Wall clock time and date at job start Tue Mar 31 2020 19:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 C 1.53001 * 109.46997 * 174.99904 * 4 2 1 6 6 H 1.09005 * 109.46462 * 55.00734 * 5 4 2 7 7 C 1.53005 * 109.46980 * 174.99708 * 5 4 2 8 8 N 1.46490 * 109.47637 * 295.00250 * 5 4 2 9 9 C 1.34775 * 120.00466 * 154.99469 * 8 5 4 10 10 O 1.21282 * 119.99640 * 0.02562 * 9 8 5 11 11 C 1.50698 * 120.00220 * 179.97438 * 9 8 5 12 12 N 1.46504 * 109.47073 * 180.02562 * 11 9 8 13 13 C 1.36877 * 126.39543 * 90.00320 * 12 11 9 14 14 C 1.34672 * 106.81552 * 180.02562 * 13 12 11 15 15 N 1.34129 * 108.02223 * 359.97438 * 14 13 12 16 16 C 1.30503 * 109.25319 * 359.72616 * 15 14 13 17 17 N 1.46902 * 109.46626 * 120.00063 * 2 1 3 18 18 C 1.46904 * 110.99949 * 274.99434 * 17 2 1 19 19 C 1.50702 * 109.47107 * 180.02562 * 18 17 2 20 20 O 1.21292 * 119.99798 * 0.02562 * 19 18 17 21 21 N 1.34774 * 119.99799 * 180.02562 * 19 18 17 22 22 C 1.37101 * 119.99979 * 180.02562 * 21 19 18 23 23 H 1.08003 * 119.99611 * 359.97438 * 22 21 19 24 24 C 1.38947 * 120.00079 * 179.97438 * 22 21 19 25 25 N 1.31412 * 119.99919 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00029 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47159 * 60.00101 * 26 24 22 28 28 H 1.48501 * 109.47262 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47318 * 300.00447 * 26 24 22 30 30 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 33 33 H 1.08993 * 109.47322 * 295.00205 * 4 2 1 34 34 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 35 35 H 1.08993 * 109.47399 * 300.00897 * 7 5 4 36 36 H 1.09000 * 109.46373 * 60.00502 * 7 5 4 37 37 H 1.08994 * 109.46862 * 179.97438 * 7 5 4 38 38 H 0.97006 * 119.99783 * 335.00694 * 8 5 4 39 39 H 1.09001 * 109.47657 * 300.00638 * 11 9 8 40 40 H 1.09001 * 109.46956 * 60.00934 * 11 9 8 41 41 H 1.07997 * 126.59692 * 359.96316 * 13 12 11 42 42 H 1.08005 * 125.99204 * 180.02562 * 14 13 12 43 43 H 1.07997 * 125.65004 * 180.28913 * 16 15 14 44 44 H 1.00896 * 111.00544 * 38.95527 * 17 2 1 45 45 H 1.09002 * 109.47300 * 300.00868 * 18 17 2 46 46 H 1.09006 * 109.46967 * 60.00497 * 18 17 2 47 47 H 0.97006 * 120.00439 * 359.97438 * 21 19 18 48 48 H 0.97001 * 119.99751 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 1 3.9954 -0.9924 -0.3867 7 6 4.0852 -1.4384 -2.4924 8 7 3.9481 0.7893 -1.4924 9 6 5.1613 1.2135 -1.0866 10 8 5.9359 0.4338 -0.5738 11 6 5.5556 2.6562 -1.2710 12 7 6.9106 2.8620 -0.7534 13 6 8.0771 2.7359 -1.4584 14 6 9.0806 3.0121 -0.6037 15 7 8.5415 3.2995 0.5903 16 6 7.2417 3.2177 0.5066 17 7 2.0196 -0.6925 1.1995 18 6 2.0825 0.2226 2.3469 19 6 2.5884 -0.5215 3.5558 20 8 2.8694 -1.6983 3.4698 21 7 2.7286 0.1206 4.7324 22 6 3.1894 -0.5562 5.8321 23 1 3.4396 -1.6041 5.7555 24 6 3.3344 0.1059 7.0450 25 7 3.0304 1.3810 7.1380 26 14 3.9615 -0.8164 8.5435 27 1 5.3177 -1.3525 8.2630 28 1 4.0256 0.1088 9.7032 29 1 3.0404 -1.9388 8.8552 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.7517 -1.7715 -1.2055 34 1 1.6055 -0.2618 -2.1370 35 1 3.8001 -2.4820 -2.3594 36 1 3.6547 -1.0594 -3.4192 37 1 5.1715 -1.3611 -2.5385 38 1 3.3285 1.4128 -1.9027 39 1 5.5300 2.9072 -2.3314 40 1 4.8585 3.2955 -0.7293 41 1 8.1743 2.4658 -2.4995 42 1 10.1348 3.0043 -0.8387 43 1 6.5462 3.4010 1.3122 44 1 1.4495 -1.4979 1.4101 45 1 2.7589 1.0462 2.1182 46 1 1.0871 0.6164 2.5526 47 1 2.5042 1.0618 4.8011 48 1 3.1313 1.8431 7.9849 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146780662.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:22 Heat of formation + Delta-G solvation = -8.664298 kcal Electronic energy + Delta-G solvation = -29491.938308 eV Core-core repulsion = 25390.090134 eV Total energy + Delta-G solvation = -4101.848174 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.09275 -39.94592 -38.47229 -37.32927 -35.24411 -34.07476 -33.86619 -31.89128 -31.19708 -30.44329 -29.48736 -27.77957 -26.96630 -26.22712 -23.93565 -22.39524 -21.36932 -21.21760 -20.69855 -20.52166 -19.25882 -17.94845 -17.78255 -17.57166 -16.29370 -15.88272 -15.60653 -15.43207 -14.90262 -14.77417 -14.59530 -14.26194 -13.99067 -13.96728 -13.83710 -13.72597 -13.55232 -13.25240 -13.14965 -12.89135 -12.73037 -12.36086 -12.32658 -12.16808 -12.03742 -11.55878 -11.46991 -11.21654 -10.99857 -10.93060 -10.84177 -10.41475 -10.40857 -10.18164 -9.97653 -9.53061 -9.46828 -9.22551 -8.50491 -8.45528 -8.04494 -7.92897 -6.38786 -3.79342 1.91314 2.37281 2.51866 3.08300 3.23598 3.24897 3.29097 3.33884 3.93064 4.09816 4.32575 4.32586 4.36080 4.53879 4.60106 4.75101 4.80198 4.84347 5.03170 5.11914 5.22668 5.25912 5.28332 5.37978 5.39736 5.43132 5.57537 5.59427 5.64448 5.72228 5.73276 5.87471 5.99072 6.00624 6.09051 6.16423 6.23352 6.27543 6.39540 6.70286 7.05919 7.20829 7.28264 7.58290 7.64173 8.01245 8.08966 8.09318 8.63924 9.21018 9.56746 10.08293 10.78963 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007666 B = 0.003504 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3651.722493 B = 7988.650402 C =10740.220237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.082 3.918 3 H 0.075 0.925 4 C -0.112 4.112 5 C 0.144 3.856 6 H 0.111 0.889 7 C -0.162 4.162 8 N -0.719 5.719 9 C 0.492 3.508 10 O -0.507 6.507 11 C 0.086 3.914 12 N -0.447 5.447 13 C -0.052 4.052 14 C -0.029 4.029 15 N -0.494 5.494 16 C 0.200 3.800 17 N -0.660 5.660 18 C 0.054 3.946 19 C 0.440 3.560 20 O -0.582 6.582 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.102 0.898 24 C 0.023 3.977 25 N -0.903 5.903 26 Si 0.930 3.070 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.274 1.274 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.395 0.605 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.170 0.830 42 H 0.168 0.832 43 H 0.204 0.796 44 H 0.350 0.650 45 H 0.080 0.920 46 H 0.042 0.958 47 H 0.391 0.609 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.056 6.167 -23.953 24.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.029 4.029 3 H 0.093 0.907 4 C -0.151 4.151 5 C 0.041 3.959 6 H 0.129 0.871 7 C -0.220 4.220 8 N -0.372 5.372 9 C 0.275 3.725 10 O -0.381 6.381 11 C -0.041 4.041 12 N -0.130 5.130 13 C -0.184 4.184 14 C -0.176 4.176 15 N -0.211 5.211 16 C -0.083 4.083 17 N -0.292 5.292 18 C -0.078 4.078 19 C 0.225 3.775 20 O -0.466 6.466 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.178 4.178 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.198 1.198 28 H -0.209 1.209 29 H -0.200 1.200 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.229 0.771 39 H 0.136 0.864 40 H 0.141 0.859 41 H 0.187 0.813 42 H 0.185 0.815 43 H 0.221 0.779 44 H 0.170 0.830 45 H 0.098 0.902 46 H 0.060 0.940 47 H 0.224 0.776 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.282 5.170 -22.944 23.555 hybrid contribution -1.698 0.375 0.090 1.742 sum -2.981 5.545 -22.854 23.706 Atomic orbital electron populations 1.22544 0.97445 1.02336 1.02045 1.21594 0.92155 0.98007 0.91160 0.90718 1.21872 0.94089 1.02272 0.96820 1.21042 0.94693 0.79731 1.00451 0.87077 1.22174 1.01716 1.00350 0.97788 1.45994 1.16258 1.11993 1.62950 1.20668 0.82661 0.89990 0.79180 1.90855 1.50461 1.55651 1.41103 1.21677 0.83504 0.95954 1.02969 1.44992 1.05699 1.51335 1.10966 1.22592 0.85133 1.11071 0.99607 1.22253 0.99261 1.06591 0.89506 1.70318 1.05940 1.20745 1.24102 1.25064 0.93734 1.02843 0.86636 1.60163 1.57514 1.09049 1.02521 1.21649 0.99524 0.95630 0.91045 1.19798 0.85236 0.88279 0.84150 1.90527 1.55220 1.16306 1.84554 1.41843 1.57764 1.12385 1.07968 1.19651 1.40033 0.96447 0.86768 0.88018 1.25239 0.97576 0.95762 0.99229 1.69598 1.48694 1.08846 1.27254 0.85930 0.79548 0.78808 0.80029 1.19811 1.20950 1.19953 0.92340 0.92266 0.92487 0.90047 0.91556 0.91481 0.93030 0.92409 0.77124 0.86374 0.85935 0.81278 0.81510 0.77912 0.83022 0.90154 0.94050 0.77577 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 9.16 37.16 0.34 -1.27 16 2 C 0.08 0.81 2.53 -67.71 -0.17 0.64 16 3 H 0.07 0.70 7.28 -51.93 -0.38 0.33 16 4 C -0.11 -0.93 4.43 -26.73 -0.12 -1.05 16 5 C 0.14 1.49 2.52 -67.93 -0.17 1.32 16 6 H 0.11 1.72 7.06 -51.93 -0.37 1.35 16 7 C -0.16 -1.51 9.48 37.16 0.35 -1.16 16 8 N -0.72 -5.82 4.45 -53.81 -0.24 -6.06 16 9 C 0.49 5.32 7.86 -10.99 -0.09 5.23 16 10 O -0.51 -8.61 16.09 5.56 0.09 -8.52 16 11 C 0.09 0.61 6.63 -5.19 -0.03 0.58 16 12 N -0.45 -4.96 2.24 -119.87 -0.27 -5.23 16 13 C -0.05 -0.58 11.58 -16.56 -0.19 -0.77 16 14 C -0.03 -0.38 11.87 -17.81 -0.21 -0.59 16 15 N -0.49 -7.77 11.25 -14.66 -0.16 -7.93 16 16 C 0.20 2.70 12.56 -90.37 -1.14 1.57 16 17 N -0.66 -9.80 5.24 -107.98 -0.57 -10.37 16 18 C 0.05 0.93 5.97 -4.97 -0.03 0.90 16 19 C 0.44 10.47 7.82 -10.99 -0.09 10.38 16 20 O -0.58 -16.03 15.78 5.55 0.09 -15.95 16 21 N -0.56 -14.46 5.29 -10.96 -0.06 -14.52 16 22 C -0.30 -8.53 9.68 -14.93 -0.14 -8.67 16 23 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 24 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 25 N -0.90 -24.86 13.05 55.50 0.72 -24.14 16 26 Si 0.93 21.59 29.55 -169.99 -5.02 16.57 16 27 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 32 H 0.06 0.56 7.45 -51.93 -0.39 0.17 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.40 1.73 8.60 -40.82 -0.35 1.38 16 39 H 0.12 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.17 1.32 8.06 -52.49 -0.42 0.89 16 42 H 0.17 1.74 8.06 -52.48 -0.42 1.32 16 43 H 0.20 2.31 8.06 -52.49 -0.42 1.89 16 44 H 0.35 5.50 8.17 -39.29 -0.32 5.18 16 45 H 0.08 1.30 8.06 -51.93 -0.42 0.88 16 46 H 0.04 0.64 7.44 -51.93 -0.39 0.25 16 47 H 0.39 9.57 7.90 -40.82 -0.32 9.24 16 48 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 406.72 15.07 6.13 6.13 Total: -1.00 -38.47 406.72 -8.59 -47.06 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: -7.51 Total: 15.30 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -1.78 Total: 7.65 kcal Atomic # 7 Polarization: -67.67 SS G_CDS: -0.57 Total: -68.24 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: 0.18 Total: -24.46 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -38.47 -8.59 -47.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146780662.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.395 kcal (2) G-P(sol) polarization free energy of solvation -38.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds