Wall clock time and date at job start Tue Mar 31 2020 19:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 5 5 C 1.50701 * 109.47212 * 295.00231 * 4 2 1 6 6 O 1.21280 * 119.99781 * 0.02562 * 5 4 2 7 7 N 1.34780 * 119.99795 * 179.97438 * 5 4 2 8 8 C 1.46497 * 119.99566 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.46983 * 180.02562 * 8 7 5 10 10 N 1.46899 * 109.47254 * 179.97438 * 9 8 7 11 11 C 1.46904 * 111.00029 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47280 * 180.02562 * 11 10 9 13 13 O 1.21297 * 119.99908 * 359.97438 * 12 11 10 14 14 N 1.34772 * 120.00172 * 180.02562 * 12 11 10 15 15 C 1.37100 * 120.00199 * 179.97438 * 14 12 11 16 16 H 1.08003 * 119.99543 * 0.02562 * 15 14 12 17 17 C 1.38943 * 120.00117 * 179.97438 * 15 14 12 18 18 N 1.31412 * 120.00181 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 120.00111 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.46845 * 359.97438 * 19 17 15 21 21 H 1.48490 * 109.47080 * 120.00096 * 19 17 15 22 22 H 1.48500 * 109.47017 * 240.00188 * 19 17 15 23 23 C 1.50698 * 109.47043 * 240.00465 * 2 1 3 24 24 C 1.39871 * 126.03918 * 299.68052 * 23 2 1 25 25 N 1.30828 * 108.20376 * 179.82452 * 24 23 2 26 26 N 1.40083 * 108.20823 * 0.44243 * 25 24 23 27 27 C 1.46503 * 126.04194 * 179.74121 * 26 25 24 28 28 C 1.34950 * 107.92190 * 359.71498 * 26 25 24 29 29 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 30 30 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 32 32 H 1.09002 * 109.47153 * 175.00232 * 4 2 1 33 33 H 1.09001 * 109.46832 * 55.00423 * 4 2 1 34 34 H 0.96995 * 120.00011 * 0.02562 * 7 5 4 35 35 H 1.09001 * 109.47487 * 300.00114 * 8 7 5 36 36 H 1.09002 * 109.47182 * 60.00342 * 8 7 5 37 37 H 1.09001 * 109.47289 * 299.99909 * 9 8 7 38 38 H 1.09002 * 109.47153 * 59.99993 * 9 8 7 39 39 H 1.00898 * 110.99862 * 56.04911 * 10 9 8 40 40 H 1.08995 * 109.47167 * 300.00240 * 11 10 9 41 41 H 1.09003 * 109.46905 * 60.00478 * 11 10 9 42 42 H 0.96999 * 120.00336 * 0.02562 * 14 12 11 43 43 H 0.97005 * 119.99794 * 179.97438 * 18 17 15 44 44 H 1.08013 * 125.89420 * 0.02562 * 24 23 2 45 45 H 1.09000 * 109.46608 * 269.97697 * 27 26 25 46 46 H 1.08998 * 109.46584 * 29.97271 * 27 26 25 47 47 H 1.09000 * 109.46884 * 149.97702 * 27 26 25 48 48 H 1.07999 * 126.12758 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 8 1.0109 1.0870 2.3632 7 7 1.9845 -0.3918 3.7002 8 6 1.5964 0.3645 4.8933 9 6 2.1065 -0.3566 6.1425 10 7 1.7179 0.4021 7.3389 11 6 2.1915 -0.2623 8.5605 12 6 1.7745 0.5428 9.7642 13 8 1.1451 1.5695 9.6187 14 7 2.1016 0.1227 11.0023 15 6 1.7227 0.8554 12.0973 16 1 1.1617 1.7692 11.9677 17 6 2.0596 0.4220 13.3737 18 7 2.7418 -0.6900 13.5313 19 14 1.5427 1.4201 14.8658 20 1 0.7906 2.6210 14.4216 21 1 0.6776 0.5895 15.7414 22 1 2.7496 1.8435 15.6204 23 6 2.0323 -0.7103 -1.2305 24 6 1.7786 -2.0425 -1.5729 25 7 2.3777 -2.2939 -2.7085 26 7 3.0410 -1.1308 -3.1203 27 6 3.8401 -0.9798 -4.3389 28 6 2.8135 -0.1738 -2.1964 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.1264 -0.7993 1.2056 33 1 1.6054 -1.7197 1.2951 34 1 2.4884 -1.2156 3.7908 35 1 2.0309 1.3632 4.8478 36 1 0.5101 0.4426 4.9366 37 1 1.6724 -1.3553 6.1883 38 1 3.1929 -0.4343 6.0990 39 1 0.7194 0.5439 7.3686 40 1 1.7572 -1.2601 8.6230 41 1 3.2784 -0.3401 8.5338 42 1 2.6059 -0.6977 11.1186 43 1 2.9773 -0.9924 14.4225 44 1 1.1872 -2.7419 -1.0003 45 1 4.8775 -1.2388 -4.1274 46 1 3.4509 -1.6414 -5.1127 47 1 3.7862 0.0531 -4.6829 48 1 3.1875 0.8390 -2.2233 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131731565.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:26 Heat of formation + Delta-G solvation = -30.200284 kcal Electronic energy + Delta-G solvation = -27096.923810 eV Core-core repulsion = 22994.141766 eV Total energy + Delta-G solvation = -4102.782044 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.16389 -40.74171 -40.13653 -37.55965 -36.24444 -35.91896 -35.11362 -33.60645 -33.26023 -31.11518 -30.35981 -28.73855 -27.39263 -27.28220 -25.50373 -23.69771 -22.96198 -22.02525 -21.39115 -21.08240 -20.34941 -19.90759 -18.21085 -17.74895 -17.37047 -17.18727 -16.97976 -16.53321 -16.38140 -16.26132 -15.88671 -15.55858 -15.37118 -15.22283 -14.88757 -14.70594 -14.45035 -14.09343 -13.95901 -13.73373 -13.62484 -13.51233 -13.32998 -13.28618 -13.12494 -12.91578 -12.56663 -12.46001 -12.39227 -12.27457 -12.11005 -12.03320 -11.88605 -11.50905 -11.31078 -10.72472 -10.35380 -10.33145 -10.02085 -10.00589 -9.36258 -9.26040 -8.46406 -5.94896 0.99978 1.37245 1.42916 1.56890 1.73068 1.76001 1.85815 2.05897 2.17291 2.32619 3.06344 3.21280 3.56324 3.67422 3.85141 3.94577 4.04215 4.13979 4.19838 4.28436 4.33596 4.38807 4.45990 4.49390 4.50639 4.53498 4.63877 4.71503 4.73500 4.79829 4.82256 4.89306 4.95245 4.99871 5.09845 5.27155 5.41835 5.43145 5.47598 5.57683 5.78316 5.86717 6.08723 6.17597 6.34456 6.60894 6.65367 6.79016 7.13642 7.37868 7.57060 8.12787 8.71118 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.041954 B = 0.001274 C = 0.001257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.230159 B =21976.687542 C =22275.417506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.013 3.987 3 H 0.070 0.930 4 C -0.122 4.122 5 C 0.508 3.492 6 O -0.579 6.579 7 N -0.718 5.718 8 C 0.128 3.872 9 C 0.058 3.942 10 N -0.686 5.686 11 C 0.068 3.932 12 C 0.435 3.565 13 O -0.625 6.625 14 N -0.572 5.572 15 C -0.335 4.335 16 H 0.077 0.923 17 C -0.010 4.010 18 N -0.919 5.919 19 Si 0.991 3.009 20 H -0.274 1.274 21 H -0.270 1.270 22 H -0.271 1.271 23 C -0.238 4.238 24 C 0.050 3.950 25 N -0.338 5.338 26 N -0.384 5.384 27 C 0.093 3.907 28 C 0.056 3.944 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.417 0.583 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.345 0.655 40 H 0.073 0.927 41 H 0.109 0.891 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.196 0.804 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.111 0.889 48 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.512 -7.330 -33.769 34.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.007 4.007 3 H 0.088 0.912 4 C -0.161 4.161 5 C 0.297 3.703 6 O -0.459 6.459 7 N -0.372 5.372 8 C 0.003 3.997 9 C -0.071 4.071 10 N -0.319 5.319 11 C -0.064 4.064 12 C 0.222 3.778 13 O -0.512 6.512 14 N -0.209 5.209 15 C -0.464 4.464 16 H 0.095 0.905 17 C -0.210 4.210 18 N -0.560 5.560 19 Si 0.815 3.185 20 H -0.199 1.199 21 H -0.195 1.195 22 H -0.196 1.196 23 C -0.250 4.250 24 C -0.135 4.135 25 N -0.160 5.160 26 N -0.166 5.166 27 C -0.047 4.047 28 C -0.090 4.090 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.254 0.746 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.111 0.889 39 H 0.164 0.836 40 H 0.090 0.910 41 H 0.127 0.873 42 H 0.232 0.768 43 H 0.087 0.913 44 H 0.213 0.787 45 H 0.103 0.897 46 H 0.106 0.894 47 H 0.130 0.870 48 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 4.604 -6.467 -34.865 35.758 hybrid contribution -0.597 -0.293 1.748 1.870 sum 4.007 -6.759 -33.118 34.037 Atomic orbital electron populations 1.21869 0.94997 1.01749 1.01473 1.18984 0.95207 0.97745 0.88800 0.91153 1.21737 1.04122 1.00380 0.89891 1.21313 0.78232 0.85351 0.85448 1.90690 1.41465 1.26606 1.87154 1.45824 1.58009 1.28267 1.05061 1.20995 0.99396 0.95441 0.83832 1.22080 1.02181 0.95114 0.87706 1.59919 1.20914 1.50354 1.00753 1.21524 1.02455 0.95116 0.87298 1.20956 0.83972 0.87685 0.85166 1.90506 1.45917 1.28282 1.86503 1.41915 1.49991 1.24348 1.04657 1.19702 1.34398 1.06980 0.85370 0.90469 1.25997 0.96407 0.97535 1.01092 1.69671 1.38933 1.22416 1.24996 0.84896 0.78255 0.78008 0.77337 1.19916 1.19535 1.19604 1.20052 1.08810 0.95200 1.00907 1.24058 0.99001 0.96641 0.93828 1.77301 1.14924 1.07700 1.16106 1.48772 1.39991 1.07880 1.19948 1.22147 0.94609 1.05208 0.82721 1.22845 0.99334 0.96590 0.90246 0.93451 0.92183 0.92873 0.87093 0.86616 0.74598 0.92650 0.92803 0.92555 0.88948 0.83616 0.90955 0.87316 0.76849 0.91284 0.78692 0.89719 0.89420 0.87035 0.78509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.83 71.98 0.64 -1.72 16 2 C 0.01 0.18 2.40 -11.54 -0.03 0.15 16 3 H 0.07 1.15 7.92 -2.38 -0.02 1.13 16 4 C -0.12 -1.34 5.03 29.85 0.15 -1.19 16 5 C 0.51 9.38 7.55 87.66 0.66 10.04 16 6 O -0.58 -16.10 13.96 -3.03 -0.04 -16.14 16 7 N -0.72 -10.97 5.56 -463.06 -2.57 -13.55 16 8 C 0.13 2.72 5.93 86.38 0.51 3.23 16 9 C 0.06 1.15 5.80 86.30 0.50 1.65 16 10 N -0.69 -20.65 6.13 -517.93 -3.17 -23.83 16 11 C 0.07 2.21 6.17 85.56 0.53 2.73 16 12 C 0.43 20.47 7.82 87.66 0.69 21.16 16 13 O -0.63 -34.93 15.78 -3.08 -0.05 -34.98 16 14 N -0.57 -29.03 5.29 -306.99 -1.62 -30.65 16 15 C -0.33 -19.03 9.68 84.04 0.81 -18.22 16 16 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 17 C -0.01 -0.56 5.50 84.92 0.47 -0.09 16 18 N -0.92 -49.10 13.05 21.66 0.28 -48.82 16 19 Si 0.99 42.86 29.55 68.60 2.03 44.89 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 C -0.24 -3.15 4.80 -20.14 -0.10 -3.25 16 24 C 0.05 0.72 11.54 85.24 0.98 1.70 16 25 N -0.34 -6.03 12.57 -57.02 -0.72 -6.75 16 26 N -0.38 -4.99 4.01 -369.56 -1.48 -6.48 16 27 C 0.09 0.45 11.47 127.77 1.47 1.92 16 28 C 0.06 0.65 11.38 83.54 0.95 1.60 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.81 8.03 -2.38 -0.02 0.80 16 31 H 0.05 1.15 5.95 -2.39 -0.01 1.14 16 32 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.42 3.42 8.47 -92.71 -0.79 2.63 16 35 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.35 11.17 8.43 -89.70 -0.76 10.41 16 40 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.11 3.08 8.14 -2.39 -0.02 3.07 16 42 H 0.40 18.94 7.90 -92.71 -0.73 18.21 16 43 H 0.28 13.84 8.31 -92.70 -0.77 13.07 16 44 H 0.20 1.85 8.06 -2.90 -0.02 1.83 16 45 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 46 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 48 H 0.20 1.07 8.06 -2.91 -0.02 1.05 16 Total: -1.00 -80.36 407.10 -0.40 -80.76 By element: Atomic # 1 Polarization: 37.09 SS G_CDS: -1.28 Total: 35.81 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: 8.23 Total: 19.73 kcal Atomic # 7 Polarization: -120.78 SS G_CDS: -9.29 Total: -130.06 kcal Atomic # 8 Polarization: -51.03 SS G_CDS: -0.09 Total: -51.12 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -80.36 -0.40 -80.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131731565.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.556 kcal (2) G-P(sol) polarization free energy of solvation -80.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds