Wall clock time and date at job start Tue Mar 31 2020 19:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 C 1.53001 * 109.46997 * 174.99904 * 4 2 1 6 6 H 1.09005 * 109.46462 * 55.00734 * 5 4 2 7 7 C 1.53005 * 109.46980 * 174.99708 * 5 4 2 8 8 N 1.46490 * 109.47637 * 295.00250 * 5 4 2 9 9 C 1.34775 * 120.00466 * 154.99469 * 8 5 4 10 10 O 1.21282 * 119.99640 * 0.02562 * 9 8 5 11 11 C 1.50698 * 120.00220 * 179.97438 * 9 8 5 12 12 N 1.46504 * 109.47073 * 180.02562 * 11 9 8 13 13 C 1.36877 * 126.39543 * 90.00320 * 12 11 9 14 14 C 1.34672 * 106.81552 * 180.02562 * 13 12 11 15 15 N 1.34129 * 108.02223 * 359.97438 * 14 13 12 16 16 C 1.30503 * 109.25319 * 359.72616 * 15 14 13 17 17 N 1.46902 * 109.46626 * 120.00063 * 2 1 3 18 18 C 1.46904 * 110.99949 * 274.99434 * 17 2 1 19 19 C 1.50702 * 109.47107 * 180.02562 * 18 17 2 20 20 O 1.21292 * 119.99798 * 0.02562 * 19 18 17 21 21 N 1.34774 * 119.99799 * 180.02562 * 19 18 17 22 22 C 1.37101 * 119.99979 * 180.02562 * 21 19 18 23 23 H 1.08003 * 119.99611 * 359.97438 * 22 21 19 24 24 C 1.38947 * 120.00079 * 179.97438 * 22 21 19 25 25 N 1.31412 * 119.99919 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00029 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47159 * 60.00101 * 26 24 22 28 28 H 1.48501 * 109.47262 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47318 * 300.00447 * 26 24 22 30 30 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 33 33 H 1.08993 * 109.47322 * 295.00205 * 4 2 1 34 34 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 35 35 H 1.08993 * 109.47399 * 300.00897 * 7 5 4 36 36 H 1.09000 * 109.46373 * 60.00502 * 7 5 4 37 37 H 1.08994 * 109.46862 * 179.97438 * 7 5 4 38 38 H 0.97006 * 119.99783 * 335.00694 * 8 5 4 39 39 H 1.09001 * 109.47657 * 300.00638 * 11 9 8 40 40 H 1.09001 * 109.46956 * 60.00934 * 11 9 8 41 41 H 1.07997 * 126.59692 * 359.96316 * 13 12 11 42 42 H 1.08005 * 125.99204 * 180.02562 * 14 13 12 43 43 H 1.07997 * 125.65004 * 180.28913 * 16 15 14 44 44 H 1.00896 * 111.00544 * 38.95527 * 17 2 1 45 45 H 1.09002 * 109.47300 * 300.00868 * 18 17 2 46 46 H 1.09006 * 109.46967 * 60.00497 * 18 17 2 47 47 H 0.97006 * 120.00439 * 359.97438 * 21 19 18 48 48 H 0.97001 * 119.99751 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 1 3.9954 -0.9924 -0.3867 7 6 4.0852 -1.4384 -2.4924 8 7 3.9481 0.7893 -1.4924 9 6 5.1613 1.2135 -1.0866 10 8 5.9359 0.4338 -0.5738 11 6 5.5556 2.6562 -1.2710 12 7 6.9106 2.8620 -0.7534 13 6 8.0771 2.7359 -1.4584 14 6 9.0806 3.0121 -0.6037 15 7 8.5415 3.2995 0.5903 16 6 7.2417 3.2177 0.5066 17 7 2.0196 -0.6925 1.1995 18 6 2.0825 0.2226 2.3469 19 6 2.5884 -0.5215 3.5558 20 8 2.8694 -1.6983 3.4698 21 7 2.7286 0.1206 4.7324 22 6 3.1894 -0.5562 5.8321 23 1 3.4396 -1.6041 5.7555 24 6 3.3344 0.1059 7.0450 25 7 3.0304 1.3810 7.1380 26 14 3.9615 -0.8164 8.5435 27 1 5.3177 -1.3525 8.2630 28 1 4.0256 0.1088 9.7032 29 1 3.0404 -1.9388 8.8552 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.7517 -1.7715 -1.2055 34 1 1.6055 -0.2618 -2.1370 35 1 3.8001 -2.4820 -2.3594 36 1 3.6547 -1.0594 -3.4192 37 1 5.1715 -1.3611 -2.5385 38 1 3.3285 1.4128 -1.9027 39 1 5.5300 2.9072 -2.3314 40 1 4.8585 3.2955 -0.7293 41 1 8.1743 2.4658 -2.4995 42 1 10.1348 3.0043 -0.8387 43 1 6.5462 3.4010 1.3122 44 1 1.4495 -1.4979 1.4101 45 1 2.7589 1.0462 2.1182 46 1 1.0871 0.6164 2.5526 47 1 2.5042 1.0618 4.8011 48 1 3.1313 1.8431 7.9849 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146780662.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:22 Heat of formation + Delta-G solvation = -38.225432 kcal Electronic energy + Delta-G solvation = -29493.220175 eV Core-core repulsion = 25390.090134 eV Total energy + Delta-G solvation = -4103.130041 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.97558 -40.82369 -40.18433 -38.46335 -36.33336 -35.83596 -34.93392 -33.33434 -32.77216 -31.44947 -30.38858 -28.52016 -27.96619 -27.60906 -25.68200 -23.23423 -22.28686 -22.07418 -21.55796 -21.36822 -21.08666 -19.94233 -18.68555 -18.34851 -17.77527 -16.94093 -16.83565 -16.45242 -16.33520 -16.05890 -15.82518 -15.54876 -15.24964 -15.03785 -14.92386 -14.76439 -14.53890 -14.35140 -14.07245 -14.00435 -13.59711 -13.55204 -13.43667 -13.19592 -13.06821 -12.97890 -12.82516 -12.65354 -12.45971 -12.15254 -12.04434 -11.71084 -11.66245 -11.52416 -11.37830 -10.96116 -10.43296 -10.36591 -10.03764 -10.03185 -9.41538 -9.21323 -8.48819 -5.97317 1.03787 1.36934 1.39183 1.49719 1.58616 1.78800 2.04016 2.24189 2.27409 2.37669 2.96579 3.18572 3.54891 3.67834 3.78997 3.85564 3.88560 4.02882 4.09293 4.18300 4.21522 4.33091 4.42980 4.46189 4.54127 4.57719 4.58530 4.62719 4.76398 4.78641 4.86293 4.92140 5.04103 5.18218 5.27197 5.29071 5.33667 5.38365 5.41073 5.61468 5.83993 5.91754 6.17299 6.20386 6.47752 6.58486 6.60798 7.10919 7.15296 7.31761 7.54377 8.10506 8.68371 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007666 B = 0.003504 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3651.722493 B = 7988.650402 C =10740.220237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.081 3.919 3 H 0.087 0.913 4 C -0.102 4.102 5 C 0.147 3.853 6 H 0.053 0.947 7 C -0.155 4.155 8 N -0.698 5.698 9 C 0.488 3.512 10 O -0.580 6.580 11 C 0.088 3.912 12 N -0.444 5.444 13 C -0.039 4.039 14 C -0.064 4.064 15 N -0.542 5.542 16 C 0.177 3.823 17 N -0.678 5.678 18 C 0.073 3.927 19 C 0.434 3.566 20 O -0.625 6.625 21 N -0.573 5.573 22 C -0.337 4.337 23 H 0.075 0.925 24 C -0.010 4.010 25 N -0.918 5.918 26 Si 0.989 3.011 27 H -0.277 1.277 28 H -0.267 1.267 29 H -0.269 1.269 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.031 0.969 38 H 0.419 0.581 39 H 0.166 0.834 40 H 0.156 0.844 41 H 0.205 0.795 42 H 0.180 0.820 43 H 0.213 0.787 44 H 0.342 0.658 45 H 0.093 0.907 46 H 0.066 0.934 47 H 0.396 0.604 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.119 7.784 -26.554 28.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.028 4.028 3 H 0.105 0.895 4 C -0.140 4.140 5 C 0.042 3.958 6 H 0.071 0.929 7 C -0.213 4.213 8 N -0.352 5.352 9 C 0.274 3.726 10 O -0.459 6.459 11 C -0.037 4.037 12 N -0.126 5.126 13 C -0.172 4.172 14 C -0.210 4.210 15 N -0.261 5.261 16 C -0.106 4.106 17 N -0.310 5.310 18 C -0.060 4.060 19 C 0.222 3.778 20 O -0.512 6.512 21 N -0.210 5.210 22 C -0.466 4.466 23 H 0.093 0.907 24 C -0.210 4.210 25 N -0.559 5.559 26 Si 0.813 3.187 27 H -0.202 1.202 28 H -0.191 1.191 29 H -0.194 1.194 30 H 0.107 0.893 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.127 0.873 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.050 0.950 38 H 0.257 0.743 39 H 0.183 0.817 40 H 0.174 0.826 41 H 0.222 0.778 42 H 0.197 0.803 43 H 0.229 0.771 44 H 0.161 0.839 45 H 0.111 0.889 46 H 0.084 0.916 47 H 0.230 0.770 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.425 6.847 -25.599 26.719 hybrid contribution -1.087 -0.172 0.805 1.363 sum -4.511 6.675 -24.794 26.070 Atomic orbital electron populations 1.22467 0.95874 1.02414 1.02961 1.21759 0.93354 0.98254 0.89440 0.89512 1.21844 0.92293 1.02350 0.97547 1.20810 0.95874 0.80836 0.98264 0.92850 1.22095 1.00111 1.00359 0.98732 1.45787 1.15911 1.11625 1.61841 1.21359 0.82447 0.91065 0.77778 1.90843 1.52667 1.57856 1.44503 1.22080 0.81978 0.93520 1.06167 1.45171 1.07286 1.50043 1.10137 1.23144 0.84618 1.08700 1.00726 1.22679 1.00732 1.08157 0.89474 1.70223 1.07510 1.22370 1.25975 1.25268 0.93526 1.03678 0.88087 1.60180 1.58689 1.09041 1.03109 1.21448 1.00520 0.95162 0.88830 1.21034 0.83409 0.88090 0.85288 1.90492 1.56648 1.18579 1.85470 1.41912 1.58316 1.12537 1.08223 1.19601 1.42422 0.95915 0.88700 0.90694 1.25985 0.97114 0.96625 1.01256 1.69650 1.48492 1.09556 1.28197 0.85047 0.78603 0.78020 0.77032 1.20216 1.19133 1.19446 0.89348 0.92675 0.93581 0.90586 0.87292 0.91749 0.89857 0.95001 0.74270 0.81657 0.82638 0.77782 0.80255 0.77052 0.83935 0.88856 0.91592 0.77021 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 9.16 71.98 0.66 -1.83 16 2 C 0.08 1.40 2.53 44.92 0.11 1.51 16 3 H 0.09 1.29 7.28 -2.39 -0.02 1.28 16 4 C -0.10 -1.38 4.43 30.59 0.14 -1.24 16 5 C 0.15 2.82 2.52 45.00 0.11 2.94 16 6 H 0.05 1.71 7.06 -2.38 -0.02 1.70 16 7 C -0.15 -2.68 9.48 71.98 0.68 -1.99 16 8 N -0.70 -9.31 4.45 -442.54 -1.97 -11.28 16 9 C 0.49 9.75 7.86 87.66 0.69 10.44 16 10 O -0.58 -20.19 16.09 -3.04 -0.05 -20.23 16 11 C 0.09 0.94 6.63 85.63 0.57 1.51 16 12 N -0.44 -9.22 2.24 -533.14 -1.19 -10.42 16 13 C -0.04 -0.81 11.58 83.09 0.96 0.15 16 14 C -0.06 -1.70 11.87 83.52 0.99 -0.71 16 15 N -0.54 -17.72 11.25 -200.30 -2.25 -19.98 16 16 C 0.18 4.86 12.56 180.26 2.26 7.12 16 17 N -0.68 -19.82 5.24 -495.54 -2.60 -22.41 16 18 C 0.07 2.45 5.97 85.56 0.51 2.96 16 19 C 0.43 21.27 7.82 87.66 0.69 21.95 16 20 O -0.63 -36.04 15.78 -3.07 -0.05 -36.09 16 21 N -0.57 -30.28 5.29 -306.98 -1.62 -31.90 16 22 C -0.34 -19.86 9.68 84.04 0.81 -19.04 16 23 H 0.08 4.74 7.16 -2.91 -0.02 4.71 16 24 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 25 N -0.92 -50.58 13.05 21.66 0.28 -50.30 16 26 Si 0.99 44.58 29.55 68.60 2.03 46.60 16 27 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 28 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 29 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 30 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.05 0.83 8.13 -2.39 -0.02 0.81 16 32 H 0.05 0.76 7.45 -2.39 -0.02 0.74 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.42 1.58 8.60 -92.70 -0.80 0.78 16 39 H 0.17 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.16 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.21 2.57 8.06 -2.91 -0.02 2.55 16 42 H 0.18 3.88 8.06 -2.91 -0.02 3.85 16 43 H 0.21 4.98 8.06 -2.91 -0.02 4.95 16 44 H 0.34 10.83 8.17 -89.70 -0.73 10.10 16 45 H 0.09 2.91 8.06 -2.39 -0.02 2.89 16 46 H 0.07 1.91 7.44 -2.38 -0.02 1.89 16 47 H 0.40 19.72 7.90 -92.70 -0.73 18.99 16 48 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -91.89 406.72 0.96 -90.93 By element: Atomic # 1 Polarization: 42.65 SS G_CDS: -1.27 Total: 41.38 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: 9.66 Total: 23.69 kcal Atomic # 7 Polarization: -136.93 SS G_CDS: -9.35 Total: -146.28 kcal Atomic # 8 Polarization: -56.23 SS G_CDS: -0.10 Total: -56.33 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -91.89 0.96 -90.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146780662.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.704 kcal (2) G-P(sol) polarization free energy of solvation -91.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds