Wall clock time and date at job start Tue Mar 31 2020 20:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47153 * 2 1 4 4 C 1.35307 * 125.87064 * 125.32113 * 3 2 1 5 5 C 1.35349 * 106.17680 * 180.11904 * 4 3 2 6 6 C 1.50706 * 126.75400 * 179.85711 * 5 4 3 7 7 C 1.50698 * 109.47067 * 124.70819 * 6 5 4 8 8 O 1.21280 * 120.00316 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99778 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00025 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47109 * 180.02562 * 10 9 7 12 12 H 1.09010 * 109.46805 * 304.99133 * 11 10 9 13 13 C 1.54805 * 109.46633 * 185.00332 * 11 10 9 14 14 N 1.45131 * 109.53947 * 172.10845 * 13 11 10 15 15 C 1.36941 * 118.75446 * 269.28781 * 14 13 11 16 16 H 1.07994 * 119.99792 * 139.40552 * 15 14 13 17 17 C 1.38809 * 120.00027 * 319.40320 * 15 14 13 18 18 N 1.31616 * 120.00354 * 156.47599 * 17 15 14 19 19 Si 1.86805 * 120.00084 * 336.47815 * 17 15 14 20 20 H 1.48496 * 109.47448 * 95.52255 * 19 17 15 21 21 H 1.48498 * 109.47338 * 215.52613 * 19 17 15 22 22 H 1.48499 * 109.46988 * 335.52254 * 19 17 15 23 23 C 1.47506 * 122.48418 * 89.28184 * 14 13 11 24 24 C 1.53565 * 111.03049 * 318.37519 * 23 14 13 25 25 C 1.51541 * 109.58186 * 320.02420 * 24 23 14 26 26 O 1.38013 * 109.47541 * 64.98738 * 11 10 9 27 27 N 1.33770 * 106.49771 * 359.58975 * 5 4 3 28 28 N 1.28644 * 108.88359 * 0.26717 * 27 5 4 29 29 H 1.09002 * 109.47077 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47311 * 300.00668 * 1 2 3 31 31 H 1.08997 * 109.47233 * 59.99945 * 1 2 3 32 32 H 1.08995 * 109.47518 * 239.99842 * 2 1 3 33 33 H 1.09006 * 109.47004 * 119.99468 * 2 1 3 34 34 H 1.07997 * 126.91529 * 359.97428 * 4 3 2 35 35 H 1.08999 * 109.46674 * 4.70717 * 6 5 4 36 36 H 1.09003 * 109.46689 * 244.71089 * 6 5 4 37 37 H 0.96996 * 119.99647 * 359.97438 * 9 7 6 38 38 H 1.08995 * 109.47558 * 59.99450 * 10 9 7 39 39 H 1.09007 * 109.46422 * 299.99396 * 10 9 7 40 40 H 1.08999 * 109.45603 * 292.12137 * 13 11 10 41 41 H 1.08995 * 109.46662 * 52.08358 * 13 11 10 42 42 H 0.96998 * 120.00657 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.16248 * 197.97615 * 23 14 13 44 44 H 1.08994 * 109.12119 * 78.75072 * 23 14 13 45 45 H 1.09001 * 109.45777 * 199.98760 * 24 23 14 46 46 H 1.09003 * 109.44973 * 80.05439 * 24 23 14 47 47 H 1.08997 * 109.59034 * 331.61199 * 25 24 23 48 48 H 1.08998 * 109.58560 * 211.18123 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8803 1.9174 0.8946 5 6 3.0544 3.2075 0.5240 6 6 3.9239 4.2322 1.2060 7 6 4.8952 4.8102 0.2092 8 8 4.8823 4.4281 -0.9417 9 7 5.7781 5.7518 0.5969 10 6 6.7220 6.3141 -0.3722 11 6 7.6057 7.3534 0.3205 12 1 6.9766 8.1035 0.8001 13 6 8.5162 8.0376 -0.7279 14 7 9.2184 9.1475 -0.1105 15 6 8.6447 10.3905 -0.1438 16 1 8.6927 11.0308 0.7245 17 6 8.0013 10.8274 -1.2936 18 7 7.0794 11.7635 -1.2166 19 14 8.4440 10.0866 -2.9504 20 1 7.4930 8.9928 -3.2736 21 1 8.3664 11.1358 -3.9984 22 1 9.8246 9.5423 -2.8962 23 6 10.5268 8.9872 0.5516 24 6 10.5664 7.7011 1.3897 25 6 9.2395 7.5151 2.0977 26 8 8.3871 6.7315 1.2730 27 7 2.3074 3.3925 -0.5702 28 7 1.7060 2.2915 -0.8548 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.3358 1.4174 1.7365 35 1 4.4754 3.7581 2.0179 36 1 3.2986 5.0293 1.6084 37 1 5.7882 6.0576 1.5173 38 1 6.1702 6.7887 -1.1836 39 1 7.3469 5.5171 -0.7752 40 1 9.2397 7.3157 -1.1067 41 1 7.9066 8.4072 -1.5525 42 1 6.6295 12.0686 -2.0199 43 1 10.7061 9.8437 1.2016 44 1 11.3080 8.9442 -0.2072 45 1 11.3648 7.7734 2.1282 46 1 10.7523 6.8481 0.7370 47 1 8.7814 8.4878 2.2768 48 1 9.4003 7.0042 3.0469 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150012484.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:43 Heat of formation + Delta-G solvation = 16.794851 kcal Electronic energy + Delta-G solvation = -29370.760136 eV Core-core repulsion = 25270.015954 eV Total energy + Delta-G solvation = -4100.744182 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.17025 -40.95060 -40.15803 -37.04163 -36.44618 -35.91475 -34.22604 -33.72861 -33.19299 -31.70513 -30.61148 -29.10394 -27.49529 -26.75566 -25.53952 -24.38639 -22.90911 -22.57115 -22.27405 -21.28239 -21.03256 -18.91851 -18.49484 -18.00551 -17.78915 -17.49282 -17.23221 -17.09203 -16.35196 -16.29491 -15.91666 -15.60003 -15.38168 -15.29778 -15.09908 -14.61825 -14.38888 -14.32771 -14.15976 -13.91130 -13.80610 -13.57851 -13.28804 -13.15177 -12.90803 -12.87595 -12.64149 -12.40448 -12.30222 -12.27906 -12.04998 -11.80048 -11.62963 -11.58107 -11.29855 -10.98414 -10.91473 -10.71090 -10.33786 -10.11877 -10.03123 -8.74773 -8.26869 -5.65798 0.72003 1.26273 1.35619 1.45262 1.49281 1.61140 1.74265 2.31646 2.35964 2.73969 2.98758 3.30587 3.35429 3.69650 3.93899 3.96396 3.99028 4.04232 4.10486 4.16628 4.24119 4.28756 4.32066 4.45935 4.46510 4.48742 4.54955 4.59708 4.70896 4.73330 4.75491 4.77247 4.80755 5.00132 5.04092 5.06525 5.15180 5.20663 5.26038 5.27788 5.37548 5.45751 5.78643 5.91249 6.13366 6.64761 6.72809 6.97921 7.35688 7.59042 7.61237 7.98384 8.91982 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017760 B = 0.002375 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.202931 B =11788.434113 C =12766.543916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.101 3.899 3 N -0.289 5.289 4 C -0.024 4.024 5 C -0.035 4.035 6 C -0.043 4.043 7 C 0.507 3.493 8 O -0.583 6.583 9 N -0.710 5.710 10 C 0.141 3.859 11 C 0.095 3.905 12 H 0.042 0.958 13 C 0.111 3.889 14 N -0.613 5.613 15 C -0.262 4.262 16 H 0.047 0.953 17 C -0.008 4.008 18 N -0.938 5.938 19 Si 0.926 3.074 20 H -0.279 1.279 21 H -0.305 1.305 22 H -0.262 1.262 23 C 0.136 3.864 24 C -0.156 4.156 25 C 0.082 3.918 26 O -0.387 6.387 27 N -0.299 5.299 28 N -0.131 5.131 29 H 0.110 0.890 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.104 0.896 33 H 0.148 0.852 34 H 0.244 0.756 35 H 0.161 0.839 36 H 0.127 0.873 37 H 0.417 0.583 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.036 0.964 42 H 0.263 0.737 43 H 0.056 0.944 44 H 0.021 0.979 45 H 0.103 0.897 46 H 0.066 0.934 47 H 0.038 0.962 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.735 -26.857 13.580 30.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.017 4.017 3 N -0.083 5.083 4 C -0.176 4.176 5 C -0.175 4.175 6 C -0.084 4.084 7 C 0.295 3.705 8 O -0.462 6.462 9 N -0.363 5.363 10 C 0.016 3.984 11 C 0.033 3.967 12 H 0.060 0.940 13 C -0.016 4.016 14 N -0.337 5.337 15 C -0.392 4.392 16 H 0.065 0.935 17 C -0.206 4.206 18 N -0.581 5.581 19 Si 0.755 3.245 20 H -0.207 1.207 21 H -0.233 1.233 22 H -0.187 1.187 23 C 0.013 3.987 24 C -0.195 4.195 25 C 0.007 3.993 26 O -0.306 6.306 27 N -0.164 5.164 28 N -0.109 5.109 29 H 0.129 0.871 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.122 0.878 33 H 0.166 0.834 34 H 0.260 0.740 35 H 0.178 0.822 36 H 0.145 0.855 37 H 0.254 0.746 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.039 0.961 45 H 0.121 0.879 46 H 0.085 0.915 47 H 0.056 0.944 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.658 -26.921 11.410 29.987 hybrid contribution 0.586 0.828 -0.414 1.095 sum -6.072 -26.093 10.996 28.959 Atomic orbital electron populations 1.22055 0.92646 1.04922 1.02503 1.22578 0.97070 0.74508 1.07590 1.47901 1.29773 1.12878 1.17748 1.24062 0.98959 0.94124 1.00461 1.21790 1.03024 0.96094 0.96633 1.20004 0.94472 0.97484 0.96419 1.21184 0.81151 0.78825 0.89369 1.90730 1.71633 1.61762 1.22067 1.45774 1.35217 1.41060 1.14250 1.21081 0.90199 0.95685 0.91477 1.22033 0.91384 0.92707 0.90554 0.94027 1.21892 0.94873 0.89887 0.94927 1.44139 1.18813 1.03823 1.66882 1.18673 1.30859 0.93439 0.96231 0.93526 1.26028 0.97263 0.96721 1.00539 1.69974 1.24619 1.33961 1.29510 0.86118 0.79603 0.77037 0.81760 1.20675 1.23342 1.18674 1.21444 0.85229 0.97425 0.94642 1.22475 0.99316 0.97520 1.00157 1.22222 0.88873 0.95418 0.92827 1.86103 1.57287 1.38294 1.48898 1.75069 1.09563 1.17342 1.14473 1.78207 1.22520 0.93664 1.16547 0.87121 0.92208 0.93344 0.87809 0.83394 0.73990 0.82170 0.85516 0.74605 0.92702 0.91289 0.92306 0.94578 0.92767 0.92595 0.96102 0.87855 0.91487 0.94351 0.86641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 10.04 71.98 0.72 -0.48 16 2 C 0.10 0.72 7.17 86.38 0.62 1.34 16 3 N -0.29 -5.26 3.44 -347.73 -1.20 -6.45 16 4 C -0.02 -0.36 11.49 83.49 0.96 0.60 16 5 C -0.04 -0.85 6.00 41.60 0.25 -0.60 16 6 C -0.04 -0.78 6.28 29.10 0.18 -0.60 16 7 C 0.51 14.87 7.82 87.66 0.69 15.56 16 8 O -0.58 -23.69 15.60 -3.03 -0.05 -23.74 16 9 N -0.71 -19.60 5.49 -463.06 -2.54 -22.15 16 10 C 0.14 4.86 5.34 86.38 0.46 5.32 16 11 C 0.10 3.46 2.68 31.21 0.08 3.54 16 12 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 13 C 0.11 4.75 3.93 87.25 0.34 5.10 16 14 N -0.61 -27.92 1.75 -698.18 -1.22 -29.14 16 15 C -0.26 -14.44 9.69 84.03 0.81 -13.63 16 16 H 0.05 2.81 8.06 -2.91 -0.02 2.79 16 17 C -0.01 -0.44 5.22 84.86 0.44 0.00 16 18 N -0.94 -58.19 13.97 21.65 0.30 -57.88 16 19 Si 0.93 47.15 25.27 68.60 1.73 48.88 16 20 H -0.28 -13.98 6.70 99.48 0.67 -13.32 16 21 H -0.31 -15.72 7.11 99.48 0.71 -15.01 16 22 H -0.26 -12.90 7.11 99.48 0.71 -12.19 16 23 C 0.14 5.03 6.30 86.38 0.54 5.57 16 24 C -0.16 -4.30 5.78 30.31 0.18 -4.12 16 25 C 0.08 2.30 6.37 71.50 0.46 2.76 16 26 O -0.39 -12.07 9.38 -117.84 -1.11 -13.18 16 27 N -0.30 -10.10 11.82 -48.60 -0.57 -10.67 16 28 N -0.13 -3.84 12.91 37.02 0.48 -3.36 16 29 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.63 8.12 -2.39 -0.02 0.61 16 32 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.15 -0.23 8.07 -2.38 -0.02 -0.25 16 34 H 0.24 0.65 8.06 -2.91 -0.02 0.63 16 35 H 0.16 1.22 8.12 -2.39 -0.02 1.20 16 36 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.42 8.93 8.46 -92.71 -0.78 8.14 16 38 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 40 H 0.06 2.34 8.11 -2.39 -0.02 2.32 16 41 H 0.04 1.74 3.65 -2.39 -0.01 1.73 16 42 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 43 H 0.06 2.07 7.91 -2.39 -0.02 2.05 16 44 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.07 1.87 8.01 -2.39 -0.02 1.85 16 47 H 0.04 1.28 7.40 -2.39 -0.02 1.27 16 48 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -88.77 388.35 2.71 -86.06 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 0.14 Total: 11.28 kcal Atomic # 6 Polarization: 13.61 SS G_CDS: 6.74 Total: 20.35 kcal Atomic # 7 Polarization: -124.91 SS G_CDS: -4.75 Total: -129.66 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -1.15 Total: -36.91 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.73 Total: 48.88 kcal Total: -88.77 2.71 -86.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150012484.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.859 kcal (2) G-P(sol) polarization free energy of solvation -88.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds