895 0.96640 0.99110 1.69621 1.38964 1.21790 1.23969 0.85800 0.78299 0.79598 0.80663 1.19172 1.20770 1.20740 1.20080 1.07991 0.95239 1.00668 1.23748 0.99228 0.96128 0.94057 1.77360 1.13494 1.06079 1.15110 1.48457 1.40183 1.08395 1.19107 1.21853 0.94610 1.03583 0.83918 1.22381 1.00065 0.95725 0.90776 0.92999 0.93304 0.90437 0.88931 0.88873 0.76694 0.90264 0.91405 0.94964 0.90530 0.82817 0.93726 0.89478 0.77464 0.91928 0.80218 0.90737 0.89346 0.89476 0.80964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.83 37.16 0.33 -0.90 16 2 C 0.01 0.04 2.40 -91.77 -0.22 -0.18 16 3 H 0.08 0.69 7.92 -51.92 -0.41 0.28 16 4 C -0.13 -0.86 5.03 -27.88 -0.14 -1.00 16 5 C 0.51 4.98 7.55 -10.98 -0.08 4.90 16 6 O -0.53 -7.31 13.96 5.56 0.08 -7.23 16 7 N -0.73 -6.24 5.56 -60.30 -0.33 -6.58 16 8 C 0.12 1.32 5.93 -4.04 -0.02 1.29 16 9 C 0.05 0.55 5.80 -3.83 -0.02 0.52 16 10 N -0.67 -10.41 6.13 -115.06 -0.70 -11.12 16 11 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 12 C 0.44 10.32 7.82 -10.99 -0.09 10.23 16 13 O -0.58 -15.84 15.78 5.54 0.09 -15.76 16 14 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16 15 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 16 H 0.10 3.04 7.16 -52.48 -0.38 2.67 16 17 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 18 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 19 Si 0.93 21.01 29.55 -169.99 -5.02 15.98 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 23 C -0.23 -1.68 4.80 -105.05 -0.50 -2.18 16 24 C 0.05 0.43 11.54 -17.37 -0.20 0.23 16 25 N -0.30 -2.81 12.57 30.63 0.39 -2.43 16 26 N -0.38 -2.74 4.01 -68.16 -0.27 -3.02 16 27 C 0.10 0.33 11.47 59.85 0.69 1.02 16 28 C 0.06 0.37 11.38 -17.22 -0.20 0.18 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.35 8.03 -51.92 -0.42 -0.06 16 31 H 0.08 0.82 5.95 -51.93 -0.31 0.51 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.40 2.26 8.47 -40.82 -0.35 1.91 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.35 5.73 8.43 -39.29 -0.33 5.40 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 43 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.18 1.01 8.06 -52.48 -0.42 0.58 16 45 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 46 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 47 H 0.09 0.09 8.14 -51.93 -0.42 -0.34 16 48 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 407.10 15.07 6.13 6.13 Total: -1.00 -36.05 407.10 -7.28 -43.34 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -7.57 Total: 11.60 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -0.73 Total: 7.00 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: -0.26 Total: -61.07 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: 0.17 Total: -22.98 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -36.05 -7.28 -43.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131731565.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.755 kcal (2) G-P(sol) polarization free energy of solvation -36.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds