Wall clock time and date at job start Tue Mar 31 2020 20:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46973 * 2 1 4 4 N 1.39931 * 125.75135 * 269.97529 * 3 2 1 5 5 C 1.30449 * 108.89399 * 179.77739 * 4 3 2 6 6 C 1.50703 * 125.98936 * 180.26413 * 5 4 3 7 7 C 1.41292 * 108.02576 * 0.37804 * 5 4 3 8 8 C 1.47425 * 126.41658 * 179.88269 * 7 5 4 9 9 O 1.21603 * 120.00000 * 269.68993 * 8 7 5 10 10 N 1.34777 * 119.99743 * 89.68684 * 8 7 5 11 11 C 1.46499 * 119.99665 * 179.72398 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 N 1.46898 * 109.46947 * 180.02562 * 12 11 10 14 14 C 1.46904 * 110.99459 * 179.97438 * 13 12 11 15 15 C 1.50705 * 109.46807 * 179.97438 * 14 13 12 16 16 O 1.21290 * 120.00074 * 0.02562 * 15 14 13 17 17 N 1.34775 * 119.99911 * 179.97438 * 15 14 13 18 18 C 1.37094 * 120.00169 * 179.97438 * 17 15 14 19 19 H 1.07999 * 120.00091 * 0.02562 * 18 17 15 20 20 C 1.38953 * 120.00239 * 180.02562 * 18 17 15 21 21 N 1.31409 * 120.00067 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00103 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46970 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47040 * 119.99982 * 22 20 18 25 25 H 1.48497 * 109.47112 * 239.99867 * 22 20 18 26 26 C 1.34263 * 125.75436 * 89.99823 * 3 2 1 27 27 C 1.50698 * 126.29124 * 359.95534 * 26 3 2 28 28 H 1.09006 * 109.46817 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47486 * 300.00021 * 1 2 3 30 30 H 1.08998 * 109.47053 * 60.00630 * 1 2 3 31 31 H 1.08997 * 109.47464 * 239.99490 * 2 1 3 32 32 H 1.09007 * 109.46908 * 119.99944 * 2 1 3 33 33 H 1.09004 * 109.46577 * 270.13763 * 6 5 4 34 34 H 1.09008 * 109.47034 * 30.13334 * 6 5 4 35 35 H 1.08999 * 109.47402 * 150.13588 * 6 5 4 36 36 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 37 37 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 38 38 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 39 39 H 1.08995 * 109.46638 * 300.00121 * 12 11 10 40 40 H 1.09006 * 109.47139 * 60.00254 * 12 11 10 41 41 H 1.00894 * 111.00658 * 56.04933 * 13 12 11 42 42 H 1.08992 * 109.47591 * 299.99636 * 14 13 12 43 43 H 1.09001 * 109.47600 * 60.00212 * 14 13 12 44 44 H 0.97001 * 120.00445 * 0.02562 * 17 15 14 45 45 H 0.96999 * 120.00459 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.47190 * 270.02928 * 27 26 3 47 47 H 1.09005 * 109.47100 * 30.02634 * 27 26 3 48 48 H 1.08996 * 109.47266 * 150.02453 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2913 2.1519 -1.1356 5 6 2.7027 3.3306 -0.7573 6 6 3.0965 4.4653 -1.6675 7 6 2.7170 3.3561 0.6553 8 6 3.1177 4.4914 1.5061 9 8 4.2759 4.6086 1.8579 10 7 2.2005 5.3996 1.8939 11 6 2.5975 6.5244 2.7443 12 6 1.3751 7.3951 3.0420 13 7 1.7734 8.5233 3.8943 14 6 0.6225 9.3833 4.2009 15 6 1.0688 10.5267 5.0754 16 8 2.2312 10.6166 5.4099 17 7 0.1764 11.4499 5.4849 18 6 0.5821 12.4898 6.2809 19 1 1.6170 12.5694 6.5794 20 6 -0.3380 13.4413 6.7036 21 7 -1.5973 13.3443 6.3408 22 14 0.2150 14.8586 7.7875 23 1 1.6714 14.7400 8.0526 24 1 -0.0601 16.1451 7.0988 25 1 -0.5266 14.8170 9.0734 26 6 2.2798 2.1209 1.0896 27 6 2.1240 1.6833 2.5232 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 4.1614 4.3992 -1.8906 34 1 2.5265 4.4022 -2.5945 35 1 2.8865 5.4152 -1.1758 36 1 1.2766 5.3060 1.6136 37 1 3.0098 6.1452 3.6795 38 1 3.3515 7.1204 2.2301 39 1 0.9628 7.7743 2.1070 40 1 0.6211 6.7992 3.5564 41 1 2.5174 9.0543 3.4671 42 1 0.2052 9.7760 3.2738 43 1 -0.1368 8.8016 4.7235 44 1 -0.7532 11.3783 5.2171 45 1 -2.2397 14.0083 6.6361 46 1 1.1176 1.9204 2.8682 47 1 2.2887 0.6081 2.5948 48 1 2.8530 2.2046 3.1435 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135409106.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:04 Heat of formation + Delta-G solvation = -6.588900 kcal Electronic energy + Delta-G solvation = -27858.529360 eV Core-core repulsion = 23756.771182 eV Total energy + Delta-G solvation = -4101.758178 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.84848 -39.37781 -38.30428 -36.24225 -35.41707 -34.28914 -33.71798 -32.86877 -31.34579 -31.21514 -29.54247 -28.13480 -27.58575 -25.98574 -24.28195 -23.67448 -22.32769 -21.79827 -20.04717 -19.76812 -19.27571 -17.93880 -17.72984 -16.74948 -16.27549 -16.08510 -15.82336 -15.61923 -15.05387 -14.97071 -14.52789 -14.35252 -14.21248 -13.86577 -13.81649 -13.73712 -13.56628 -13.45963 -13.27809 -13.11998 -12.88750 -12.70427 -12.43792 -12.32305 -12.24748 -11.91081 -11.86496 -11.51895 -11.45190 -11.40470 -11.08049 -11.04519 -10.33989 -10.22873 -10.09781 -9.53886 -9.52383 -9.18992 -8.85402 -8.49890 -8.12234 -7.96704 -6.42226 -3.82941 1.33112 1.92922 2.13373 2.45832 3.08957 3.16620 3.27399 3.35048 3.89976 3.95228 4.07722 4.13780 4.35617 4.38502 4.43784 4.49890 4.64431 4.75513 4.89802 4.96458 4.98216 5.00605 5.06331 5.11209 5.18775 5.26277 5.30839 5.35390 5.40016 5.41482 5.49488 5.55007 5.65726 5.73479 5.86694 5.92122 5.95987 6.18274 6.22418 6.29746 6.51415 7.10915 7.29841 7.36471 7.55392 7.58242 8.06120 8.11036 8.60647 9.17701 9.53647 10.04983 10.75579 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024408 B = 0.001570 C = 0.001544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.903224 B =17831.297709 C =18131.618142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.125 3.875 3 N -0.358 5.358 4 N -0.297 5.297 5 C 0.114 3.886 6 C -0.077 4.077 7 C -0.286 4.286 8 C 0.599 3.401 9 O -0.532 6.532 10 N -0.721 5.721 11 C 0.119 3.881 12 C 0.050 3.950 13 N -0.665 5.665 14 C 0.052 3.948 15 C 0.440 3.560 16 O -0.581 6.581 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.129 3.871 27 C -0.100 4.100 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.400 0.600 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.033 0.967 40 H 0.076 0.924 41 H 0.353 0.647 42 H 0.045 0.955 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.088 0.912 47 H 0.076 0.924 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.067 -27.277 -15.174 31.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.004 3.996 3 N -0.138 5.138 4 N -0.119 5.119 5 C -0.053 4.053 6 C -0.136 4.136 7 C -0.301 4.301 8 C 0.383 3.617 9 O -0.408 6.408 10 N -0.373 5.373 11 C -0.004 4.004 12 C -0.080 4.080 13 N -0.299 5.299 14 C -0.080 4.080 15 C 0.226 3.774 16 O -0.465 6.465 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.122 0.878 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.001 4.001 27 C -0.158 4.158 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.234 0.766 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.051 0.949 40 H 0.095 0.905 41 H 0.172 0.828 42 H 0.063 0.937 43 H 0.105 0.895 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.106 0.894 47 H 0.095 0.905 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.048 -28.248 -15.052 32.025 hybrid contribution -0.969 1.493 0.059 1.781 sum 0.079 -26.755 -14.993 30.670 Atomic orbital electron populations 1.22188 0.93826 1.03356 1.03462 1.21766 0.95542 0.77548 1.04748 1.48357 1.50218 1.12153 1.03088 1.77114 1.23674 1.03860 1.07201 1.22308 0.96789 0.94130 0.92082 1.20259 1.02454 0.93208 0.97634 1.19821 1.20534 0.96057 0.93710 1.17254 0.84835 0.80883 0.78681 1.90810 1.18647 1.75606 1.55696 1.45953 1.12230 1.26582 1.52526 1.21309 0.97034 0.87020 0.95082 1.22078 0.96717 0.93646 0.95607 1.59943 1.10148 1.11742 1.48025 1.21670 0.93308 0.94390 0.98675 1.19784 0.86932 0.84788 0.85945 1.90535 1.18226 1.77092 1.60694 1.41863 1.10377 1.22726 1.45090 1.19770 0.96745 1.01249 1.25079 0.87813 1.25266 0.94947 0.99291 0.98468 1.69617 1.02066 1.36732 1.45941 0.85793 0.79042 0.80246 0.79229 1.19181 1.20779 1.20755 1.21340 0.96963 0.90784 0.91062 1.20591 1.04283 1.02478 0.88427 0.90224 0.91825 0.91433 0.88369 0.88679 0.89924 0.90351 0.90334 0.76597 0.90123 0.91235 0.94903 0.90512 0.82782 0.93710 0.89492 0.77466 0.91933 0.89375 0.90472 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.62 10.24 37.16 0.38 -0.24 16 2 C 0.12 0.58 6.93 -4.04 -0.03 0.55 16 3 N -0.36 -3.07 3.58 -56.60 -0.20 -3.28 16 4 N -0.30 -3.22 12.50 33.90 0.42 -2.80 16 5 C 0.11 1.22 7.26 -82.02 -0.60 0.62 16 6 C -0.08 -0.64 10.28 36.01 0.37 -0.27 16 7 C -0.29 -3.12 5.88 -105.07 -0.62 -3.73 16 8 C 0.60 7.31 6.97 -12.52 -0.09 7.22 16 9 O -0.53 -8.68 17.11 5.27 0.09 -8.59 16 10 N -0.72 -7.09 5.55 -61.38 -0.34 -7.43 16 11 C 0.12 1.35 5.93 -4.04 -0.02 1.33 16 12 C 0.05 0.56 5.80 -3.82 -0.02 0.53 16 13 N -0.67 -10.39 6.13 -115.05 -0.70 -11.10 16 14 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 15 C 0.44 10.31 7.82 -10.98 -0.09 10.23 16 16 O -0.58 -15.81 15.78 5.55 0.09 -15.72 16 17 N -0.56 -14.20 5.29 -10.96 -0.06 -14.26 16 18 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 19 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.42 13.05 55.50 0.72 -23.70 16 22 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 26 C 0.13 1.16 7.01 -81.60 -0.57 0.58 16 27 C -0.10 -0.59 9.93 36.00 0.36 -0.23 16 28 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 0.24 7.02 -51.93 -0.36 -0.13 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 35 H 0.08 0.61 8.01 -51.93 -0.42 0.20 16 36 H 0.40 3.00 8.46 -40.82 -0.35 2.65 16 37 H 0.08 1.05 8.14 -51.92 -0.42 0.62 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.35 5.72 8.43 -39.29 -0.33 5.39 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 45 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.08 0.29 7.05 -51.93 -0.37 -0.08 16 48 H 0.09 0.65 7.96 -51.93 -0.41 0.24 16 LS Contribution 411.39 15.07 6.20 6.20 Total: -1.00 -36.16 411.39 -7.57 -43.72 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -7.57 Total: 11.49 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: -1.20 Total: 9.47 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: -0.16 Total: -62.56 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: 0.18 Total: -24.31 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -36.16 -7.57 -43.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135409106.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.136 kcal (2) G-P(sol) polarization free energy of solvation -36.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds