Wall clock time and date at job start Tue Mar 31 2020 20:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46973 * 2 1 4 4 N 1.39931 * 125.75135 * 269.97529 * 3 2 1 5 5 C 1.30449 * 108.89399 * 179.77739 * 4 3 2 6 6 C 1.50703 * 125.98936 * 180.26413 * 5 4 3 7 7 C 1.41292 * 108.02576 * 0.37804 * 5 4 3 8 8 C 1.47425 * 126.41658 * 179.88269 * 7 5 4 9 9 O 1.21603 * 120.00000 * 269.68993 * 8 7 5 10 10 N 1.34777 * 119.99743 * 89.68684 * 8 7 5 11 11 C 1.46499 * 119.99665 * 179.72398 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 N 1.46898 * 109.46947 * 180.02562 * 12 11 10 14 14 C 1.46904 * 110.99459 * 179.97438 * 13 12 11 15 15 C 1.50705 * 109.46807 * 179.97438 * 14 13 12 16 16 O 1.21290 * 120.00074 * 0.02562 * 15 14 13 17 17 N 1.34775 * 119.99911 * 179.97438 * 15 14 13 18 18 C 1.37094 * 120.00169 * 179.97438 * 17 15 14 19 19 H 1.07999 * 120.00091 * 0.02562 * 18 17 15 20 20 C 1.38953 * 120.00239 * 180.02562 * 18 17 15 21 21 N 1.31409 * 120.00067 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00103 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46970 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47040 * 119.99982 * 22 20 18 25 25 H 1.48497 * 109.47112 * 239.99867 * 22 20 18 26 26 C 1.34263 * 125.75436 * 89.99823 * 3 2 1 27 27 C 1.50698 * 126.29124 * 359.95534 * 26 3 2 28 28 H 1.09006 * 109.46817 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47486 * 300.00021 * 1 2 3 30 30 H 1.08998 * 109.47053 * 60.00630 * 1 2 3 31 31 H 1.08997 * 109.47464 * 239.99490 * 2 1 3 32 32 H 1.09007 * 109.46908 * 119.99944 * 2 1 3 33 33 H 1.09004 * 109.46577 * 270.13763 * 6 5 4 34 34 H 1.09008 * 109.47034 * 30.13334 * 6 5 4 35 35 H 1.08999 * 109.47402 * 150.13588 * 6 5 4 36 36 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 37 37 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 38 38 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 39 39 H 1.08995 * 109.46638 * 300.00121 * 12 11 10 40 40 H 1.09006 * 109.47139 * 60.00254 * 12 11 10 41 41 H 1.00894 * 111.00658 * 56.04933 * 13 12 11 42 42 H 1.08992 * 109.47591 * 299.99636 * 14 13 12 43 43 H 1.09001 * 109.47600 * 60.00212 * 14 13 12 44 44 H 0.97001 * 120.00445 * 0.02562 * 17 15 14 45 45 H 0.96999 * 120.00459 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.47190 * 270.02928 * 27 26 3 47 47 H 1.09005 * 109.47100 * 30.02634 * 27 26 3 48 48 H 1.08996 * 109.47266 * 150.02453 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2913 2.1519 -1.1356 5 6 2.7027 3.3306 -0.7573 6 6 3.0965 4.4653 -1.6675 7 6 2.7170 3.3561 0.6553 8 6 3.1177 4.4914 1.5061 9 8 4.2759 4.6086 1.8579 10 7 2.2005 5.3996 1.8939 11 6 2.5975 6.5244 2.7443 12 6 1.3751 7.3951 3.0420 13 7 1.7734 8.5233 3.8943 14 6 0.6225 9.3833 4.2009 15 6 1.0688 10.5267 5.0754 16 8 2.2312 10.6166 5.4099 17 7 0.1764 11.4499 5.4849 18 6 0.5821 12.4898 6.2809 19 1 1.6170 12.5694 6.5794 20 6 -0.3380 13.4413 6.7036 21 7 -1.5973 13.3443 6.3408 22 14 0.2150 14.8586 7.7875 23 1 1.6714 14.7400 8.0526 24 1 -0.0601 16.1451 7.0988 25 1 -0.5266 14.8170 9.0734 26 6 2.2798 2.1209 1.0896 27 6 2.1240 1.6833 2.5232 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 4.1614 4.3992 -1.8906 34 1 2.5265 4.4022 -2.5945 35 1 2.8865 5.4152 -1.1758 36 1 1.2766 5.3060 1.6136 37 1 3.0098 6.1452 3.6795 38 1 3.3515 7.1204 2.2301 39 1 0.9628 7.7743 2.1070 40 1 0.6211 6.7992 3.5564 41 1 2.5174 9.0543 3.4671 42 1 0.2052 9.7760 3.2738 43 1 -0.1368 8.8016 4.7235 44 1 -0.7532 11.3783 5.2171 45 1 -2.2397 14.0083 6.6361 46 1 1.1176 1.9204 2.8682 47 1 2.2887 0.6081 2.5948 48 1 2.8530 2.2046 3.1435 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135409106.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:03 Heat of formation + Delta-G solvation = -35.505054 kcal Electronic energy + Delta-G solvation = -27859.783259 eV Core-core repulsion = 23756.771182 eV Total energy + Delta-G solvation = -4103.012076 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.54369 -40.37284 -40.09145 -37.43430 -35.97740 -35.96147 -35.14755 -33.45319 -33.25192 -31.93106 -30.60709 -28.88596 -28.23011 -27.49426 -25.67165 -24.46479 -23.21761 -22.64488 -21.08267 -20.87178 -20.39564 -19.90781 -18.58884 -17.74641 -17.43485 -17.25634 -16.93124 -16.53032 -16.30936 -16.09254 -15.87548 -15.43580 -15.31467 -15.00764 -14.86962 -14.63536 -14.35036 -14.29317 -14.09869 -13.95426 -13.83299 -13.51373 -13.42995 -13.29963 -13.11523 -12.95776 -12.91387 -12.73637 -12.57079 -12.40352 -12.37258 -12.21591 -12.10720 -11.80230 -11.50536 -11.08460 -10.35006 -10.19707 -10.14410 -10.00340 -9.58308 -9.36303 -8.46083 -5.94508 0.66620 1.34276 1.37574 1.39471 1.43179 1.52018 1.57216 2.06487 2.16166 2.32618 3.05517 3.21513 3.42325 3.51502 3.60049 3.85966 3.88431 4.04480 4.06631 4.12738 4.17926 4.30397 4.33669 4.35533 4.49154 4.52990 4.59723 4.63714 4.66287 4.68793 4.74083 4.80369 4.89098 4.92981 4.97824 4.99492 5.07196 5.21491 5.35880 5.42499 5.48664 5.86290 5.95344 6.08630 6.34619 6.52164 6.59502 6.61348 7.13992 7.21633 7.57558 8.13243 8.71446 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024408 B = 0.001570 C = 0.001544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.903224 B =17831.297709 C =18131.618142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.114 3.886 3 N -0.355 5.355 4 N -0.323 5.323 5 C 0.103 3.897 6 C -0.076 4.076 7 C -0.316 4.316 8 C 0.606 3.394 9 O -0.581 6.581 10 N -0.703 5.703 11 C 0.127 3.873 12 C 0.059 3.941 13 N -0.685 5.685 14 C 0.068 3.932 15 C 0.436 3.564 16 O -0.625 6.625 17 N -0.573 5.573 18 C -0.334 4.334 19 H 0.078 0.922 20 C -0.012 4.012 21 N -0.919 5.919 22 Si 0.992 3.008 23 H -0.275 1.275 24 H -0.271 1.271 25 H -0.271 1.271 26 C 0.136 3.864 27 C -0.098 4.098 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.101 0.899 32 H 0.122 0.878 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.415 0.585 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.094 0.906 41 H 0.346 0.654 42 H 0.072 0.928 43 H 0.109 0.891 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.108 0.892 47 H 0.103 0.897 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.878 -28.654 -15.342 32.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.005 4.005 3 N -0.134 5.134 4 N -0.145 5.145 5 C -0.064 4.064 6 C -0.135 4.135 7 C -0.331 4.331 8 C 0.391 3.609 9 O -0.460 6.460 10 N -0.355 5.355 11 C 0.003 3.997 12 C -0.070 4.070 13 N -0.318 5.318 14 C -0.064 4.064 15 C 0.223 3.777 16 O -0.511 6.511 17 N -0.210 5.210 18 C -0.464 4.464 19 H 0.096 0.904 20 C -0.212 4.212 21 N -0.560 5.560 22 Si 0.816 3.184 23 H -0.199 1.199 24 H -0.196 1.196 25 H -0.196 1.196 26 C 0.004 3.996 27 C -0.156 4.156 28 H 0.121 0.879 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.119 0.881 32 H 0.140 0.860 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.251 0.749 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.112 0.888 41 H 0.165 0.835 42 H 0.090 0.910 43 H 0.127 0.873 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.126 0.874 47 H 0.121 0.879 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.841 -29.656 -15.257 33.361 hybrid contribution -0.416 1.806 0.087 1.856 sum -1.257 -27.850 -15.170 31.739 Atomic orbital electron populations 1.22145 0.92898 1.04578 1.02521 1.22178 0.96290 0.75775 1.06286 1.48704 1.49307 1.13055 1.02377 1.77051 1.24562 1.04222 1.08635 1.22616 0.96772 0.94631 0.92367 1.20306 1.02545 0.92709 0.97919 1.19819 1.22856 0.96630 0.93774 1.17442 0.84194 0.81151 0.78082 1.90782 1.20716 1.76814 1.57712 1.45757 1.12704 1.25501 1.51490 1.21107 0.97072 0.87193 0.94322 1.22062 0.96642 0.92140 0.96139 1.59912 1.09727 1.12301 1.49828 1.21528 0.93956 0.92399 0.98548 1.20941 0.86040 0.85399 0.85298 1.90505 1.20167 1.78254 1.62195 1.41922 1.10899 1.22866 1.45326 1.19704 0.96087 1.03349 1.27250 0.90425 1.26016 0.94926 1.01072 0.99174 1.69667 1.02616 1.37516 1.46239 0.84880 0.78172 0.77460 0.77874 1.19928 1.19576 1.19609 1.21762 0.95387 0.90104 0.92377 1.20712 1.04924 1.03932 0.86069 0.87907 0.91723 0.93333 0.88066 0.85966 0.90042 0.89123 0.90148 0.74850 0.91930 0.92357 0.92631 0.88776 0.83535 0.90980 0.87259 0.76855 0.91296 0.87404 0.87861 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.82 10.24 71.98 0.74 -0.09 16 2 C 0.11 0.80 6.93 86.38 0.60 1.40 16 3 N -0.35 -5.60 3.58 -332.99 -1.19 -6.79 16 4 N -0.32 -6.85 12.50 -46.67 -0.58 -7.43 16 5 C 0.10 2.18 7.26 43.52 0.32 2.49 16 6 C -0.08 -1.26 10.28 71.24 0.73 -0.53 16 7 C -0.32 -6.77 5.88 -20.15 -0.12 -6.89 16 8 C 0.61 14.80 6.97 86.66 0.60 15.41 16 9 O -0.58 -19.59 17.11 -4.04 -0.07 -19.66 16 10 N -0.70 -13.16 5.55 -466.36 -2.59 -15.75 16 11 C 0.13 2.81 5.93 86.38 0.51 3.32 16 12 C 0.06 1.19 5.80 86.30 0.50 1.69 16 13 N -0.68 -20.50 6.13 -517.92 -3.17 -23.67 16 14 C 0.07 2.19 6.17 85.56 0.53 2.71 16 15 C 0.44 20.45 7.82 87.66 0.69 21.13 16 16 O -0.62 -34.74 15.78 -3.06 -0.05 -34.79 16 17 N -0.57 -29.05 5.29 -306.98 -1.62 -30.67 16 18 C -0.33 -18.98 9.68 84.04 0.81 -18.16 16 19 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 20 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 21 N -0.92 -49.12 13.05 21.66 0.28 -48.84 16 22 Si 0.99 42.88 29.55 68.60 2.03 44.90 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 24 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 26 C 0.14 2.26 7.01 42.14 0.30 2.55 16 27 C -0.10 -0.95 9.93 71.24 0.71 -0.24 16 28 H 0.10 0.05 8.14 -2.38 -0.02 0.03 16 29 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.12 0.20 7.02 -2.38 -0.02 0.18 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 34 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.08 1.25 8.01 -2.39 -0.02 1.23 16 36 H 0.41 5.41 8.46 -92.71 -0.78 4.62 16 37 H 0.06 1.63 8.14 -2.38 -0.02 1.62 16 38 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 41 H 0.35 11.13 8.43 -89.70 -0.76 10.37 16 42 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 44 H 0.40 18.93 7.90 -92.71 -0.73 18.19 16 45 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 46 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.10 0.44 7.05 -2.38 -0.02 0.43 16 48 H 0.08 1.01 7.96 -2.39 -0.02 1.00 16 Total: -1.00 -80.64 411.39 -0.86 -81.50 By element: Atomic # 1 Polarization: 37.83 SS G_CDS: -1.27 Total: 36.56 kcal Atomic # 6 Polarization: 17.25 SS G_CDS: 7.38 Total: 24.63 kcal Atomic # 7 Polarization: -124.27 SS G_CDS: -8.88 Total: -133.15 kcal Atomic # 8 Polarization: -54.33 SS G_CDS: -0.12 Total: -54.45 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -80.64 -0.86 -81.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135409106.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.995 kcal (2) G-P(sol) polarization free energy of solvation -80.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds