Wall clock time and date at job start Tue Mar 31 2020 20:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47153 * 2 1 4 4 C 1.35307 * 125.87064 * 125.32113 * 3 2 1 5 5 C 1.35349 * 106.17680 * 180.11904 * 4 3 2 6 6 C 1.50706 * 126.75400 * 179.85711 * 5 4 3 7 7 C 1.50698 * 109.47067 * 124.70819 * 6 5 4 8 8 O 1.21280 * 120.00316 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99778 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00025 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47109 * 180.02562 * 10 9 7 12 12 H 1.09010 * 109.46805 * 304.99133 * 11 10 9 13 13 C 1.54805 * 109.46633 * 185.00332 * 11 10 9 14 14 N 1.45131 * 109.53947 * 172.10845 * 13 11 10 15 15 C 1.36941 * 118.75446 * 269.28781 * 14 13 11 16 16 H 1.07994 * 119.99792 * 139.40552 * 15 14 13 17 17 C 1.38809 * 120.00027 * 319.40320 * 15 14 13 18 18 N 1.31616 * 120.00354 * 156.47599 * 17 15 14 19 19 Si 1.86805 * 120.00084 * 336.47815 * 17 15 14 20 20 H 1.48496 * 109.47448 * 95.52255 * 19 17 15 21 21 H 1.48498 * 109.47338 * 215.52613 * 19 17 15 22 22 H 1.48499 * 109.46988 * 335.52254 * 19 17 15 23 23 C 1.47506 * 122.48418 * 89.28184 * 14 13 11 24 24 C 1.53565 * 111.03049 * 318.37519 * 23 14 13 25 25 C 1.51541 * 109.58186 * 320.02420 * 24 23 14 26 26 O 1.38013 * 109.47541 * 64.98738 * 11 10 9 27 27 N 1.33770 * 106.49771 * 359.58975 * 5 4 3 28 28 N 1.28644 * 108.88359 * 0.26717 * 27 5 4 29 29 H 1.09002 * 109.47077 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47311 * 300.00668 * 1 2 3 31 31 H 1.08997 * 109.47233 * 59.99945 * 1 2 3 32 32 H 1.08995 * 109.47518 * 239.99842 * 2 1 3 33 33 H 1.09006 * 109.47004 * 119.99468 * 2 1 3 34 34 H 1.07997 * 126.91529 * 359.97428 * 4 3 2 35 35 H 1.08999 * 109.46674 * 4.70717 * 6 5 4 36 36 H 1.09003 * 109.46689 * 244.71089 * 6 5 4 37 37 H 0.96996 * 119.99647 * 359.97438 * 9 7 6 38 38 H 1.08995 * 109.47558 * 59.99450 * 10 9 7 39 39 H 1.09007 * 109.46422 * 299.99396 * 10 9 7 40 40 H 1.08999 * 109.45603 * 292.12137 * 13 11 10 41 41 H 1.08995 * 109.46662 * 52.08358 * 13 11 10 42 42 H 0.96998 * 120.00657 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.16248 * 197.97615 * 23 14 13 44 44 H 1.08994 * 109.12119 * 78.75072 * 23 14 13 45 45 H 1.09001 * 109.45777 * 199.98760 * 24 23 14 46 46 H 1.09003 * 109.44973 * 80.05439 * 24 23 14 47 47 H 1.08997 * 109.59034 * 331.61199 * 25 24 23 48 48 H 1.08998 * 109.58560 * 211.18123 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8803 1.9174 0.8946 5 6 3.0544 3.2075 0.5240 6 6 3.9239 4.2322 1.2060 7 6 4.8952 4.8102 0.2092 8 8 4.8823 4.4281 -0.9417 9 7 5.7781 5.7518 0.5969 10 6 6.7220 6.3141 -0.3722 11 6 7.6057 7.3534 0.3205 12 1 6.9766 8.1035 0.8001 13 6 8.5162 8.0376 -0.7279 14 7 9.2184 9.1475 -0.1105 15 6 8.6447 10.3905 -0.1438 16 1 8.6927 11.0308 0.7245 17 6 8.0013 10.8274 -1.2936 18 7 7.0794 11.7635 -1.2166 19 14 8.4440 10.0866 -2.9504 20 1 7.4930 8.9928 -3.2736 21 1 8.3664 11.1358 -3.9984 22 1 9.8246 9.5423 -2.8962 23 6 10.5268 8.9872 0.5516 24 6 10.5664 7.7011 1.3897 25 6 9.2395 7.5151 2.0977 26 8 8.3871 6.7315 1.2730 27 7 2.3074 3.3925 -0.5702 28 7 1.7060 2.2915 -0.8548 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.3358 1.4174 1.7365 35 1 4.4754 3.7581 2.0179 36 1 3.2986 5.0293 1.6084 37 1 5.7882 6.0576 1.5173 38 1 6.1702 6.7887 -1.1836 39 1 7.3469 5.5171 -0.7752 40 1 9.2397 7.3157 -1.1067 41 1 7.9066 8.4072 -1.5525 42 1 6.6295 12.0686 -2.0199 43 1 10.7061 9.8437 1.2016 44 1 11.3080 8.9442 -0.2072 45 1 11.3648 7.7734 2.1282 46 1 10.7523 6.8481 0.7370 47 1 8.7814 8.4878 2.2768 48 1 9.4003 7.0042 3.0469 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150012484.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:43 Heat of formation + Delta-G solvation = 45.889962 kcal Electronic energy + Delta-G solvation = -29369.498478 eV Core-core repulsion = 25270.015954 eV Total energy + Delta-G solvation = -4099.482523 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.36797 -39.60475 -38.79395 -35.81629 -35.31258 -34.56809 -32.89289 -32.48205 -31.46460 -31.10534 -29.24518 -27.95380 -26.00913 -25.06663 -24.96150 -22.77564 -22.05746 -21.43390 -21.03638 -20.04544 -19.63784 -17.69887 -17.03444 -16.97825 -16.46568 -16.28507 -15.88812 -15.74922 -15.35291 -14.85851 -14.78756 -14.54558 -14.43204 -13.85668 -13.73484 -13.31495 -13.27032 -12.97950 -12.95802 -12.66246 -12.50963 -12.42208 -12.08366 -11.99713 -11.96059 -11.60974 -11.56194 -11.13532 -10.81713 -10.77754 -10.47699 -10.40192 -10.16725 -10.04881 -9.78840 -9.72985 -9.65987 -9.24474 -8.94434 -8.76007 -8.51448 -6.83148 -6.06795 -3.50954 1.44893 2.11962 2.45267 2.88519 3.31659 3.45340 3.46737 3.52160 3.97356 4.12646 4.21045 4.32601 4.48567 4.55920 4.59832 4.80207 4.88266 5.01963 5.05184 5.11375 5.20564 5.24962 5.36965 5.42571 5.50257 5.53602 5.62911 5.71557 5.73952 5.88655 5.98316 6.01565 6.03701 6.08947 6.23773 6.36642 6.41410 6.41488 6.49158 6.61836 6.72002 6.76848 6.80672 7.75737 8.02223 8.13347 8.34262 8.46452 8.48478 8.95725 9.65084 10.03428 11.08041 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017760 B = 0.002375 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.202931 B =11788.434113 C =12766.543916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.113 3.887 3 N -0.296 5.296 4 C -0.049 4.049 5 C -0.003 4.003 6 C -0.054 4.054 7 C 0.511 3.489 8 O -0.528 6.528 9 N -0.720 5.720 10 C 0.133 3.867 11 C 0.072 3.928 12 H 0.064 0.936 13 C 0.118 3.882 14 N -0.603 5.603 15 C -0.283 4.283 16 H 0.077 0.923 17 C 0.043 3.957 18 N -0.893 5.893 19 Si 0.871 3.129 20 H -0.282 1.282 21 H -0.299 1.299 22 H -0.269 1.269 23 C 0.144 3.856 24 C -0.168 4.168 25 C 0.086 3.914 26 O -0.394 6.394 27 N -0.237 5.237 28 N -0.087 5.087 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.189 0.811 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.402 0.598 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.045 0.955 41 H 0.062 0.938 42 H 0.265 0.735 43 H 0.059 0.941 44 H 0.020 0.980 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.026 -23.193 10.700 26.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.008 4.008 3 N -0.090 5.090 4 C -0.200 4.200 5 C -0.141 4.141 6 C -0.096 4.096 7 C 0.296 3.704 8 O -0.404 6.404 9 N -0.372 5.372 10 C 0.009 3.991 11 C 0.010 3.990 12 H 0.082 0.918 13 C -0.009 4.009 14 N -0.326 5.326 15 C -0.411 4.411 16 H 0.094 0.906 17 C -0.159 4.159 18 N -0.532 5.532 19 Si 0.700 3.300 20 H -0.209 1.209 21 H -0.226 1.226 22 H -0.194 1.194 23 C 0.019 3.981 24 C -0.207 4.207 25 C 0.010 3.990 26 O -0.314 6.314 27 N -0.104 5.104 28 N -0.066 5.066 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.122 0.878 34 H 0.206 0.794 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.236 0.764 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.038 0.962 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.955 -23.219 8.505 25.976 hybrid contribution 0.936 -0.232 0.341 1.023 sum -7.019 -23.451 8.846 26.028 Atomic orbital electron populations 1.22078 0.92694 1.03622 1.04136 1.22065 0.96923 0.76682 1.05153 1.47429 1.30650 1.12012 1.18878 1.23275 1.00902 0.95379 1.00410 1.21246 1.02306 0.93910 0.96684 1.19886 0.95482 0.97130 0.97097 1.20283 0.81237 0.79694 0.89194 1.90749 1.70188 1.60011 1.19429 1.45903 1.35882 1.41346 1.14099 1.21402 0.90026 0.96222 0.91493 1.22504 0.92009 0.93118 0.91337 0.91814 1.21832 0.94422 0.89974 0.94703 1.44013 1.17232 1.04924 1.66454 1.18772 1.32234 0.92454 0.97679 0.90586 1.25525 0.96807 0.95789 0.97772 1.69873 1.22796 1.31541 1.29028 0.87011 0.79699 0.77987 0.85261 1.20923 1.22622 1.19401 1.21254 0.87384 0.95103 0.94360 1.22564 0.98119 1.00039 0.99958 1.21993 0.89513 0.95997 0.91497 1.86079 1.57348 1.38519 1.49424 1.75154 1.07578 1.15611 1.12012 1.78313 1.20906 0.92898 1.14498 0.89951 0.91731 0.90573 0.88367 0.87760 0.79371 0.87207 0.87086 0.76365 0.90170 0.91245 0.93689 0.91994 0.92525 0.92287 0.96195 0.91605 0.91709 0.91886 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.75 10.04 37.16 0.37 -0.37 16 2 C 0.11 0.55 7.17 -4.04 -0.03 0.52 16 3 N -0.30 -2.95 3.44 -61.26 -0.21 -3.16 16 4 C -0.05 -0.45 11.49 -17.05 -0.20 -0.65 16 5 C 0.00 -0.03 6.00 -82.77 -0.50 -0.53 16 6 C -0.05 -0.56 6.28 -29.03 -0.18 -0.75 16 7 C 0.51 7.72 7.82 -10.99 -0.09 7.63 16 8 O -0.53 -10.53 15.60 5.56 0.09 -10.44 16 9 N -0.72 -10.36 5.49 -60.30 -0.33 -10.69 16 10 C 0.13 2.29 5.34 -4.04 -0.02 2.27 16 11 C 0.07 1.33 2.68 -25.78 -0.07 1.26 16 12 H 0.06 1.30 8.14 -51.92 -0.42 0.87 16 13 C 0.12 2.55 3.93 -3.83 -0.02 2.54 16 14 N -0.60 -13.83 1.75 -172.03 -0.30 -14.13 16 15 C -0.28 -7.63 9.69 -15.06 -0.15 -7.77 16 16 H 0.08 2.21 8.06 -52.49 -0.42 1.78 16 17 C 0.04 1.21 5.22 -17.43 -0.09 1.12 16 18 N -0.89 -26.72 13.97 55.49 0.78 -25.94 16 19 Si 0.87 22.21 25.27 -169.99 -4.29 17.91 16 20 H -0.28 -7.05 6.70 56.52 0.38 -6.67 16 21 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 22 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.14 2.77 6.30 -3.20 -0.02 2.75 16 24 C -0.17 -2.62 5.78 -27.18 -0.16 -2.77 16 25 C 0.09 1.35 6.37 36.42 0.23 1.58 16 26 O -0.39 -6.67 9.38 -26.53 -0.25 -6.92 16 27 N -0.24 -3.90 11.82 33.29 0.39 -3.51 16 28 N -0.09 -1.25 12.91 60.35 0.78 -0.47 16 29 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 32 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 0.18 8.07 -51.93 -0.42 -0.24 16 34 H 0.19 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.11 0.71 8.12 -51.93 -0.42 0.29 16 36 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.40 4.74 8.46 -40.82 -0.35 4.40 16 38 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 41 H 0.06 1.48 3.65 -51.93 -0.19 1.29 16 42 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.06 1.12 7.91 -51.93 -0.41 0.71 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.06 1.04 8.01 -51.93 -0.42 0.62 16 47 H 0.06 1.11 7.40 -51.93 -0.38 0.73 16 48 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 388.35 15.07 5.85 5.85 Total: -1.00 -37.34 388.35 -6.06 -43.40 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -7.66 Total: 1.27 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -0.90 Total: 6.84 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: 1.11 Total: -57.90 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.16 Total: -17.37 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.29 Total: 17.91 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.34 -6.06 -43.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150012484.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.290 kcal (2) G-P(sol) polarization free energy of solvation -37.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds